Mudskipper genomes provide insights into the terrestrial adaptation of amphibious fishes
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Ying Sun | Huanming Yang | Jian Wang | Jun Wang | X. Fang | Shuang Yang | B. Venkatesh | Yong Zhang | Yuxiang Li | Chao Bian | Shifeng Cheng | Guangyi Fan | Xin Liu | Jieming Chen | Guojie Zhang | V. Ravi | Chengcheng Shi | Xuanting Jiang | Jie Bai | Jie Liang | Chao Peng | Q. Shi | Zhiyong Huang | S. Coon | Xinxin You | Xinhui Zhang | Jia Li | Ying Qiu | Jintu Wang | Zhiqiang Ruan | Q. Zan | W. Hong | Shixi Chen | Xun Xu | Wujiao Li | Y. Tom Tang | Chengye Yang | Qian Mu | Jun Lu | Mingjun Fan | G. Polgar | Hui Qiang Yu | Zhongjian Liu | Guoqiang Zhang | Guojie Zhang | Zhong-Jian Liu | Jie Liang | Jie Liang | Xin Liu | Xin Liu | Qiong Shi | Qijie Zan | Xun Xu | Xin Liu | Jieming Chen | Ying Qiu | Wujiao Li | Ying Sun | Shixi Chen | Wanshu Hong | Yuxiang Li | Shifeng Cheng | Jie Liang | Y. T. Tang | Chengye Yang | Jun Lu | Mingjun Fan | Shuang Yang | Xiaodong Fang | Guojie Zhang | Yong Zhang | Hui Yu | Jian Wang | Huanming Yang | Jun Wang
[1] S. Endesfelder,et al. The molecular , 2017 .
[2] Jianzhi Zhang,et al. Genomic evidence for adaptation by gene duplication , 2014, Genome research.
[3] M. Romero,et al. Na+/H+ and Na+/NH+4 activities of zebrafish NHE3b expressed in Xenopus oocytes. , 2014, American journal of physiology. Regulatory, integrative and comparative physiology.
[4] M. Romero,et al. Na and Na /NH exchange activities of zebrafish NHE3b expressed in Xenopus oocytes , 2014 .
[5] Mi-young Seo,et al. Expression of ion transporters in gill mitochondrion-rich cells in Japanese eel acclimated to a wide range of environmental salinity. , 2013, Comparative biochemistry and physiology. Part A, Molecular & integrative physiology.
[6] F. Schaeffel,et al. An updated view on the role of dopamine in myopia. , 2013, Experimental eye research.
[7] Yusuke Ito,et al. Close Association of Carbonic Anhydrase (CA2a and CA15a), Na+/H+ Exchanger (Nhe3b), and Ammonia Transporter Rhcg1 in Zebrafish Ionocytes Responsible for Na+ Uptake , 2013, Front. Physiol..
[8] T. Itoh,et al. Coelacanth genomes reveal signatures for evolutionary transition from water to land , 2010, Genome research.
[9] David G Hendrickson,et al. Differential analysis of gene regulation at transcript resolution with RNA-seq , 2012, Nature Biotechnology.
[10] Jian Wang,et al. SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler , 2012, GigaScience.
[11] Bronwen L. Aken,et al. Analyses of pig genomes provide insight into porcine demography and evolution , 2012, Nature.
[12] Stefan Bauer,et al. TLR13 Recognizes Bacterial 23S rRNA Devoid of Erythromycin Resistance–Forming Modification , 2012, Science.
[13] Cystic fibrosis transmembrane conductance regulator in the gills of the climbing perch, Anabas testudineus, is involved in both hypoosmotic regulation during seawater acclimation and active ammonia excretion during ammonia exposure , 2012, Journal of Comparative Physiology B.
[14] Maxim Teslenko,et al. MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space , 2012, Systematic biology.
[15] P. Chakrabarty. The Biology of Gobies , 2011, Copeia.
[16] D. Higgins,et al. Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega , 2011, Molecular systems biology.
[17] M. Nei,et al. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. , 2011, Molecular biology and evolution.
[18] R. Durbin,et al. Inference of human population history from individual whole-genome sequences. , 2011, Nature.
[19] M. Zurita,et al. Open, repair and close again: chromatin dynamics and the response to UV-induced DNA damage. , 2011, DNA repair.
[20] A. Kato,et al. Differential expression of Na+-Cl- cotransporter and Na+-K+-Cl- cotransporter 2 in the distal nephrons of euryhaline and seawater pufferfishes. , 2011, American journal of physiology. Regulatory, integrative and comparative physiology.
[21] Walter Pirovano,et al. BIOINFORMATICS APPLICATIONS , 2022 .
[22] Le Kang,et al. De Novo Analysis of Transcriptome Dynamics in the Migratory Locust during the Development of Phase Traits , 2010, PloS one.
[23] A. Gnirke,et al. High-quality draft assemblies of mammalian genomes from massively parallel sequence data , 2010, Proceedings of the National Academy of Sciences.
[24] Jianzhi Zhang,et al. Pseudogenization of the umami taste receptor gene Tas1r1 in the giant panda coincided with its dietary switch to bamboo. , 2010, Molecular biology and evolution.
[25] C. Wood,et al. Rh glycoprotein expression is modulated in pufferfish (Takifugu rubripes) during high environmental ammonia exposure , 2010, Journal of Experimental Biology.
[26] A. Sali,et al. Function of human Rh based on structure of RhCG at 2.1 Å , 2010, Proceedings of the National Academy of Sciences.
[27] Cole Trapnell,et al. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. , 2010, Nature biotechnology.
[28] O. Gascuel,et al. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. , 2010, Systematic biology.
[29] Yoshihito Niimura,et al. Evolutionary dynamics of olfactory receptor genes in chordates: interaction between environments and genomic contents , 2009, Human Genomics.
[30] Philipp K. Janert,et al. Gnuplot in Action: Understanding Data with Graphs , 2009 .
[31] Toni Gabaldón,et al. trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses , 2009, Bioinform..
[32] Bo-Kai Liao,et al. Expression regulation of Na+-K+-ATPase alpha1-subunit subtypes in zebrafish gill ionocytes. , 2009, American journal of physiology. Regulatory, integrative and comparative physiology.
[33] Huanming Yang,et al. SNP detection for massively parallel whole-genome resequencing. , 2009, Genome research.
[34] P. Walsh,et al. Ammonia and urea transporters in gills of fish and aquatic crustaceans , 2009, Journal of Experimental Biology.
[35] Yoshihito Niimura,et al. On the Origin and Evolution of Vertebrate Olfactory Receptor Genes: Comparative Genome Analysis Among 23 Chordate Species , 2009, Genome biology and evolution.
[36] G. Crosa,et al. Multivariate characterisation of the habitats of seven species of Malayan mudskippers (Gobiidae: Oxudercinae) , 2009 .
[37] Lior Pachter,et al. Sequence Analysis , 2020, Definitions.
[38] Jianzhi Zhang,et al. Origin of the genetic components of the vomeronasal system in the common ancestor of all extant vertebrates. , 2009, Molecular biology and evolution.
[39] Keith Bradnam,et al. Assessing the gene space in draft genomes , 2008, Nucleic acids research.
[40] Haibao Tang,et al. Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps. , 2008, Genome research.
[41] J. Taylor,et al. The molecular basis of color vision in colorful fish: Four Long Wave-Sensitive (LWS) opsins in guppies (Poecilia reticulata) are defined by amino acid substitutions at key functional sites , 2008, BMC Evolutionary Biology.
[42] Bo-Kai Liao,et al. Carbonic anhydrase 2-like a and 15a are involved in acid-base regulation and Na+ uptake in zebrafish H+-ATPase-rich cells. , 2008, American journal of physiology. Cell physiology.
[43] Ruiqiang Li,et al. SOAP: short oligonucleotide alignment program , 2008, Bioinform..
[44] G. Baeck,et al. Lifestyle of Korean mudskipper Periophthalmus magnuspinnatus with reference to a congeneric species Periophthalmus modestus , 2008, Ichthyological Research.
[45] Livia S. Carvalho,et al. The FASEB Journal • Research Communication Functional characterization, tuning, and regulation , 2022 .
[46] Gerard Talavera,et al. Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments. , 2007, Systematic biology.
[47] Zhao Xu,et al. LTR_FINDER: an efficient tool for the prediction of full-length LTR retrotransposons , 2007, Nucleic Acids Res..
[48] Z. Ju,et al. Multiple tissue gene expression analyses in Japanese medaka (Oryzias latipes) exposed to hypoxia. , 2007, Comparative biochemistry and physiology. Toxicology & pharmacology : CBP.
[49] G. Weinstock,et al. Creating a honey bee consensus gene set , 2007, Genome Biology.
[50] J. Ngai,et al. The repertoire of olfactory C family G protein-coupled receptors in zebrafish: candidate chemosensory receptors for amino acids , 2006, BMC Genomics.
[51] Joel Dudley,et al. TimeTree: a public knowledge-base of divergence times among organisms , 2006, Bioinform..
[52] Burkhard Morgenstern,et al. AUGUSTUS: ab initio prediction of alternative transcripts , 2006, Nucleic Acids Res..
[53] Nello Cristianini,et al. CAFE: a computational tool for the study of gene family evolution , 2006, Bioinform..
[54] Y. Gothilf,et al. A possible new role for fish retinal serotonin-N-acetyltransferase-1 (AANAT1): Dopamine metabolism , 2006, Brain Research.
[55] Torsten Schwede,et al. BIOINFORMATICS Bioinformatics Advance Access published November 12, 2005 The SWISS-MODEL Workspace: A web-based environment for protein structure homology modelling , 2022 .
[56] G. van den Thillart,et al. Gene expression profiling of the long-term adaptive response to hypoxia in the gills of adult zebrafish. , 2005, American journal of physiology. Regulatory, integrative and comparative physiology.
[57] Ari Löytynoja,et al. An algorithm for progressive multiple alignment of sequences with insertions. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[58] J. Jurka,et al. Repbase Update, a database of eukaryotic repetitive elements , 2005, Cytogenetic and Genome Research.
[59] P. Brennan,et al. MHC Class I Peptides as Chemosensory Signals in the Vomeronasal Organ , 2004, Science.
[60] T. Speed,et al. GOstat: find statistically overrepresented Gene Ontologies within a group of genes. , 2004, Bioinformatics.
[61] Fyodor A Kondrashov,et al. The functional genomic distribution of protein divergence in two animal phyla: coevolution, genomic conflict, and constraint. , 2004, Genome research.
[62] R. Durbin,et al. GeneWise and Genomewise. , 2004, Genome research.
[63] Nansheng Chen,et al. Using RepeatMasker to Identify Repetitive Elements in Genomic Sequences , 2009, Current protocols in bioinformatics.
[64] Robert C. Edgar,et al. MUSCLE: multiple sequence alignment with high accuracy and high throughput. , 2004, Nucleic acids research.
[65] D. Schlaepfer,et al. Multiple connections link FAK to cell motility and invasion. , 2004, Current opinion in genetics & development.
[66] W. K. Kok,et al. The mudskippers Periophthalmodon schlosseri and Boleophthalmus boddaerti can tolerate environmental NH3 concentrations of 446 and 36µM, respectively , 2004, Fish Physiology and Biochemistry.
[67] S. Salzberg,et al. Versatile and open software for comparing large genomes , 2004, Genome Biology.
[68] O. Gascuel,et al. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. , 2003, Systematic biology.
[69] C. Stoeckert,et al. OrthoMCL: identification of ortholog groups for eukaryotic genomes. , 2003, Genome research.
[70] S. Yokoyama,et al. Molecular analysis of the evolutionary significance of ultraviolet vision in vertebrates , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[71] C. Ton,et al. Gene expression profile of zebrafish exposed to hypoxia during development. , 2003, Physiological genomics.
[72] J. M. Wilson,et al. Alkaline Environmental pH Has No Effect on Ammonia Excretion in the Mudskipper Periophthalmodon schlosseri but Inhibits Ammonia Excretion in the Related Species Boleophthalmus boddaerti , 2003, Physiological and Biochemical Zoology.
[73] C. Lüscher,et al. Pheromone detection mediated by a V1r vomeronasal receptor , 2002, Nature Neuroscience.
[74] W. J. Kent,et al. BLAT--the BLAST-like alignment tool. , 2002, Genome research.
[75] Kenneth M. Yamada,et al. Fibronectin, integrins, and growth control , 2001, Journal of cellular physiology.
[76] Rolf Apweiler,et al. InterProScan - an integration platform for the signature-recognition methods in InterPro , 2001, Bioinform..
[77] John P. Huelsenbeck,et al. MRBAYES: Bayesian inference of phylogenetic trees , 2001, Bioinform..
[78] S. Yokoyama,et al. The molecular genetics and evolution of red and green color vision in vertebrates. , 2001, Genetics.
[79] K. R. Markham,et al. Flavonoid characters contributing to the taxonomic revision of the Hebe parviflora complex. , 2001, Phytochemistry.
[80] G. Somero,et al. Hypoxia-induced gene expression profiling in the euryoxic fish Gillichthys mirabilis. , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[81] Fenglin Liu,et al. Distinct Roles of the Adaptor Protein Shc and Focal Adhesion Kinase in Integrin Signaling to ERK* , 2000, The Journal of Biological Chemistry.
[82] M. Ashburner,et al. Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.
[83] Rolf Apweiler,et al. The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000 , 2000, Nucleic Acids Res..
[84] M. Tremblay,et al. Roles of protein tyrosine phosphatases in cell migration and adhesion. , 1999, Biochemistry and cell biology = Biochimie et biologie cellulaire.
[85] G. Benson,et al. Tandem repeats finder: a program to analyze DNA sequences. , 1999, Nucleic acids research.
[86] Hiroyuki Ogata,et al. KEGG: Kyoto Encyclopedia of Genes and Genomes , 1999, Nucleic Acids Res..
[87] Ziheng Yang,et al. PAML: a program package for phylogenetic analysis by maximum likelihood , 1997, Comput. Appl. Biosci..
[88] S. Karlin,et al. Prediction of complete gene structures in human genomic DNA. , 1997, Journal of molecular biology.
[89] Rolf Apweiler,et al. The SWISS-PROT protein sequence data bank and its supplement TrEMBL , 1997, Nucleic Acids Res..
[90] D. Mindell. Fundamentals of molecular evolution , 1991 .
[91] D. Norren,et al. Blue light hazard in rat , 1990, Vision Research.
[92] Wen-Hsiung Li,et al. Fundamentals of molecular evolution , 1990 .
[93] Edward O. Murdy,et al. A taxonomic revision and cladistic analysis of the oxudercine gobies (Gobiidae : Oxudercinae) , 1989 .
[94] N. Saitou,et al. The neighbor-joining method: a new method for reconstructing phylogenetic trees. , 1987, Molecular biology and evolution.
[95] T. Vaughan,et al. Thermal ecology of the mudskippers, Periophthalmus koelreuteri (Pallas) and Boleophthalmus boddarti (Pallas) of Kuwait Bay , 1983 .