Linear Control Theory for Gene Network Modeling
暂无分享,去创建一个
[1] Albert Y. Zomaya,et al. Algorithms in Computational Molecular Biology: Techniques, Approaches and Applications , 2011 .
[2] Guy Karlebach,et al. Modelling and analysis of gene regulatory networks , 2008, Nature Reviews Molecular Cell Biology.
[3] Chrystopher L. Nehaniv,et al. Bio-Logic: Gene Expression and the Laws of Combinatorial Logic , 2008, Artificial Life.
[4] Farren J. Isaacs,et al. Computational studies of gene regulatory networks: in numero molecular biology , 2001, Nature Reviews Genetics.
[5] M. di Bernardo,et al. How to Turn a Genetic Circuit into a Synthetic Tunable Oscillator, or a Bistable Switch , 2009, PloS one.
[6] James M. Bower,et al. Computational modeling of genetic and biochemical networks , 2001 .
[7] Benjamin L Turner,et al. Supporting Online Material Materials and Methods Som Text Figs. S1 to S3 Table S1 References Robust, Tunable Biological Oscillations from Interlinked Positive and Negative Feedback Loops , 2022 .
[8] E. Dougherty,et al. Gene perturbation and intervention in probabilistic Boolean networks. , 2002, Bioinformatics.
[9] L. Serrano,et al. Engineering stability in gene networks by autoregulation , 2000, Nature.
[10] S. Ramaswamy,et al. Microarrays for an integrative genomics , 2004 .
[11] S. Mangan,et al. Structure and function of the feed-forward loop network motif , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[12] M. di Bernardo,et al. Comparing different ODE modelling approaches for gene regulatory networks. , 2009, Journal of theoretical biology.
[13] A. Oudenaarden,et al. Nature, Nurture, or Chance: Stochastic Gene Expression and Its Consequences , 2008, Cell.
[14] D. A. Baxter,et al. Modeling transcriptional control in gene networks—methods, recent results, and future directions , 2000, Bulletin of mathematical biology.
[15] and Charles K. Taft Reswick,et al. Introduction to Dynamic Systems , 1967 .
[16] E. Andrianantoandro,et al. Synthetic biology: new engineering rules for an emerging discipline , 2006, Molecular systems biology.
[17] J. Davies,et al. Molecular Biology of the Cell , 1983, Bristol Medico-Chirurgical Journal.
[18] B. P. Lathi. Linear systems and signals , 1992 .
[19] J. Stelling,et al. A tunable synthetic mammalian oscillator , 2009, Nature.
[20] R. Thomas,et al. Boolean formalization of genetic control circuits. , 1973, Journal of theoretical biology.
[21] Zdzislaw Bubnicki,et al. Modern Control Theory , 2005 .
[22] S. Shen-Orr,et al. Networks Network Motifs : Simple Building Blocks of Complex , 2002 .
[23] M. Elowitz,et al. Reconstruction of genetic circuits , 2005, Nature.
[24] Mehrdad Nourani,et al. Statecharts for Gene Network Modeling , 2010, PloS one.
[25] P. Swain,et al. Intrinsic and extrinsic contributions to stochasticity in gene expression , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[26] S. Shen-Orr,et al. Network motifs: simple building blocks of complex networks. , 2002, Science.
[27] Nicholas J. Guido,et al. A bottom-up approach to gene regulation , 2006, Nature.
[28] James C. W. Locke,et al. Using movies to analyse gene circuit dynamics in single cells , 2009, Nature Reviews Microbiology.
[29] James J. Collins,et al. Next-Generation Synthetic Gene Networks , 2009, Nature Biotechnology.
[30] Richard Banks,et al. Qualitatively modelling and analysing genetic regulatory networks: a Petri net approach , 2007, Bioinform..
[31] Jorge Goncalves,et al. Control theory and systems biology , 2009 .
[32] Magda Osman,et al. Control Systems Engineering , 2010 .
[33] John B. Moore,et al. Optimal State Estimation , 2006 .
[34] G. D. Gatta,et al. Systems and Synthetic biology: tackling genetic networks and complex diseases , 2009, Heredity.
[35] M. L. Simpson,et al. Frequency domain analysis of noise in simple gene circuits. , 2006, Chaos.
[36] Giovanni De Micheli,et al. Synchronous versus asynchronous modeling of gene regulatory networks , 2008, Bioinform..
[37] U. Alon. Network motifs: theory and experimental approaches , 2007, Nature Reviews Genetics.
[38] Robert F. Stengel,et al. Optimal Control and Estimation , 1994 .
[39] Gürol M. Süel,et al. An excitable gene regulatory circuit induces transient cellular differentiation , 2006, Nature.
[40] M. L. Simpson,et al. Gene network shaping of inherent noise spectra , 2006, Nature.
[41] Shane T. Jensen,et al. The Program of Gene Transcription for a Single Differentiating Cell Type during Sporulation in Bacillus subtilis , 2004, PLoS biology.
[42] M. L. Simpson,et al. Frequency domain analysis of noise in autoregulated gene circuits , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[43] H. Kitano. Systems Biology: A Brief Overview , 2002, Science.
[44] M. Bennett,et al. A fast, robust, and tunable synthetic gene oscillator , 2008, Nature.
[45] H. Bolouri. Computational Modeling of Gene Regulatory Networks - A Primer , 2008 .
[46] H. D. Jong,et al. Qualitative simulation of genetic regulatory networks using piecewise-linear models , 2004, Bulletin of mathematical biology.
[47] B. Anderson,et al. Optimal control: linear quadratic methods , 1990 .
[48] H. D. Jong,et al. Piecewise-linear Models of Genetic Regulatory Networks: Equilibria and their Stability , 2006, Journal of mathematical biology.
[49] Ronald W. Davis,et al. Quantitative Monitoring of Gene Expression Patterns with a Complementary DNA Microarray , 1995, Science.
[50] J. Raser,et al. Noise in Gene Expression: Origins, Consequences, and Control , 2005, Science.
[51] Eduardo D. Sontag,et al. Reverse Engineering of Molecular Networks from a Common Combinatorial Approach , 2010, ArXiv.
[52] M. Elowitz,et al. Regulatory activity revealed by dynamic correlations in gene expression noise , 2008, Nature Genetics.
[53] N. Lee,et al. Computational and experimental approaches for modeling gene regulatory networks. , 2007, Current pharmaceutical design.
[54] Gilbert Strang,et al. Computational Science and Engineering , 2007 .