Lanthanide‐Binding Tags as Versatile Protein Coexpression Probes

Comprehensive proteomic analyses require new methodologies to accelerate the correlation of gene sequence with protein function. Key tools for such efforts include biophysical probes that integrate into the covalent architecture of proteins. Lanthanide‐binding tags (LBTs) are expressible, multitasking fusion partners that are optimized to bind lanthanide ions and have several desirable attributes, which include long‐lived luminescence, excellent X‐ray scattering power for phase determination, and magnetic properties to facilitate NMR spectroscopic structure elucidation. Herein, we present peptide sequences with a 40‐fold higher affinity for Tb3+ ions and significantly brighter luminescence intensity compared with existing peptides. Incorporation of an LBT onto ubiquitin as a prototype fusion protein allows the use of powerful protein‐visualization techniques, which include rapid luminescence detection of LBT‐tagged proteins in SDS‐PAGE gels, as well as determination of protein concentrations in complex mixtures. The LBT strategy is a new alternative for expressing fluorescent fusion proteins by routine molecular biological techniques.

[1]  M. Fridkin,et al.  Peptides related to the calcium binding domains II and III of calmodulin. Synthesis and calmodulin-like features. , 2009, International journal of peptide and protein research.

[2]  M. T. Miranda,et al.  Steady-state luminescence investigation of the binding of Eu(III) and Tb(III) ions with synthetic peptides derived from plant thionins. , 2002, Journal of inorganic biochemistry.

[3]  Robert E Campbell,et al.  New biarsenical ligands and tetracysteine motifs for protein labeling in vitro and in vivo: synthesis and biological applications. , 2002, Journal of the American Chemical Society.

[4]  A. Rosato,et al.  Paramagnetically induced residual dipolar couplings for solution structure determination of lanthanide binding proteins. , 2002, Journal of the American Chemical Society.

[5]  H. Kaback,et al.  Engineering a terbium-binding site into an integral membrane protein for luminescence energy transfer , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[6]  P. Schultz,et al.  Expanding the Genetic Code , 2003, Science.

[7]  R. Ebright,et al.  Site-specific incorporation of fluorescent probes into protein: hexahistidine-tag-mediated fluorescent labeling with (Ni(2+):nitrilotriacetic Acid (n)-fluorochrome conjugates. , 2001, Journal of the American Chemical Society.

[8]  G. Moore,et al.  Structural characteristics of protein binding sites for calcium and lanthanide ions , 2001, JBIC Journal of Biological Inorganic Chemistry.

[9]  D. A. Dougherty,et al.  Unnatural amino acids as probes of protein structure and function. , 2000, Current opinion in chemical biology.

[10]  G. Veglia,et al.  Lanthanide Ion Binding to Adventitious Sites Aligns Membrane Proteins in Micelles for Solution NMR Spectroscopy , 2000 .

[11]  Che Ma,et al.  Lanthanide ions bind specifically to an added "EF-hand" and orient a membrane protein in micelles for solution NMR spectroscopy. , 2000, Journal of magnetic resonance.

[12]  Paul R. Selvin,et al.  The renaissance of fluorescence resonance energy transfer , 2000, Nature Structural Biology.

[13]  I. Bertini,et al.  Lanthanide-Induced Pseudocontact Shifts for Solution Structure Refinements of Macromolecules in Shells up to 40 Å from the Metal Ion , 2000 .

[14]  B. Imperiali,et al.  α-Chloroacetyl capping of peptides: an N-terminal capping strategy suitable for Edman sequencing , 2000 .

[15]  Francisco Bezanilla,et al.  Atomic scale movement of the voltage-sensing region in a potassium channel measured via spectroscopy , 1999, Nature.

[16]  T. Muir,et al.  Peptide ligation and its application to protein engineering. , 1999, Chemistry & biology.

[17]  H. Sticht,et al.  Alpha-helix nucleation by a calcium-binding peptide loop. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[18]  R Y Tsien,et al.  Specific covalent labeling of recombinant protein molecules inside live cells. , 1998, Science.

[19]  R. Tsien,et al.  green fluorescent protein , 2020, Catalysis from A to Z.

[20]  I. Bertini,et al.  Solution structure of the paramagnetic complex of the N-terminal domain of calmodulin with two Ce3+ ions by 1H NMR. , 1997, Biochemistry.

[21]  Kit S. Lam,et al.  The “One-Bead-One-Compound” Combinatorial Library Method , 1997 .

[22]  C. Pace,et al.  How to measure and predict the molar absorption coefficient of a protein , 1995, Protein science : a publication of the Protein Society.

[23]  C. MacKenzie,et al.  Bifunctional fusion proteins consisting of a single-chain antibody and an engineered lanthanide-binding protein. , 1995, Immunotechnology : an international journal of immunological engineering.

[24]  C. Hogue,et al.  Detection of calcium binding proteins on polyacrylamide gels using time-resolved lanthanide luminescence photography. , 1994, Analytical biochemistry.

[25]  R. Procyshyn,et al.  A structure/activity study of calcium affinity and selectivity using a synthetic peptide model of the helix-loop-helix calcium-binding motif. , 1994, The Journal of biological chemistry.

[26]  C. Evans Biochemistry of the Lanthanides , 1990, Biochemistry of the Elements.

[27]  R. Hodges,et al.  A 1H NMR determination of the solution conformation of a synthetic peptide analogue of calcium-binding site III of rabbit skeletal troponin C. , 1989, Biochemistry.

[28]  P. Ruzza,et al.  Conformation and ion binding properties of peptides related to calcium binding domain III of bovine brain calmodulin , 1989, Biopolymers.

[29]  G. Anantharamaiah,et al.  Structural and biological studies on synthetic peptide analogues of a low-affinity calcium-binding site of skeletal troponin C. , 1987, Biochimica et biophysica acta.

[30]  H. Gampp,et al.  Calculation of equilibrium constants from multiwavelength spectroscopic data--II: SPECFIT: two user-friendly programs in basic and standard FORTRAN 77. , 1985, Talanta.

[31]  R. Lenkinski,et al.  Synthetic peptide analogs of skeletal troponin C: fluorescence studies of analogs of the low-affinity calcium-binding site II. , 1983, Archives of biochemistry and biophysics.

[32]  Frederick S. Richardson,et al.  Terbium(III) and europium(III) ions as luminescent probes and stains for biomolecular systems , 1982 .

[33]  K. Geoghegan,et al.  Chemical Modification of Proteins: An Overview , 1982 .

[34]  R. Přibil Present state of complexometry-IV Determination of rare earths. , 1967, Talanta.

[35]  G. Goch,et al.  A comparative CD and fluorescence study of a series of model calcium-binding peptides. , 1999, Acta biochimica Polonica.

[36]  S. Doublié [29] Preparation of selenomethionyl proteins for phase determination. , 1997, Methods in enzymology.

[37]  J. Williams,et al.  Getting excited about lanthanide complexation chemistry , 1996 .