Individual bat virome analysis reveals co-infection and spillover among bats and virus zoonotic potential
暂无分享,去创建一个
M. Shi | E. Holmes | D. Guo | Wei-hong Yang | G. Liang | Yun Feng | Jun Li | Shoudeng Chen | Yuelong Shu | Yao-Qing Chen | Yuanfei Pan | Jing Wang | Kexin Lv | Chuming Luo | Guopeng Kuang | Juan Wang | Qin-yu Gou | Wei-chen Wu | Li-fen Yang | Zihou Gao | Gen-yang Xin | Bo Li | Huan-le Luo | M. Shi | Genyang Xin
[1] M. Nilges,et al. Bat coronaviruses related to SARS-CoV-2 and infectious for human cells , 2022, Nature.
[2] M. Shi,et al. Total infectome characterization of respiratory infections in pre-COVID-19 Wuhan, China , 2022, PLoS pathogens.
[3] E. Holmes,et al. Zoonotic disease and virome diversity in bats , 2021, Current Opinion in Virology.
[4] R. Plowright,et al. Ecology, evolution and spillover of coronaviruses from bats , 2021, Nature reviews. Microbiology.
[5] H. Drost,et al. Sensitive protein alignments at tree-of-life scale using DIAMOND , 2021, Nature Methods.
[6] Alice C Hughes,et al. Identification of novel bat coronaviruses sheds light on the evolutionary origins of SARS-CoV-2 and related viruses , 2021, Cell.
[7] Alice C Hughes,et al. A Novel Bat Coronavirus Closely Related to SARS-CoV-2 Contains Natural Insertions at the S1/S2 Cleavage Site of the Spike Protein , 2020, Current Biology.
[8] Sarah K. Hilton,et al. Deep Mutational Scanning of SARS-CoV-2 Receptor Binding Domain Reveals Constraints on Folding and ACE2 Binding , 2020, Cell.
[9] Meiqin Liu,et al. Bat mammalian orthoreoviruses cause severe pneumonia in mice , 2020, Virology.
[10] R. Plowright,et al. Bat-borne virus diversity, spillover and emergence , 2020, Nature Reviews Microbiology.
[11] Eugene V. Koonin,et al. Genomic determinants of pathogenicity in SARS-CoV-2 and other human coronaviruses , 2020, Proceedings of the National Academy of Sciences.
[12] Alice C Hughes,et al. A Novel Bat Coronavirus Closely Related to SARS-CoV-2 Contains Natural Insertions at the S1/S2 Cleavage Site of the Spike Protein , 2020, Current Biology.
[13] Natacha S. Ogando,et al. SARS-coronavirus-2 replication in Vero E6 cells: replication kinetics, rapid adaptation and cytopathology , 2020, bioRxiv.
[14] D. Streicker,et al. Viral zoonotic risk is homogenous among taxonomic orders of mammalian and avian reservoir hosts , 2020, Proceedings of the National Academy of Sciences.
[15] Linqi Zhang,et al. Structure of the SARS-CoV-2 spike receptor-binding domain bound to the ACE2 receptor , 2020, Nature.
[16] E. Holmes,et al. A new coronavirus associated with human respiratory disease in China , 2020, Nature.
[17] Kai Zhao,et al. A pneumonia outbreak associated with a new coronavirus of probable bat origin , 2020, Nature.
[18] Jakub Rydzewski,et al. Promoting transparency and reproducibility in enhanced molecular simulations , 2019, Nature Methods.
[19] R. Plowright,et al. Synchronous shedding of multiple bat paramyxoviruses coincides with peak periods of Hendra virus spillover , 2019, Emerging microbes & infections.
[20] Jie Cui,et al. Origin and evolution of pathogenic coronaviruses , 2018, Nature Reviews Microbiology.
[21] P. Daszak,et al. Fatal swine acute diarrhoea syndrome caused by an HKU2-related coronavirus of bat origin , 2018, Nature.
[22] Yong-guan Zhu,et al. Spatial scale affects the relative role of stochasticity versus determinism in soil bacterial communities in wheat fields across the North China Plain , 2018, Microbiome.
[23] Julie K. Pfeiffer,et al. Bacteria Facilitate Enteric Virus Co-infection of Mammalian Cells and Promote Genetic Recombination. , 2018, Cell host & microbe.
[24] Ning Wang,et al. Discovery of a rich gene pool of bat SARS-related coronaviruses provides new insights into the origin of SARS coronavirus , 2017, PLoS pathogens.
[25] M. F. Boni,et al. Improved Algorithmic Complexity for the 3SEQ Recombination Detection Algorithm , 2017, Molecular biology and evolution.
[26] Zhichao Xu,et al. A New Bat-HKU2–like Coronavirus in Swine, China, 2017 , 2017, Emerging infectious diseases.
[27] James O. Lloyd-Smith,et al. Pathways to zoonotic spillover , 2017, Nature Reviews Microbiology.
[28] E. Holmes,et al. Comparative analysis estimates the relative frequencies of co-divergence and cross-species transmission within viral families , 2017, PLoS pathogens.
[29] Edward C. Holmes,et al. Redefining the invertebrate RNA virosphere , 2016, Nature.
[30] B. L. de Groot,et al. CHARMM36m: an improved force field for folded and intrinsically disordered proteins , 2016, Nature Methods.
[31] D. Hayman. Bats as Viral Reservoirs. , 2016, Annual review of virology.
[32] Berk Hess,et al. GROMACS: High performance molecular simulations through multi-level parallelism from laptops to supercomputers , 2015 .
[33] Yang Wang,et al. Clinical utility of a novel urine-based gene fusion TTTY15-USP9Y in predicting prostate biopsy outcome. , 2015, Urologic oncology.
[34] Shuyi Zhang,et al. Deciphering the bat virome catalog to better understand the ecological diversity of bat viruses and the bat origin of emerging infectious diseases , 2015, The ISME Journal.
[35] Dianjun Cao,et al. A Novel Pathogenic Mammalian Orthoreovirus from Diarrheic Pigs and Swine Blood Meal in the United States , 2015, mBio.
[36] Dale L. Anderson,et al. Ecological dynamics of emerging bat virus spillover , 2015, Proceedings of the Royal Society B: Biological Sciences.
[37] Kunihiko Sadakane,et al. MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph , 2014, Bioinform..
[38] J. Epstein,et al. Isolation and characterization of a bat SARS-like coronavirus that uses the ACE2 receptor , 2013, Nature.
[39] K. Katoh,et al. MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability , 2013, Molecular biology and evolution.
[40] E. Holmes,et al. Why do RNA viruses recombine? , 2011, Nature Reviews Microbiology.
[41] Jelle Matthijnssens,et al. Uniformity of rotavirus strain nomenclature proposed by the Rotavirus Classification Working Group (RCWG) , 2011, Archives of Virology.
[42] Gary F. McCracken,et al. Host Phylogeny Constrains Cross-Species Emergence and Establishment of Rabies Virus in Bats , 2010, Science.
[43] Toni Gabaldón,et al. trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses , 2009, Bioinform..
[44] Taehoon Kim,et al. CHARMM‐GUI: A web‐based graphical user interface for CHARMM , 2008, J. Comput. Chem..
[45] Jelle Matthijnssens,et al. Recommendations for the classification of group A rotaviruses using all 11 genomic RNA segments , 2008, Archives of Virology.
[46] Jelle Matthijnssens,et al. Full Genome-Based Classification of Rotaviruses Reveals a Common Origin between Human Wa-Like and Porcine Rotavirus Strains and Human DS-1-Like and Bovine Rotavirus Strains , 2008, Journal of Virology.
[47] A. Sali,et al. Statistical potential for assessment and prediction of protein structures , 2006, Protein science : a publication of the Protein Society.
[48] R. Glass,et al. Rotavirus and Severe Childhood Diarrhea , 2006, Emerging infectious diseases.
[49] François Stricher,et al. The FoldX web server: an online force field , 2005, Nucleic Acids Res..
[50] S. Weber,et al. Rotavirus infection in adults , 2004, The Lancet Infectious Diseases.
[51] X. L. Liu,et al. Isolation and Characterization of Viruses Related to the SARS Coronavirus from Animals in Southern China , 2003, Science.
[52] O. Gascuel,et al. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. , 2003, Systematic biology.
[53] Christian Drosten,et al. Identification of a novel coronavirus in patients with severe acute respiratory syndrome. , 2003, The New England journal of medicine.
[54] K. Lole,et al. Full-Length Human Immunodeficiency Virus Type 1 Genomes from Subtype C-Infected Seroconverters in India, with Evidence of Intersubtype Recombination , 1999, Journal of Virology.
[55] A Sali,et al. Comparative protein modeling by satisfaction of spatial restraints. , 1996, Molecular medicine today.
[56] J. Clewley,et al. Macintosh sequence analysis software , 1995, Molecular biotechnology.
[57] W. L. Jorgensen,et al. Comparison of simple potential functions for simulating liquid water , 1983 .
[58] K. Katoh,et al. Improvements in Performance and Usability , 2013 .
[59] V. Sharpe,et al. Competing interests , 2003, Nature Biotechnology.