Linear analysis near a steady-state of biochemical networks: Control analysis, correlation metrics and circuit theory
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[1] Hong Qian,et al. Phosphorylation energy hypothesis: open chemical systems and their biological functions. , 2007, Annual review of physical chemistry.
[2] H. Qian,et al. Relationship between Thermodynamic Driving Force and One-Way Fluxes in Reversible Processes , 2006, PloS one.
[3] Hong Qian,et al. Open-system nonequilibrium steady state: statistical thermodynamics, fluctuations, and chemical oscillations. , 2006, The journal of physical chemistry. B.
[4] Hong Qian,et al. Grand canonical Markov model: a stochastic theory for open nonequilibrium biochemical networks. , 2006, The Journal of chemical physics.
[5] H. Qian. Cycle kinetics, steady state thermodynamics and motors—a paradigm for living matter physics , 2005, Journal of physics. Condensed matter : an Institute of Physics journal.
[6] Gabriel Ciobanu,et al. Modelling in Molecular Biology , 2004, Natural Computing Series.
[7] H. Qian,et al. Stoichiometric network theory for nonequilibrium biochemical systems. , 2003, European journal of biochemistry.
[8] H. Qian,et al. Energy balance for analysis of complex metabolic networks. , 2002, Biophysical journal.
[9] Adam Arkin,et al. On the deduction of chemical reaction pathways from measurements of time series of concentrations. , 2001, Chaos.
[10] Hong Qian,et al. The mathematical theory of molecular motor movement and chemomechanical energy transduction , 2000, cond-mat/0106302.
[11] G. Oster,et al. Reverse engineering a protein: the mechanochemistry of ATP synthase. , 2000, Biochimica et biophysica acta.
[12] B. Palsson,et al. The Escherichia coli MG1655 in silico metabolic genotype: its definition, characteristics, and capabilities. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[13] M. Fisher,et al. The force exerted by a molecular motor. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[14] David A. Fell,et al. Increasing the flux in metabolic pathways: A metabolic control analysis perspective , 1998, Biotechnology and bioengineering.
[15] B. Palsson,et al. The underlying pathway structure of biochemical reaction networks. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[16] R. Heinrich,et al. The Regulation of Cellular Systems , 1996, Springer US.
[17] B. Kholodenko,et al. The macroworld versus the microworld of biochemical regulation and control. , 1995, Trends in biochemical sciences.
[18] Robert A. Alberty,et al. Degrees of freedom in biochemical reaction systems at specified pH and pMg , 1992 .
[19] Douglas Poland,et al. On the stability of mass action reactions in open systems , 1991 .
[20] P. Gräber,et al. Free Energy Transduction and Biochemical Cycle Kinetics. , 1990 .
[21] C Reder,et al. Metabolic control theory: a structural approach. , 1988, Journal of theoretical biology.
[22] T. L. Hill,et al. Free Energy Transduction and Biochemical Cycle Kinetics , 1988, Springer New York.
[23] C. Giersch. Control analysis of metabolic networks. 1. Homogeneous functions and the summation theorems for control coefficients. , 1988, European journal of biochemistry.
[24] C. Giersch. Control analysis of metabolic networks , 1988 .
[25] H. Westerhoff,et al. Thermodynamics and Control of Biological Free-Energy Transduction , 1987 .
[26] D. Fell,et al. Metabolic control and its analysis , 1985 .
[27] H. Westerhoff,et al. How do enzyme activities control metabolite concentrations? An additional theorem in the theory of metabolic control. , 1984, European journal of biochemistry.
[28] Bernard Derrida,et al. Velocity and diffusion constant of a periodic one-dimensional hopping model , 1983 .
[29] P. Zweifel. Advanced Mathematical Methods for Scientists and Engineers , 1980 .
[30] S. Orszag,et al. Advanced Mathematical Methods For Scientists And Engineers , 1979 .
[31] J Wyman,et al. The turning wheel: a study in steady states. , 1975, Proceedings of the National Academy of Sciences of the United States of America.
[32] I. H. Segel. Enzyme Kinetics: Behavior and Analysis of Rapid Equilibrium and Steady-State Enzyme Systems , 1975 .
[33] M. Savageau. Biochemical systems analysis. II. The steady-state solutions for an n-pool system using a power-law approximation. , 1969, Journal of theoretical biology.
[34] Daniel A. Beard,et al. Chemical Biophysics: Quantitative Analysis of Cellular Systems , 2008 .
[35] Hong Qian,et al. Stoichiometric Foundation of Large-Scale Biochemical System Analysis , 2004 .
[36] Adam P. Arkin,et al. Statistical Construction of Chemical Reaction Mechanisms from Measured Time-Series , 1995 .
[37] T. L. Hill,et al. Free Energy Transduction in Biology: The Steady-State Kinetic and Thermodynamic Formalism , 1977 .