A histone fold TAF octamer within the yeast TFIID transcriptional coactivator

Gene activity in a eukaryotic cell is regulated by accessory factors to RNA polymerase II, which include the general transcription factor complex TFIID, composed of TBP and TBP-associated factors (TAFs). Three TAFs that contain histone fold motifs (yTAF17, yTAF60 and yTAF61) are critical for transcriptional regulation in the yeast Saccharomyces cerevisiae and are found in both TFIID and SAGA, a multicomponent histone acetyltransferase transcriptional coactivator. Although these three TAFs were proposed to assemble into a pseudooctamer complex, we find instead that yTAF17, yTAF60 and yTAF61 form a specific TAF octamer complex with a fourth TAF found in TFIID, yTAF48. We have reconstituted this complex in vitro and established that it is an octamer containing two copies each of the four components. Point mutations within the histone folds disrupt the octamer in vitro, and temperature-sensitive mutations in the histone folds can be specifically suppressed by overexpressing the other TAF octamer components in vivo. Our results indicate that the TAF octamer is similar both in stoichiometry and histone fold interactions to the histone octamer component of chromatin.

[1]  Zhengjian Zhang,et al.  Identification of a Yeast Transcription Factor IID Subunit, TSG2/TAF48* , 2000, The Journal of Biological Chemistry.

[2]  P. Komarnitsky,et al.  TFIID-specific yeast TAF40 is essential for the majority of RNA polymerase II-mediated transcription in vivo. , 1999, Genes & development.

[3]  R. Tjian,et al.  Drosophila TAFII40 interacts with both a VP16 activation domain and the basal transcription factor TFIIB , 1993, Cell.

[4]  Jun Qin,et al.  Histone-like TAFs within the PCAF Histone Acetylase Complex , 1998, Cell.

[5]  D. Moras,et al.  The Human TFIID Components TAFII135 and TAFII20 and the Yeast SAGA Components ADA1 and TAFII68 Heterodimerize to Form Histone-Like Pairs , 2000, Molecular and Cellular Biology.

[6]  B. Wang,et al.  The nucleosomal core histone octamer at 3.1 A resolution: a tripartite protein assembly and a left-handed superhelix. , 1991, Proceedings of the National Academy of Sciences of the United States of America.

[7]  D. Moras,et al.  Human TAFII28 and TAFII18 Interact through a Histone Fold Encoded by Atypical Evolutionary Conserved Motifs Also Found in the SPT3 Family , 1998, Cell.

[8]  K. Struhl,et al.  Yeast homologues of higher eukaryotic TFIID subunits. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[9]  P A Weil,et al.  Identification of Two Novel TAF Subunits of the YeastSaccharomyces cerevisiae TFIID Complex* , 2000, The Journal of Biological Chemistry.

[10]  A. Hoffmann,et al.  A histone octamer-like structure within TFIID , 1996, Nature.

[11]  R. Tjian,et al.  Molecular cloning and expression of the 32-kDa subunit of human TFIID reveals interactions with VP16 and TFIIB that mediate transcriptional activation. , 1995, Proceedings of the National Academy of Sciences of the United States of America.

[12]  J. Kirkwood,et al.  Proteins, amino acids and peptides as ions and dipolar ions , 1943 .

[13]  Song Tan,et al.  A modular polycistronic expression system for overexpressing protein complexes in Escherichia coli. , 2001, Protein expression and purification.

[14]  P. V. von Hippel,et al.  Calculation of protein extinction coefficients from amino acid sequence data. , 1989, Analytical biochemistry.

[15]  R. Tjian,et al.  p53 transcriptional activation mediated by coactivators TAFII40 and TAFII60. , 1995, Science.

[16]  T. Burke,et al.  The downstream core promoter element, DPE, is conserved from Drosophila to humans and is recognized by TAFII60 of Drosophila. , 1997, Genes & development.

[17]  T. Richmond,et al.  Crystal structure of the nucleosome core particle at 2.8 Å resolution , 1997, Nature.

[18]  L. Tora,et al.  Histone Folds Mediate Selective Heterodimerization of Yeast TAFII25 with TFIID Components yTAFII47 and yTAFII65 and with SAGA Component ySPT7 , 2001, Molecular and Cellular Biology.

[19]  R. Tjian,et al.  TAFs revisited: more data reveal new twists and confirm old ideas. , 2000, Gene.

[20]  Michael Hampsey,et al.  Molecular Genetics of the RNA Polymerase II General Transcriptional Machinery , 1998, Microbiology and Molecular Biology Reviews.

[21]  A. Levine,et al.  Human TAFII31 protein is a transcriptional coactivator of the p53 protein. , 1995, Proceedings of the National Academy of Sciences of the United States of America.

[22]  S. A. Johnston,et al.  Release of proteins and peptides from fusion proteins using a recombinant plant virus proteinase. , 1994, Analytical biochemistry.

[23]  D. Sterner,et al.  Acetylation of Histones and Transcription-Related Factors , 2000, Microbiology and Molecular Biology Reviews.

[24]  M. Horikoshi,et al.  Mechanism of action of a yeast activator: Direct effect of GAL4 derivatives on mammalian TFIID-promoter interactions , 1988, Cell.

[25]  John R Yates,et al.  A Subset of TAFIIs Are Integral Components of the SAGA Complex Required for Nucleosome Acetylation and Transcriptional Stimulation , 1998, Cell.

[26]  P. Komarnitsky,et al.  Histone-like TAFs are essential for transcription in vivo. , 1998, Molecular cell.

[27]  K. Bailey Proteins, Amino-Acids and Peptides as Ions and Dipolar Ions , 1945, Nature.

[28]  Steven L. Cohen,et al.  Structural similarity between TAFs and the heterotetrameric core of the histone octamer , 1996, Nature.

[29]  T. Richmond,et al.  DNA binding within the nucleosome core. , 1998, Current opinion in structural biology.