A joint model for interval‐censored functional decline trajectories under informative observation

Multi-state models are useful for modelling disease progression where the state space of the process is used to represent the discrete disease status of subjects. Often, the disease process is only observed at clinical visits, and the schedule of these visits can depend on the disease status of patients. In such situations, the frequency and timing of observations may depend on transition times that are themselves unobserved in an interval-censored setting. There is a potential for bias if we model a disease process with informative observation times as a non-informative observation scheme with pre-specified examination times. In this paper, we develop a joint model for the disease and observation processes to ensure valid inference because the follow-up process may itself contain information about the disease process. The transitions for each subject are modelled using a Markov process, where bivariate subject-specific random effects are used to link the disease and observation models. Inference is based on a Bayesian framework, and we apply our joint model to the analysis of a large study examining functional decline trajectories of palliative care patients.

[1]  Daniela K. Nitcheva,et al.  Bayesian hierarchical models for food frequency assessment , 2010 .

[2]  G. Downing,et al.  Palliative Performance Scale (PPS): A New Tool , 1996, Journal of palliative care.

[3]  C. Earle,et al.  Modeling the longitudinal transitions of performance status in cancer outpatients: time to discuss palliative care. , 2013, Journal of pain and symptom management.

[4]  Michael G Downing,et al.  Using the Palliative Performance Scale to provide meaningful survival estimates. , 2009, Journal of pain and symptom management.

[5]  Baojiang Chen,et al.  Analysis of interval‐censored disease progression data via multi‐state models under a nonignorable inspection process , 2010, Statistics in medicine.

[6]  M. Plummer Penalized loss functions for Bayesian model comparison. , 2008, Biostatistics.

[7]  A. Brix Bayesian Data Analysis, 2nd edn , 2005 .

[8]  I. Langner Survival Analysis: Techniques for Censored and Truncated Data , 2006 .

[9]  David J. Lunn,et al.  The BUGS Book: A Practical Introduction to Bayesian Analysis , 2013 .

[10]  V T Farewell,et al.  Multi‐state Markov models for disease progression in the presence of informative examination times: An application to hepatitis C , 2010, Statistics in medicine.

[11]  P. Grambsch,et al.  A Package for Survival Analysis in S , 1994 .

[12]  Michael G Downing,et al.  A reliability and validity study of the Palliative Performance Scale , 2008, BMC palliative care.

[13]  R Henderson,et al.  Joint modelling of longitudinal measurements and event time data. , 2000, Biostatistics.

[14]  A. Mitnitski,et al.  A multi-state model for the analysis of changes in cognitive scores over a fixed time interval , 2014, Statistical methods in medical research.

[15]  Christopher H. Jackson,et al.  Multi-State Models for Panel Data: The msm Package for R , 2011 .

[16]  J Grüger,et al.  The validity of inferences based on incomplete observations in disease state models. , 1991, Biometrics.

[17]  J. Kalbfleisch,et al.  The Analysis of Panel Data under a Markov Assumption , 1985 .

[18]  C. Robert,et al.  Deviance information criteria for missing data models , 2006 .

[19]  S. Payne,et al.  Dying trajectories in heart failure , 2007, Palliative medicine.

[20]  J. Lynn,et al.  Trajectories of disability in the last year of life. , 2010, The New England journal of medicine.

[21]  John K Kruschke,et al.  Bayesian data analysis. , 2010, Wiley interdisciplinary reviews. Cognitive science.

[22]  D Commenges,et al.  Inference for multi-state models from interval-censored data , 2002, Statistical methods in medical research.

[23]  Cleve B. Moler,et al.  Nineteen Dubious Ways to Compute the Exponential of a Matrix, Twenty-Five Years Later , 1978, SIAM Rev..

[24]  Bradley P. Carlin,et al.  Bayesian measures of model complexity and fit , 2002 .

[25]  D. Dudgeon,et al.  Multistate analysis of interval-censored longitudinal data: application to a cohort study on performance status among patients diagnosed with cancer. , 2011, American journal of epidemiology.

[26]  F. Lau,et al.  Survival implications of sudden functional decline as a sentinel event using the palliative performance scale. , 2010, Journal of palliative medicine.

[27]  F S Nathoo,et al.  Spatial Multistate Transitional Models for Longitudinal Event Data , 2008, Biometrics.

[28]  Amy Ming-Fang Yen,et al.  A Markov regression random‐effects model for remission of functional disability in patients following a first stroke: A Bayesian approach , 2007, Statistics in medicine.

[29]  Michael G Downing,et al.  Meta-analysis of Survival Prediction with Palliative Performance Scale , 2007, Journal of palliative care.