STIR: software for tomographic image reconstruction release 2

We present an update to STIR, an Open Source object-oriented library in C++ for 3D PET reconstruction. This library has been designed so that it can be used for many algorithms and scanner geometries, while being portable to various computing platforms. This second release enhances its flexibility and modular design, but also adds extra capabilities such as list mode reconstruction, more data formats etc.

[1]  C. C. Watson New, faster, image-based scatter correction for 3D PET , 1999 .

[2]  D. Bailey,et al.  The direct calculation of parametric images from dynamic PET data using maximum-likelihood iterative reconstruction. , 1997 .

[3]  Habib Zaidi,et al.  An Object-Oriented Library for 3D PET Reconstruction Using Parallel Computing , 1999, Bildverarbeitung für die Medizin.

[4]  S. Alenius,et al.  Bayesian image reconstruction for emission tomography based on median root prior , 1997, European Journal of Nuclear Medicine.

[5]  Hakan Erdogan,et al.  An Ordered Subsets Algorithm for Transmission Tomography , 1998 .

[6]  Richard A. Robb,et al.  The biomedical imaging resource at Mayo Clinic , 2001, IEEE Transactions on Medical Imaging.

[7]  J. D. Wilson,et al.  A smoothed EM approach to indirect estimation problems, with particular reference to stereology and emission tomography , 1990 .

[8]  Lucas C. Parra,et al.  List-Mode Likelihood EM Algorithm and Noise Estimation Demonstrated on 2D-PET , 1998, IEEE Trans. Medical Imaging.

[9]  Kris Thielemans,et al.  Study of direct and indirect parametric estimation methods of linear models in dynamic positron emission tomography. , 2008, Medical physics.

[10]  R A Robb,et al.  Analyze: a comprehensive, operator-interactive software package for multidimensional medical image display and analysis. , 1989, Computerized medical imaging and graphics : the official journal of the Computerized Medical Imaging Society.

[11]  Tobias Beisel,et al.  A method for OSEM PET reconstruction on parallel architectures using STIR , 2008, 2008 IEEE Nuclear Science Symposium Conference Record.

[12]  Jinyi Qi,et al.  Iterative reconstruction techniques in emission computed tomography , 2006, Physics in medicine and biology.

[13]  Kris Thielemans,et al.  Object dependency of resolution in reconstruction algorithms with interiteration filtering applied to PET data , 2004, IEEE Transactions on Medical Imaging.

[14]  Hakan Erdogan,et al.  Ordered subsets algorithms for transmission tomography. , 1999, Physics in medicine and biology.

[15]  Ralph Johnson,et al.  design patterns elements of reusable object oriented software , 2019 .

[16]  C. M. Chen,et al.  Incremental algorithm-a new fast backprojection scheme for parallel beam geometries. , 1990, IEEE transactions on medical imaging.

[17]  A Todd-Pokropek,et al.  A file format for the exchange of nuclear medicine image data: a specification of Interfile version 3.3. , 1992, Nuclear medicine communications.

[18]  Paul Kinahan,et al.  Analytic 3D image reconstruction using all detected events , 1989 .

[19]  P. Bruyant Analytic and iterative reconstruction algorithms in SPECT. , 2002, Journal of nuclear medicine : official publication, Society of Nuclear Medicine.

[20]  Ariela Sofer,et al.  A data-parallel algorithm for iterative tomographic image reconstruction , 1999, Proceedings. Frontiers '99. Seventh Symposium on the Frontiers of Massively Parallel Computation.

[21]  Gunnar Brix,et al.  Fast implementation of the single scatter simulation algorithm and its use in iterative image reconstruction of PET data. , 2002, Physics in medicine and biology.

[22]  C S Patlak,et al.  Graphical Evaluation of Blood-to-Brain Transfer Constants from Multiple-Time Uptake Data , 1983, Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism.

[23]  L. Shepp,et al.  Maximum Likelihood Reconstruction for Emission Tomography , 1983, IEEE Transactions on Medical Imaging.

[24]  Claire Labbé,et al.  An object-oriented library incorporating efficient projection/backprojection operators for volume reconstruction in 3D PET , 1999 .

[25]  C. C. Watson,et al.  New, faster, image-based scatter correction for 3D PET , 1999, 1999 IEEE Nuclear Science Symposium. Conference Record. 1999 Nuclear Science Symposium and Medical Imaging Conference (Cat. No.99CH37019).

[26]  R. Siddon Fast calculation of the exact radiological path for a three-dimensional CT array. , 1985, Medical physics.

[27]  P. Green On Use of the EM Algorithm for Penalized Likelihood Estimation , 1990 .

[28]  C. Tsoumpas,et al.  An evaluation of various analytic reconstruction algorithms and implementations for 2D and 3D PET , 2004, IEEE Symposium Conference Record Nuclear Science 2004..

[29]  F. Jansen,et al.  A new algorithm for scaling of PET scatter estimates using all coincidence events , 2007, 2007 IEEE Nuclear Science Symposium Conference Record.

[30]  Kris Thielemans,et al.  STIR: Software for Tomographic Image Reconstruction Release 2 , 2006 .

[31]  Jeffrey H. Siewerdsen,et al.  SU-FF-I-16: OSCaR: An Open-Source Cone-Beam CT Reconstruction Tool for Imaging Research , 2007 .

[32]  J. Ollinger Model-based scatter correction for fully 3D PET. , 1996, Physics in medicine and biology.

[33]  D. Newport,et al.  A Single Scatter Simulation Technique for Scatter Correction in 3D PET , 1996 .

[34]  Wolfgang Enghardt,et al.  Attenuation and scatter correction for in-beam positron emission tomography monitoring of tumour irradiations with heavy ions. , 2003, Physics in medicine and biology.

[35]  Charles C. Watson,et al.  A technique for measuring the energy response of a PET tomograph using a compact scattering source , 1996, 1996 IEEE Nuclear Science Symposium. Conference Record.

[36]  H. Barrett,et al.  List-mode likelihood: EM algorithm and image quality estimation demonstrated on 2-D PET , 1998, IEEE Transactions on Medical Imaging.

[37]  K Thielemans,et al.  Enhanced 3D PET OSEM reconstruction using inter-update Metz filtering. , 2000, Physics in medicine and biology.

[38]  M L Egger,et al.  Incremental beamwise backprojection using geometrical symmetries for 3D PET reconstruction in a cylindrical scanner geometry. , 1998, Physics in medicine and biology.

[39]  P. Green Bayesian reconstructions from emission tomography data using a modified EM algorithm. , 1990, IEEE transactions on medical imaging.

[40]  H. Malcolm Hudson,et al.  Accelerated image reconstruction using ordered subsets of projection data , 1994, IEEE Trans. Medical Imaging.

[41]  F. Fazio,et al.  Implementation and evaluation of a 3D one-step late reconstruction algorithm for 3D positron emission tomography brain studies using median root prior , 2002, European Journal of Nuclear Medicine and Molecular Imaging.

[42]  C. Tsoumpas,et al.  Evaluation of the single scatter simulation algorithm implemented in the STIR library , 2004, IEEE Symposium Conference Record Nuclear Science 2004..

[43]  Jeffrey A. Fessler,et al.  Globally convergent image reconstruction for emission tomography using relaxed ordered subsets algorithms , 2003, IEEE Transactions on Medical Imaging.