miRNEST database: an integrative approach in microRNA search and annotation
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Sebastian Deorowicz | Izabela Makalowska | Michal Wojciech Szczesniak | Jakub Gapski | Lukasz Kaczynski | M. Szcześniak | S. Deorowicz | I. Makałowska | Jakub Gapski | L. Kaczynski | Sebastian Deorowicz
[1] Chi-Ying F. Huang,et al. miRTarBase: a database curates experimentally validated microRNA–target interactions , 2010, Nucleic Acids Res..
[2] M. D. Boer,et al. MicroRNAs in acute leukemia: from biological players to clinical contributors , 2012, Leukemia.
[3] P. Sharp,et al. MicroRNA functions in stress responses. , 2010, Molecular cell.
[4] B. Cullen,et al. Human microRNAs are processed from capped, polyadenylated transcripts that can also function as mRNAs. , 2004, RNA.
[5] Katherine E. Guill,et al. A Genome-Wide Characterization of MicroRNA Genes in Maize , 2009, PLoS genetics.
[6] Walter Fontana,et al. Fast folding and comparison of RNA secondary structures , 1994 .
[7] María Martín,et al. Ongoing and future developments at the Universal Protein Resource , 2010, Nucleic Acids Res..
[8] Jennifer Daub,et al. Expressed sequence tags: medium-throughput protocols. , 2004, Methods in molecular biology.
[9] L. O’Neill,et al. MicroRNAs: the fine-tuners of Toll-like receptor signalling , 2011, Nature Reviews Immunology.
[10] Pengfei Cai,et al. Identification and characterization of microRNAs and endogenous siRNAs in Schistosoma japonicum , 2010, BMC Genomics.
[11] Fabian J Theis,et al. PhenomiR: a knowledgebase for microRNA expression in diseases and biological processes , 2010, Genome Biology.
[12] Yuasa Takashi,et al. The interaction between DCL1 and HYL1 is important for efficient and precise processing of pri-miRNA in plant microRNA biogenesis. , 2005, RNA.
[13] Baohong Zhang,et al. Identification and characterization of new plant microRNAs using EST analysis , 2005, Cell Research.
[14] Dennis Shasha,et al. miRò: a miRNA knowledge base , 2009, Database J. Biol. Databases Curation.
[15] Wen-chang Lin,et al. Vir-Mir db: prediction of viral microRNA candidate hairpins , 2007, Nucleic Acids Res..
[16] Martin Reczko,et al. Lost in translation: an assessment and perspective for computational microRNA target identification , 2009, Bioinform..
[17] Tao Wang,et al. PMRD: plant microRNA database , 2009, Nucleic Acids Res..
[18] Michel Georges,et al. Patrocles: a database of polymorphic miRNA-mediated gene regulation in vertebrates , 2008, Nucleic Acids Res..
[19] Javier F. Palatnik,et al. Specific effects of microRNAs on the plant transcriptome. , 2005, Developmental cell.
[20] Sean R. Eddy,et al. Rfam: annotating non-coding RNAs in complete genomes , 2004, Nucleic Acids Res..
[21] Vasile Palade,et al. microPred: effective classification of pre-miRNAs for human miRNA gene prediction , 2009, Bioinform..
[22] Hui Zhou,et al. ncRNAimprint: a comprehensive database of mammalian imprinted noncoding RNAs. , 2010, RNA.
[23] D. di Bernardo,et al. CoGemiR: A comparative genomics microRNA database , 2008, BMC Genomics.
[24] Vladimir B. Bajic,et al. dPORE-miRNA: Polymorphic Regulation of MicroRNA Genes , 2011, PloS one.
[25] X. Huang,et al. CAP3: A DNA sequence assembly program. , 1999, Genome research.
[26] Yann Ponty,et al. VARNA: Interactive drawing and editing of the RNA secondary structure , 2009, Bioinform..
[27] Riccardo Velasco,et al. Ontology-oriented retrieval of putative microRNAs in Vitis vinifera via GrapeMiRNA: a web database of de novo predicted grape microRNAs , 2009, BMC Plant Biology.
[28] Xiaowei Wang. miRDB: a microRNA target prediction and functional annotation database with a wiki interface. , 2008, RNA.
[29] Alejandro A. Schäffer,et al. A Fast and Symmetric DUST Implementation to Mask Low-Complexity DNA Sequences , 2006, J. Comput. Biol..
[30] R. Agami,et al. Interplay between microRNAs and RNA-binding proteins determines developmental processes , 2008, Cell cycle.
[31] L. Lim,et al. An Abundant Class of Tiny RNAs with Probable Regulatory Roles in Caenorhabditis elegans , 2001, Science.
[32] Ze-Guang Han,et al. Genome-Wide Identification of Schistosoma japonicum MicroRNAs Using a Deep-Sequencing Approach , 2009, PloS one.
[33] Evgeny M. Zdobnov,et al. miROrtho: computational survey of microRNA genes , 2008, Nucleic Acids Res..
[34] David L. Wheeler,et al. GenBank , 2015, Nucleic Acids Res..
[35] E. Lai. Micro RNAs are complementary to 3′ UTR sequence motifs that mediate negative post-transcriptional regulation , 2002, Nature Genetics.
[36] Hsien-Da Huang,et al. miRNAMap: genomic maps of microRNA genes and their target genes in mammalian genomes , 2005, Nucleic Acids Res..
[37] Changning Liu,et al. dbDEMC: a database of differentially expressed miRNAs in human cancers , 2010, BMC Genomics.
[38] Eric Lai,et al. MicroRNA-Related Cofilin Abnormality in Alzheimer's Disease , 2010, PloS one.
[39] Scott A. Givan,et al. ASRP: the Arabidopsis Small RNA Project Database , 2004, Nucleic Acids Res..
[40] Cole Trapnell,et al. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome , 2009, Genome Biology.
[41] Dennis B. Troup,et al. NCBI GEO: archive for functional genomics data sets—10 years on , 2010, Nucleic Acids Res..
[42] B. Reinhart,et al. MicroRNAs in plants. , 2002, Genes & development.
[43] Rodrigo Lopez,et al. Clustal W and Clustal X version 2.0 , 2007, Bioinform..
[44] M. Boguski,et al. dbEST — database for “expressed sequence tags” , 1993, Nature Genetics.
[45] Hui Zhou,et al. deepBase: a database for deeply annotating and mining deep sequencing data , 2009, Nucleic Acids Res..
[46] Simone Brabletz,et al. The ZEB1/miR‐200 feedback loop controls Notch signalling in cancer cells , 2011, The EMBO journal.
[47] Boris Lenhard,et al. RNAdb 2.0—an expanded database of mammalian non-coding RNAs , 2006, Nucleic Acids Res..
[48] Ana Kozomara,et al. miRBase: integrating microRNA annotation and deep-sequencing data , 2010, Nucleic Acids Res..
[49] Duangdao Wichadakul,et al. MicroPC (μPC): A comprehensive resource for predicting and comparing plant microRNAs , 2009, BMC Genomics.
[50] Tongbin Li,et al. miRecords: an integrated resource for microRNA–target interactions , 2008, Nucleic Acids Res..
[51] V. Kim,et al. The nuclear RNase III Drosha initiates microRNA processing , 2003, Nature.