Data-driven microbiota biomarker discovery for personalized drug therapy of cardiovascular disease.
暂无分享,去创建一个
[1] Robert D. Finn,et al. A unified catalog of 204,938 reference genomes from the human gut microbiome , 2020, Nature Biotechnology.
[2] Chee Keong Kwoh,et al. Predicting Human Microbe-Drug Associations via Graph Convolutional Network with Conditional Random Field , 2020, Bioinform..
[3] Bairong Shen,et al. Heart rate variability based prediction of personalized drug therapeutic response: the present status and the perspectives. , 2020, Current topics in medicinal chemistry.
[4] Xiujuan Lei,et al. Predicting Microbe-Disease Association by Learning Graph Representations and Rule-Based Inference on the Heterogeneous Network , 2020, Frontiers in Microbiology.
[5] M. Mahmoudi,et al. Gut microbiota and cardiovascular disease: opportunities and challenges , 2020, Microbiome.
[6] M. Mayr,et al. Noncoding RNAs versus Protein Biomarkers in Cardiovascular Disease. , 2020, Trends in molecular medicine.
[7] Oliver Fiehn,et al. A Cardiovascular Disease-Linked Gut Microbial Metabolite Acts via Adrenergic Receptors , 2020, Cell.
[8] Jing Ma,et al. Gut microbial taxa as potential predictive biomarkers for acute coronary syndrome and post-STEMI cardiovascular events , 2020, Scientific Reports.
[9] Lequan Yu,et al. MS-Net: Multi-Site Network for Improving Prostate Segmentation With Heterogeneous MRI Data , 2020, IEEE Transactions on Medical Imaging.
[10] C. Vlachopoulos,et al. Periodontitis and cardiovascular diseases: Consensus report , 2020, Journal of clinical periodontology.
[11] Bairong Shen,et al. Phenotype–genotype network construction and characterization: a case study of cardiovascular diseases and associated non-coding RNAs , 2020, Database J. Biol. Databases Curation.
[12] M. Rogero,et al. The Two-Way Polyphenols-Microbiota Interactions and Their Effects on Obesity and Related Metabolic Diseases , 2019, Front. Nutr..
[13] Dominik G Grimm,et al. Current challenges and best-practice protocols for microbiome analysis , 2019, Briefings Bioinform..
[14] U. Eriksson,et al. Microbiota-derived peptide mimics drive lethal inflammatory cardiomyopathy , 2019, Science.
[15] M. Garelnabi,et al. Polyphenolic compounds and gut microbiome in cardiovascular diseases. , 2019, Current pharmaceutical biotechnology.
[16] Robert D. Finn,et al. MGnify: the microbiome analysis resource in 2020 , 2019, Nucleic Acids Res..
[17] Bairong Shen,et al. MIRKB: a myocardial infarction risk knowledge base , 2019, Database J. Biol. Databases Curation.
[18] E. Sanders,et al. Impact of delivery mode-associated gut microbiota dynamics on health in the first year of life , 2019, Nature Communications.
[19] Liang Cheng,et al. gutMDisorder: a comprehensive database for dysbiosis of the gut microbiota in disorders and interventions , 2019, Nucleic acids research.
[20] D. Panagiotakos,et al. Mining possible associations of faecal A. muciniphila colonisation patterns with host adiposity and cardiometabolic markers in an adult population. , 2019, Beneficial microbes.
[21] Ashutosh Gupta,et al. Beneficial Effects of Dietary Polyphenols on Gut Microbiota and Strategies to Improve Delivery Efficiency , 2019, Nutrients.
[22] J. Ferguson,et al. The Gut Microbiome and Response to Cardiovascular Drugs. , 2019, Circulation. Genomic and precision medicine.
[23] Bairong Shen,et al. Translational Informatics for Parkinson’s Disease: from Big Biomedical Data to Small Actionable Alterations , 2019, Genom. Proteom. Bioinform..
[24] G. Condorelli,et al. MicroRNAs as Companion Biomarkers for the Diagnosis and Prognosis of Acute Coronary Syndromes. , 2019, Circulation research.
[25] Juan Xu,et al. Landscape of the long non-coding RNA transcriptome in human heart , 2019, Briefings Bioinform..
[26] R. Xavier,et al. Gut Microbial Associations to Plasma Metabolites Linked to Cardiovascular Phenotypes and Risk. , 2019, Circulation research.
[27] J. Auwerx,et al. The mitophagy activator urolithin A is safe and induces a molecular signature of improved mitochondrial and cellular health in humans , 2019, Nature metabolism.
[28] Bairong Shen,et al. Computer-aided biomarker discovery for precision medicine: data resources, models and applications , 2019, Briefings Bioinform..
[29] Andrew D. Johnson,et al. 70-year legacy of the Framingham Heart Study , 2019, Nature Reviews Cardiology.
[30] Q. Yu,et al. Using herbal medicine to target the "microbiota-metabolism-immunity" axis as possible therapy for cardiovascular disease. , 2019, Pharmacological research.
[31] Lihui Zhao,et al. Associations of Dietary Cholesterol or Egg Consumption With Incident Cardiovascular Disease and Mortality , 2019, JAMA.
[32] Sonika Bhatnagar,et al. MorCVD: A Unified Database for Host-Pathogen Protein-Protein Interactions of Cardiovascular Diseases Related to Microbes , 2019, Scientific Reports.
[33] D. Figeys,et al. RapidAIM: a culture- and metaproteomics-based Rapid Assay of Individual Microbiome responses to drugs , 2019, Microbiome.
[34] Yasukiyo Yoshioka,et al. Role of Intestinal Microbiota in the Bioavailability and Physiological Functions of Dietary Polyphenols , 2019, Molecules.
[35] Xing Chen,et al. MDAD: A Special Resource for Microbe-Drug Associations , 2018, Front. Cell. Infect. Microbiol..
[36] T. Yanagita,et al. Trimethylamine-N-oxide (TMAO)-induced atherosclerosis is associated with bile acid metabolism , 2018, Lipids in Health and Disease.
[37] D. Bruner,et al. Composition of gut microbiota and its association with body mass index and lifestyle factors in a cohort of 7–18 years old children from the American Gut Project , 2018, Pediatric obesity.
[38] Mohammad Hossein Khosravi,et al. Global, regional, and national age-sex-specific mortality for 282 causes of death in 195 countries and territories, 1980–2017: a systematic analysis for the Global Burden of Disease Study 2017 , 2018, Lancet.
[39] Holger Husi,et al. C/VDdb: A multi-omics expression profiling database for a knowledge-driven approach in cardiovascular disease (CVD) , 2018, bioRxiv.
[40] E. Diamandis,et al. Optimizing cancer immunotherapy: Is it time for personalized predictive biomarkers? , 2018, Critical reviews in clinical laboratory sciences.
[41] R. Horst,et al. Role of gut microbiota in chronic low‐grade inflammation as potential driver for atherosclerotic cardiovascular disease: a systematic review of human studies , 2018, Obesity reviews : an official journal of the International Association for the Study of Obesity.
[42] Siu-Ming Yiu,et al. BMCMDA: a novel model for predicting human microbe-disease associations via binary matrix completion , 2018, BMC Bioinformatics.
[43] J. Tu,et al. Development and validation of a cardiovascular disease risk-prediction model using population health surveys: the Cardiovascular Disease Population Risk Tool (CVDPoRT) , 2018, Canadian Medical Association Journal.
[44] M. Nieuwenhuijsen. Influence of urban and transport planning and the city environment on cardiovascular disease , 2018, Nature Reviews Cardiology.
[45] R. Kizek,et al. Contribution of Red Wine Consumption to Human Health Protection , 2018, Molecules.
[46] J. Nielandt,et al. Disbiome database: linking the microbiome to disease , 2018, BMC Microbiology.
[47] Jim Warren,et al. Cardiovascular disease risk prediction equations in 400 000 primary care patients in New Zealand: a derivation and validation study , 2018, The Lancet.
[48] Yongzhong Zhao,et al. Gut microbiota derived metabolites in cardiovascular health and disease , 2018, Protein & Cell.
[49] Jingyuan Fu,et al. Pharmacomicrobiomics: a novel route towards personalized medicine? , 2018, Protein & Cell.
[50] L. Gesualdo,et al. Microbiota metabolites: Pivotal players of cardiovascular damage in chronic kidney disease , 2018, Pharmacological research.
[51] L. Carrera-Quintanar,et al. Phytochemicals That Influence Gut Microbiota as Prophylactics and for the Treatment of Obesity and Inflammatory Diseases , 2018, Mediators of inflammation.
[52] A. Crozier,et al. Trimethylamine-N-Oxide (TMAO)-Induced Impairment of Cardiomyocyte Function and the Protective Role of Urolithin B-Glucuronide , 2018, Molecules.
[53] S. Hazen,et al. Microbial modulation of cardiovascular disease , 2018, Nature Reviews Microbiology.
[54] Xun Xu,et al. The gut microbiome in atherosclerotic cardiovascular disease , 2017, Nature Communications.
[55] Ankit Sharma,et al. In-Cardiome: integrated knowledgebase for coronary artery disease enabling translational research , 2017, Database J. Biol. Databases Curation.
[56] M. D. de Goffau,et al. A longitudinal study of the infant nasopharyngeal microbiota: The effects of age, illness and antibiotic use in a cohort of South East Asian children , 2017, PLoS neglected tropical diseases.
[57] M. Kozioł-Montewka,et al. Gut microbiome as a biomarker of cardiometabolic disorders. , 2017, Annals of agricultural and environmental medicine : AAEM.
[58] D. Goff,et al. Application of a Lifestyle-Based Tool to Estimate Premature Cardiovascular Disease Events in Young Adults: The Coronary Artery Risk Development in Young Adults (CARDIA) Study , 2017, JAMA internal medicine.
[59] A. Crozier,et al. In vivo administration of urolithin A and B prevents the occurrence of cardiac dysfunction in streptozotocin-induced diabetic rats , 2017, Cardiovascular Diabetology.
[60] J. Manson,et al. Gut Microbiota Metabolites and Risk of Major Adverse Cardiovascular Disease Events and Death: A Systematic Review and Meta‐Analysis of Prospective Studies , 2017, Journal of the American Heart Association.
[61] W. Tang,et al. Therapeutic Strategies Targeting Inherited Cardiomyopathies , 2017, Current Heart Failure Reports.
[62] J. Hippisley-Cox,et al. Development and validation of QRISK3 risk prediction algorithms to estimate future risk of cardiovascular disease: prospective cohort study , 2017, British Medical Journal.
[63] S. Hazen,et al. Gut Microbiota in Cardiovascular Health and Disease , 2017, Circulation research.
[64] Zhu-Hong You,et al. A novel approach based on KATZ measure to predict associations of human microbiota with non‐infectious diseases , 2016, Bioinform..
[65] E. Boerwinkle,et al. Genetic Risk, Adherence to a Healthy Lifestyle, and Coronary Disease. , 2016, The New England journal of medicine.
[66] K. Griffiths,et al. Food Antioxidants and Their Anti-Inflammatory Properties: A Potential Role in Cardiovascular Diseases and Cancer Prevention , 2016, Diseases.
[67] F. Bernini,et al. Antiatherogenic effects of ellagic acid and urolithins in vitro. , 2016, Archives of biochemistry and biophysics.
[68] R. Osawa,et al. Age-related changes in gut microbiota composition from newborn to centenarian: a cross-sectional study , 2016, BMC Microbiology.
[69] Soonkyu Chung,et al. Urolithin A, C, and D, but not iso-urolithin A and urolithin B, attenuate triglyceride accumulation in human cultures of adipocytes and hepatocytes. , 2016, Molecular nutrition & food research.
[70] R. Milo,et al. Revised Estimates for the Number of Human and Bacteria Cells in the Body , 2016, bioRxiv.
[71] S. Hazen,et al. Non-lethal Inhibition of Gut Microbial Trimethylamine Production for the Treatment of Atherosclerosis , 2015, Cell.
[72] Andreas Wilke,et al. The MG-RAST metagenomics database and portal in 2015 , 2015, Nucleic Acids Res..
[73] J. Tu,et al. Predicting Stroke Risk Based on Health Behaviours: Development of the Stroke Population Risk Tool (SPoRT) , 2015, PloS one.
[74] R. Murugesan,et al. CardioGenBase: A Literature Based Multi-Omics Database for Major Cardiovascular Diseases , 2015, PloS one.
[75] A. von Eckardstein,et al. Plasma levels of trimethylamine-N-oxide are confounded by impaired kidney function and poor metabolic control. , 2015, Atherosclerosis.
[76] S. Granica,et al. Urolithins, gut microbiota-derived metabolites of ellagitannins, inhibit LPS-induced inflammation in RAW 264.7 murine macrophages. , 2015, Molecular nutrition & food research.
[77] Yan He,et al. Dysbiosis of Gut Microbiota With Reduced Trimethylamine‐N‐Oxide Level in Patients With Large‐Artery Atherosclerotic Stroke or Transient Ischemic Attack , 2015, Journal of the American Heart Association.
[78] S. Hazen,et al. Gut Microbiota-Dependent Trimethylamine N-Oxide (TMAO) Pathway Contributes to Both Development of Renal Insufficiency and Mortality Risk in Chronic Kidney Disease , 2015, Circulation research.
[79] Sonia S Anand,et al. Cardiovascular disease in Asian Americans: unmasking heterogeneity. , 2014, Journal of the American College of Cardiology.
[80] S. Hazen,et al. Prognostic value of elevated levels of intestinal microbe-generated metabolite trimethylamine-N-oxide in patients with heart failure: refining the gut hypothesis. , 2014, Journal of the American College of Cardiology.
[81] Jens Roat Kultima,et al. An integrated catalog of reference genes in the human gut microbiome , 2014, Nature Biotechnology.
[82] S. Granica,et al. Influence of Gut Microbiota-Derived Ellagitanninsʼ Metabolites Urolithins on Pro-Inflammatory Activities of Human Neutrophils , 2014, Planta Medica.
[83] R. Arce,et al. Biomarkers of cardiovascular disease are increased in untreated chronic periodontitis: a case control study. , 2014, Australian dental journal.
[84] Xiaojie Xu,et al. CVDHD: a cardiovascular disease herbal database for drug discovery and network pharmacology , 2013, Journal of Cheminformatics.
[85] Tatiana A. Tatusova,et al. RefSeq microbial genomes database: new representation and annotation strategy , 2013, Nucleic Acids Res..
[86] James R. Cole,et al. Ribosomal Database Project: data and tools for high throughput rRNA analysis , 2013, Nucleic Acids Res..
[87] P. Bork,et al. Richness of human gut microbiome correlates with metabolic markers , 2013, Nature.
[88] R. Tracy,et al. T Helper Cell Polarization in Healthy People: Implications for Cardiovascular Disease , 2013, Journal of Cardiovascular Translational Research.
[89] F. Tinahones,et al. Benefits of polyphenols on gut microbiota and implications in human health. , 2013, The Journal of nutritional biochemistry.
[90] M. Hattori,et al. Treg induction by a rationally selected mixture of Clostridia strains from the human microbiota , 2013, Nature.
[91] Xiang Li,et al. CHD@ZJU: a knowledgebase providing network-based research platform on coronary heart disease , 2013, Database J. Biol. Databases Curation.
[92] R. Krauss,et al. Supplemental materials for: Intestinal microbiota metabolism of L-carnitine, a nutrient in red meat, promotes atherosclerosis , 2013 .
[93] F. Tinahones,et al. Influence of red wine polyphenols and ethanol on the gut microbiota ecology and biochemical biomarkers. , 2012, The American journal of clinical nutrition.
[94] Albert Gatt,et al. BT-Nurse: computer generation of natural language shift summaries from complex heterogeneous medical data , 2011, J. Am. Medical Informatics Assoc..
[95] Brian J. Bennett,et al. Gut flora metabolism of phosphatidylcholine promotes cardiovascular disease , 2011, Nature.
[96] Hui Liu,et al. CADgene: a comprehensive database for coronary artery disease genes , 2010, Nucleic Acids Res..
[97] Rob Knight,et al. Human oral, gut, and plaque microbiota in patients with atherosclerosis , 2010, Proceedings of the National Academy of Sciences.
[98] R. Knight,et al. The Effect of Diet on the Human Gut Microbiome: A Metagenomic Analysis in Humanized Gnotobiotic Mice , 2009, Science Translational Medicine.
[99] Richard McClatchey,et al. A Data Model for Integrating Heterogeneous Medical Data in the Health-e-Child Project , 2008, HealthGrid.
[100] S. Parkar,et al. The potential influence of fruit polyphenols on colonic microflora and human gut health. , 2008, International journal of food microbiology.
[101] G. Canny,et al. Bacteria in the Intestine, Helpful Residents or Enemies from Within? , 2008, Infection and Immunity.
[102] C. Kwik-Uribe,et al. Flavanol monomer-induced changes to the human faecal microflora , 2007, British Journal of Nutrition.
[103] W. Ludwig,et al. SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB , 2007, Nucleic acids research.
[104] E. Olson,et al. A signature pattern of stress-responsive microRNAs that can evoke cardiac hypertrophy and heart failure , 2006, Proceedings of the National Academy of Sciences.
[105] M. Carrier,et al. Oenology: Red wine procyanidins and vascular health , 2006, Nature.
[106] F. Shanahan,et al. The gut flora as a forgotten organ , 2006, EMBO reports.
[107] J. Weissenbach,et al. Mutations in PCSK9 cause autosomal dominant hypercholesterolemia , 2003, Nature Genetics.
[108] Yang Wang,et al. An analysis of human microbe‐disease associations , 2017, Briefings Bioinform..
[109] Jiajia Chen,et al. Interactions Between Genetics, Lifestyle, and Environmental Factors for Healthcare. , 2017, Advances in experimental medicine and biology.