A portable expression resource for engineering cross-species genetic circuits and pathways
暂无分享,去创建一个
[1] A. Ellington,et al. Directed Evolution of a Panel of Orthogonal T7 RNA Polymerase Variants for in Vivo or in Vitro Synthetic Circuitry. , 2015, ACS synthetic biology.
[2] Hal S Alper,et al. Advances and current limitations in transcript-level control of gene expression. , 2015, Current opinion in biotechnology.
[3] Chiam Yu Ng,et al. Rational design of a synthetic Entner-Doudoroff pathway for improved and controllable NADPH regeneration. , 2015, Metabolic engineering.
[4] Domitilla Del Vecchio,et al. Modularity, context-dependence, and insulation in engineered biological circuits , 2015 .
[5] Swapnil Bhatia,et al. Functional optimization of gene clusters by combinatorial design and assembly , 2014, Nature Biotechnology.
[6] Takuji Tanaka,et al. Metabolic Engineering of a Glycerol-Oxidative Pathway in Lactobacillus panis PM1 for Utilization of Bioethanol Thin Stillage: Potential To Produce Platform Chemicals from Glycerol , 2014, Applied and Environmental Microbiology.
[7] Marjan De Mey,et al. Multivariate modular metabolic engineering for pathway and strain optimization. , 2014, Current opinion in biotechnology.
[8] Lei Yang,et al. Permanent genetic memory with >1 byte capacity , 2014, Nature Methods.
[9] M. Isalan,et al. A split intein T7 RNA polymerase for transcriptional AND-logic , 2014, Nucleic acids research.
[10] Mauricio Barahona,et al. Engineering modular and tunable genetic amplifiers for scaling transcriptional signals in cascaded gene networks , 2014, Nucleic acids research.
[11] H. Salis,et al. Efficient search, mapping, and optimization of multi‐protein genetic systems in diverse bacteria , 2014 .
[12] Kathleen A. Curran,et al. Design of synthetic yeast promoters via tuning of nucleosome architecture , 2014, Nature Communications.
[13] T. Lütke-Eversloh. Application of new metabolic engineering tools for Clostridium acetobutylicum , 2014, Applied Microbiology and Biotechnology.
[14] V. Lorenzo,et al. Biotechnological domestication of pseudomonads using synthetic biology , 2014, Nature Reviews Microbiology.
[15] Howard J. Li,et al. Rapid and tunable post-translational coupling of genetic circuits , 2014, Nature.
[16] Christopher A. Voigt,et al. Principles of genetic circuit design , 2014, Nature Methods.
[17] J. Keasling,et al. Integrating Biological Redesign: Where Synthetic Biology Came From and Where It Needs to Go , 2014, Cell.
[18] James J Collins,et al. Programmable bacteria detect and record an environmental signal in the mammalian gut , 2014, Proceedings of the National Academy of Sciences.
[19] Minh Duc Cao,et al. Inferring short tandem repeat variation from paired-end short reads , 2013, Nucleic acids research.
[20] Georg Fritz,et al. The Bacillus BioBrick Box: generation and evaluation of essential genetic building blocks for standardized work with Bacillus subtilis , 2013, Journal of Biological Engineering.
[21] Christopher A. Voigt,et al. Advances in genetic circuit design: novel biochemistries, deep part mining, and precision gene expression. , 2013, Current opinion in chemical biology.
[22] H. Salis,et al. Translation rate is controlled by coupled trade-offs between site accessibility, selective RNA unfolding and sliding at upstream standby sites , 2013, Nucleic acids research.
[23] G. Church,et al. Cas9 as a versatile tool for engineering biology , 2013, Nature Methods.
[24] P. Hols,et al. Metabolic engineering of Lactobacillus plantarum for succinic acid production through activation of the reductive branch of the tricarboxylic acid cycle. , 2013, Enzyme and microbial technology.
[25] Christopher A. Voigt,et al. Characterization of 582 natural and synthetic terminators and quantification of their design constraints , 2013, Nature Methods.
[26] Rahul Sarpeshkar,et al. Synthetic analog computation in living cells , 2013, Nature.
[27] Matthew R Bennett,et al. Library of synthetic transcriptional AND gates built with split T7 RNA polymerase mutants , 2013, Proceedings of the National Academy of Sciences.
[28] Timothy K Lu,et al. Synthetic circuits integrating logic and memory in living cells , 2013, Nature Biotechnology.
[29] Feng Zhang,et al. CRISPR-assisted editing of bacterial genomes , 2013, Nature Biotechnology.
[30] J. Park,et al. Metabolic engineering of Escherichia coli using synthetic small regulatory RNAs , 2013, Nature Biotechnology.
[31] Gábor Balázsi,et al. Transferring a synthetic gene circuit from yeast to mammalian cells , 2013, Nature Communications.
[32] B. Wilkinson,et al. Bioengineering natural product biosynthetic pathways for therapeutic applications. , 2012, Current opinion in biotechnology.
[33] Terence Hwa,et al. On Ribosome Load, Codon Bias and Protein Abundance , 2012, PloS one.
[34] Christopher A. Voigt,et al. Ribozyme-based insulator parts buffer synthetic circuits from genetic context , 2012, Nature Biotechnology.
[35] Thomas E. Landrain,et al. De novo automated design of small RNA circuits for engineering synthetic riboregulation in living cells , 2012, Proceedings of the National Academy of Sciences.
[36] Gabriel C. Wu,et al. Successes and failures in modular genetic engineering. , 2012, Current Opinion in Chemical Biology.
[37] Christopher A. Voigt,et al. Modular control of multiple pathways using engineered orthogonal T7 polymerases , 2012, Nucleic acids research.
[38] A. Arkin,et al. Contextualizing context for synthetic biology – identifying causes of failure of synthetic biological systems , 2012, Biotechnology journal.
[39] R. Weiss,et al. Foundations for the design and implementation of synthetic genetic circuits , 2012, Nature Reviews Genetics.
[40] Tomáš Polívka,et al. Towards characterization of DNA structure under physiological conditions in vivo at the single-molecule level using single-pair FRET , 2012, Nucleic acids research.
[41] Sang Yup Lee,et al. Metabolic Engineering of Clostridium acetobutylicum ATCC 824 for Isopropanol-Butanol-Ethanol Fermentation , 2011, Applied and Environmental Microbiology.
[42] Robert Landick,et al. Bacterial transcription terminators: the RNA 3'-end chronicles. , 2011, Journal of molecular biology.
[43] Hal Alper,et al. Tuning Gene Expression in Yarrowia lipolytica by a Hybrid Promoter Approach , 2011, Applied and Environmental Microbiology.
[44] R. Siezen,et al. Genomic diversity and versatility of Lactobacillus plantarum, a natural metabolic engineer , 2011, Microbial cell factories.
[45] D. G. Gibson,et al. Enzymatic Assembly of Overlapping DNA Fragments , 2011, Methods in Enzymology.
[46] S. K. Desai,et al. Synthetic Riboswitches That Induce Gene Expression in Diverse Bacterial Species , 2010, Applied and Environmental Microbiology.
[47] I. Matsumura,et al. Rational Design of a Plasmid Origin That Replicates Efficiently in Both Gram-Positive and Gram-Negative Bacteria , 2010, PloS one.
[48] H. P. Sørensen. Towards universal systems for recombinant gene expression , 2010, Microbial cell factories.
[49] L. You,et al. Emergent bistability by a growth-modulating positive feedback circuit. , 2009, Nature chemical biology.
[50] A. Trusina,et al. Real-Time Redox Measurements during Endoplasmic Reticulum Stress Reveal Interlinked Protein Folding Functions , 2008, Cell.
[51] James M. Hogan,et al. The cross-species prediction of bacterial promoters using a support vector machine , 2008, Comput. Biol. Chem..
[52] A. Karsi,et al. Broad host range fluorescence and bioluminescence expression vectors for Gram-negative bacteria. , 2007, Plasmid.
[53] A. Nicholson,et al. Characterization of RNA sequence determinants and antideterminants of processing reactivity for a minimal substrate of Escherichia coli ribonuclease III , 2006, Nucleic acids research.
[54] R. Burgess,et al. RNA Polymerases from Bacillus subtilisand Escherichia coli Differ in Recognition of Regulatory Signals In Vitro , 2000, Journal of bacteriology.
[55] C. Pabo,et al. Geometric analysis and comparison of protein-DNA interfaces: why is there no simple code for recognition? , 2000, Journal of molecular biology.
[56] M. Ehrenberg,et al. Shutdown in protein synthesis due to the expression of mini-genes in bacteria. , 1999, Journal of molecular biology.
[57] S. Cohen,et al. Effects of nucleotide sequence on the specificity of rne-dependent and RNase E-mediated cleavages of RNA I encoded by the pBR322 plasmid. , 1994, The Journal of biological chemistry.
[58] S. Cohen,et al. A+U content rather than a particular nucleotide order determines the specificity of RNase E cleavage. , 1994, The Journal of biological chemistry.
[59] R. J. Douthart,et al. Protein expression from an Escherichia coli/Bacillus subtilis multifunctional shuttle plasmid with synthetic promoter sequences. , 1992, Protein expression and purification.
[60] G. Mackie,et al. Secondary structure of the mRNA for ribosomal protein S20. Implications for cleavage by ribonuclease E. , 1992, The Journal of biological chemistry.
[61] F. Studier,et al. Controlling basal expression in an inducible T7 expression system by blocking the target T7 promoter with lac repressor. , 1991, Journal of molecular biology.
[62] F. Studier. Use of bacteriophage T7 lysozyme to improve an inducible T7 expression system. , 1991, Journal of molecular biology.
[63] O. Elroy-Stein,et al. Cytoplasmic expression system based on constitutive synthesis of bacteriophage T7 RNA polymerase in mammalian cells. , 1990, Proceedings of the National Academy of Sciences of the United States of America.
[64] Geoffrey E. Hinton,et al. Phoneme recognition using time-delay neural networks , 1989, IEEE Trans. Acoust. Speech Signal Process..
[65] F. Studier,et al. Use of bacteriophage T7 RNA polymerase to direct selective high-level expression of cloned genes. , 1986, Journal of molecular biology.
[66] Christopher A. Voigt,et al. Automated design of synthetic ribosome binding sites to control protein expression , 2016 .
[67] Domitilla Del Vecchio,et al. Modularity, context-dependence, and insulation in engineered biological circuits. , 2015, Trends in biotechnology.
[68] Christopher A. Voigt,et al. A ‘resource allocator’ for transcription based on a highly fragmented T7 RNA polymerase , 2014 .
[69] V. Solovyev,et al. Automatic Annotation of Microbial Genomes and Metagenomic Sequences 3 MATERIAL AND METHODS Learning Parameters and Prediction of Protein-Coding Genes , 2013 .
[70] Kristian M Müller,et al. Standardization in synthetic biology. , 2012, Methods in molecular biology.
[71] H. Salis. The ribosome binding site calculator. , 2011, Methods in enzymology.
[72] P. Stragier,et al. Plasmids for ectopic integration in Bacillus subtilis. , 1996, Gene.
[73] H. Krisch,et al. Specificity of Escherichia coli endoribonuclease RNase E: in vivo and in vitro analysis of mutants in a bacteriophage T4 mRNA processing site. , 1992, Genes & development.
[74] D. Helinski,et al. Promoters of the broad host range plasmid RK2: analysis of transcription (initiation) in five species of gram-negative bacteria. , 1992, Genetics.
[75] C. Harwood,et al. Molecular biological methods for Bacillus , 1990 .