A reproducible evaluation of ANTs similarity metric performance in brain image registration

[1]  Craig E. L. Stark,et al.  High-resolution structural and functional MRI of hippocampal CA3 and dentate gyrus in patients with amnestic Mild Cognitive Impairment , 2010, NeuroImage.

[2]  Wiro J. Niessen,et al.  Accuracy and reproducibility study of automatic MRI brain tissue segmentation methods , 2010, NeuroImage.

[3]  Dinggang Shen,et al.  ABSORB: Atlas building by self-organized registration and bundling , 2010, NeuroImage.

[4]  J. Gee,et al.  Early Stress Is Associated with Alterations in the Orbitofrontal Cortex: A Tensor-Based Morphometry Investigation of Brain Structure and Behavioral Risk , 2010, The Journal of Neuroscience.

[5]  Paul M. Thompson,et al.  LONI MiND: Metadata in NIfTI for DWI , 2010, NeuroImage.

[6]  Satrajit S. Ghosh,et al.  Evaluation of volume-based and surface-based brain image registration methods , 2010, NeuroImage.

[7]  Daniel Rueckert,et al.  Improving intersubject image registration using tissue-class information benefits robustness and accuracy of multi-atlas based anatomical segmentation , 2010, NeuroImage.

[8]  Brian B. Avants,et al.  Dementia induces correlated reductions in white matter integrity and cortical thickness: A multivariate neuroimaging study with sparse canonical correlation analysis , 2010, NeuroImage.

[9]  Brian B. Avants,et al.  Bias in estimation of hippocampal atrophy using deformation-based morphometry arises from asymmetric global normalization: An illustration in ADNI 3 T MRI data , 2010, NeuroImage.

[10]  Brian B. Avants,et al.  The optimal template effect in hippocampus studies of diseased populations , 2010, NeuroImage.

[11]  Michael W. L. Chee,et al.  Skull stripping using graph cuts , 2010, NeuroImage.

[12]  Max A. Viergever,et al.  elastix: A Toolbox for Intensity-Based Medical Image Registration , 2010, IEEE Transactions on Medical Imaging.

[13]  Paul Suetens,et al.  Nonrigid Image Registration Using Conditional Mutual Information , 2010, IEEE Transactions on Medical Imaging.

[14]  J. P. Lewis Fast Normalized Cross-Correlation , 2010 .

[15]  Chulhee Lee,et al.  Skull stripping based on region growing for magnetic resonance brain images , 2009, NeuroImage.

[16]  Guozhi Tao,et al.  Symmetric inverse consistent nonlinear registration driven by mutual information , 2009, Comput. Methods Programs Biomed..

[17]  Suyash P. Awate,et al.  A New Information-Theoretic Measure to Control the Robustness-Sensitivity Trade-Off for DMFFD Point-Set Registration , 2009, IPMI.

[18]  Arno Klein,et al.  Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration , 2009, NeuroImage.

[19]  James C Gee,et al.  Appearance and incomplete label matching for diffeomorphic template based hippocampus segmentation , 2009, Hippocampus.

[20]  W. K. Simmons,et al.  Circular analysis in systems neuroscience: the dangers of double dipping , 2009, Nature Neuroscience.

[21]  H. Pashler,et al.  Puzzlingly High Correlations in fMRI Studies of Emotion, Personality, and Social Cognition 1 , 2009, Perspectives on psychological science : a journal of the Association for Psychological Science.

[22]  Tom Vercauteren,et al.  Diffeomorphic demons: Efficient non-parametric image registration , 2009, NeuroImage.

[23]  Brian B. Avants,et al.  Directly Manipulated Free-Form Deformation Image Registration , 2009, IEEE Transactions on Image Processing.

[24]  Brian B. Avants,et al.  A high-resolution computational atlas of the human hippocampus from postmortem magnetic resonance imaging at 9.4 T , 2009, NeuroImage.

[25]  Xavier Pennec,et al.  Diffeomorphic Demons Using ITK's Finite Difference Solver Hierarchy , 2008, The Insight Journal.

[26]  Stephen C. Strother,et al.  Evaluation and comparison of GLM- and CVA-based fMRI processing pipelines with Java-based fMRI processing pipeline evaluation system , 2008, NeuroImage.

[27]  Guy B. Williams,et al.  The impact of skull-stripping and radio-frequency bias correction on grey-matter segmentation for voxel-based morphometry , 2008, NeuroImage.

[28]  Arthur W. Toga,et al.  Construction of a 3D probabilistic atlas of human cortical structures , 2008, NeuroImage.

[29]  Brian B. Avants,et al.  Symmetric diffeomorphic image registration with cross-correlation: Evaluating automated labeling of elderly and neurodegenerative brain , 2008, Medical Image Anal..

[30]  Brian B. Avants,et al.  Multi-start Method with Prior Learning for Image Registration , 2007, 2007 IEEE 11th International Conference on Computer Vision.

[31]  Brian B. Avants,et al.  Spatiotemporal Normalization for Longitudinal Analysis of Gray Matter Atrophy in Frontotemporal Dementia , 2007, MICCAI.

[32]  John Ashburner,et al.  A fast diffeomorphic image registration algorithm , 2007, NeuroImage.

[33]  Daniel Rueckert,et al.  Automatic anatomical brain MRI segmentation combining label propagation and decision fusion , 2006, NeuroImage.

[34]  James C. Gee,et al.  Generalized n-D Ck B-Spline Scattered Data Approximation with Confidence Values , 2006, MIAR.

[35]  Fabrice Heitz,et al.  Retrospective evaluation of a topology preserving non-rigid registration method , 2006, Medical Image Anal..

[36]  Luis Ibáñez,et al.  Open Source and Open Science: how it is changing the medical imaging community , 2006, 3rd IEEE International Symposium on Biomedical Imaging: Nano to Macro, 2006..

[37]  Erik G. Learned-Miller,et al.  Data driven image models through continuous joint alignment , 2006, IEEE Transactions on Pattern Analysis and Machine Intelligence.

[38]  K. J. Ray Liu,et al.  Fingerprint multicast in secure video streaming , 2006, IEEE Transactions on Image Processing.

[39]  Alain Trouvé,et al.  Geodesic Shooting for Computational Anatomy , 2006, Journal of Mathematical Imaging and Vision.

[40]  Dimitris N. Metaxas,et al.  Open science - combining open data and open source software: Medical image analysis with the Insight Toolkit , 2005, Medical Image Anal..

[41]  N-D $C^k$ B-Spline Scattered Data Approximation , 2005, The Insight Journal.

[42]  S. B. Eickhoff,et al.  Quantitative architectural analysis: a new approach to cortical mapping , 2005, Anatomy and Embryology.

[43]  Albert C. S. Chung,et al.  Multi-dimensional Mutual Information Based Robust Image Registration Using Maximum Distance-Gradient-Magnitude , 2005, IPMI.

[44]  Babak A. Ardekani,et al.  Quantitative comparison of algorithms for inter-subject registration of 3D volumetric brain MRI scans , 2005, Journal of Neuroscience Methods.

[45]  Arthur W. Toga,et al.  The LONI Debabeler: a mediator for neuroimaging software , 2005, NeuroImage.

[46]  Alain Trouvé,et al.  Computing Large Deformation Metric Mappings via Geodesic Flows of Diffeomorphisms , 2005, International Journal of Computer Vision.

[47]  Guido Gerig,et al.  Unbiased diffeomorphic atlas construction for computational anatomy , 2004, NeuroImage.

[48]  A. M. Dale,et al.  A hybrid approach to the skull stripping problem in MRI , 2004, NeuroImage.

[49]  Torsten Rohlfing,et al.  Evaluation of atlas selection strategies for atlas-based image segmentation with application to confocal microscopy images of bee brains , 2004, NeuroImage.

[50]  Olivier D. Faugeras,et al.  Variational Methods for Multimodal Image Matching , 2002, International Journal of Computer Vision.

[51]  James C. Gee,et al.  Point similarity measures for non-rigid registration of multi-modal data , 2003, Comput. Vis. Image Underst..

[52]  D. Louis Collins,et al.  Retrospective evaluation of intersubject brain registration , 2003, IEEE Transactions on Medical Imaging.

[53]  Alexander Hammers,et al.  Three‐dimensional maximum probability atlas of the human brain, with particular reference to the temporal lobe , 2003, Human brain mapping.

[54]  David J. Hawkes,et al.  Information Theoretic Similarity Measures in Non-rigid Registration , 2003, IPMI.

[55]  Stanislav Kovacic,et al.  Symmetric image registration , 2003, SPIE Medical Imaging.

[56]  Pierre Hellier,et al.  Coupling dense and landmark-based approaches for nonrigid registration , 2003, IEEE Transactions on Medical Imaging.

[57]  David R. Haynor,et al.  PET-CT image registration in the chest using free-form deformations , 2003, IEEE Transactions on Medical Imaging.

[58]  James C. Gee,et al.  Registration patterns: the generic framework for image registration of the insight toolkit , 2002, Proceedings IEEE International Symposium on Biomedical Imaging.

[59]  Dinggang Shen,et al.  HAMMER: hierarchical attribute matching mechanism for elastic registration , 2002, IEEE Transactions on Medical Imaging.

[60]  Paul Suetens,et al.  A Viscous Fluid Model for Multimodal Non-rigid Image Registration Using Mutual Information , 2002, MICCAI.

[61]  L. Younes,et al.  On the metrics and euler-lagrange equations of computational anatomy. , 2002, Annual review of biomedical engineering.

[62]  Nick C Fox,et al.  Imaging of onset and progression of Alzheimer's disease with voxel-compression mapping of serial magnetic resonance images , 2001, The Lancet.

[63]  Anders M. Dale,et al.  A hybrid approach to the Skull Stripping problem in MRI , 2001, NeuroImage.

[64]  A M Dale,et al.  Measuring the thickness of the human cerebral cortex from magnetic resonance images. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[65]  Karl J. Friston,et al.  Voxel-Based Morphometry—The Methods , 2000, NeuroImage.

[66]  Daniel Rueckert,et al.  Nonrigid registration using free-form deformations: application to breast MR images , 1999, IEEE Transactions on Medical Imaging.

[67]  James C. Gee,et al.  On matching brain volumes , 1999, Pattern Recognit..

[68]  Jean-Philippe Thirion,et al.  Image matching as a diffusion process: an analogy with Maxwell's demons , 1998, Medical Image Anal..

[69]  J C Mazziotta,et al.  Automated image registration: II. Intersubject validation of linear and nonlinear models. , 1998, Journal of computer assisted tomography.

[70]  David A. Clausi,et al.  A fast method to determine co-occurrence texture features , 1998, IEEE Trans. Geosci. Remote. Sens..

[71]  David H. Wolpert,et al.  No free lunch theorems for optimization , 1997, IEEE Trans. Evol. Comput..

[72]  Guy Marchal,et al.  Multimodality image registration by maximization of mutual information , 1997, IEEE Transactions on Medical Imaging.

[73]  D L Hill,et al.  Automated three-dimensional registration of magnetic resonance and positron emission tomography brain images by multiresolution optimization of voxel similarity measures. , 1997, Medical physics.

[74]  Michael I. Miller,et al.  Deformable templates using large deformation kinematics , 1996, IEEE Trans. Image Process..

[75]  Paul A. Viola,et al.  Alignment by Maximization of Mutual Information , 1995, Proceedings of IEEE International Conference on Computer Vision.

[76]  Guojie Li,et al.  From the Editor-in-Chief , 1995, Journal of Computer Science and Technology.

[77]  Lisa M. Brown,et al.  A survey of image registration techniques , 1992, CSUR.

[78]  K. Lim,et al.  Segmentation of MR Brain Images into Cerebrospinal Fluid Spaces, White and Gray Matter , 1989, Journal of computer assisted tomography.

[79]  Ruzena Bajcsy,et al.  Multiresolution elastic matching , 1989, Comput. Vis. Graph. Image Process..

[80]  William M. Wells,et al.  Efficient Synthesis of Gaussian Filters by Cascaded Uniform Filters , 1986, IEEE Transactions on Pattern Analysis and Machine Intelligence.

[81]  Thomas S. Huang,et al.  A fast two-dimensional median filtering algorithm , 1979 .

[82]  V. Arnold,et al.  Ordinary Differential Equations , 1973 .

[83]  J. Marsden,et al.  Groups of diffeomorphisms and the motion of an incompressible fluid , 1970 .

[84]  N. G. Parke,et al.  Ordinary Differential Equations. , 1958 .