The Microbiota-Gut-Brain Axis.

The importance of the gut-brain axis in maintaining homeostasis has long been appreciated. However, the past 15 yr have seen the emergence of the microbiota (the trillions of microorganisms within and on our bodies) as one of the key regulators of gut-brain function and has led to the appreciation of the importance of a distinct microbiota-gut-brain axis. This axis is gaining ever more traction in fields investigating the biological and physiological basis of psychiatric, neurodevelopmental, age-related, and neurodegenerative disorders. The microbiota and the brain communicate with each other via various routes including the immune system, tryptophan metabolism, the vagus nerve and the enteric nervous system, involving microbial metabolites such as short-chain fatty acids, branched chain amino acids, and peptidoglycans. Many factors can influence microbiota composition in early life, including infection, mode of birth delivery, use of antibiotic medications, the nature of nutritional provision, environmental stressors, and host genetics. At the other extreme of life, microbial diversity diminishes with aging. Stress, in particular, can significantly impact the microbiota-gut-brain axis at all stages of life. Much recent work has implicated the gut microbiota in many conditions including autism, anxiety, obesity, schizophrenia, Parkinson's disease, and Alzheimer's disease. Animal models have been paramount in linking the regulation of fundamental neural processes, such as neurogenesis and myelination, to microbiome activation of microglia. Moreover, translational human studies are ongoing and will greatly enhance the field. Future studies will focus on understanding the mechanisms underlying the microbiota-gut-brain axis and attempt to elucidate microbial-based intervention and therapeutic strategies for neuropsychiatric disorders.

[1]  Ateequr Rehman,et al.  Smoking Cessation Induces Profound Changes in the Composition of the Intestinal Microbiota in Humans , 2013, PloS one.

[2]  S. Massart,et al.  Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa , 2010, Proceedings of the National Academy of Sciences.

[3]  A. Logan,et al.  Planetary Health: From the Wellspring of Holistic Medicine to Personal and Public Health Imperative , 2019, Explore.

[4]  M. Kaspari,et al.  A carbohydrate-rich diet increases social immunity in ants , 2014, Proceedings of the Royal Society B: Biological Sciences.

[5]  J. Doré,et al.  Dysbiosis in inflammatory bowel disease: a role for bacteriophages? , 2008, Gut.

[6]  Francis Boon,et al.  Neurobiological effects of intraventricular propionic acid in rats: Possible role of short chain fatty acids on the pathogenesis and characteristics of autism spectrum disorders , 2007, Behavioural Brain Research.

[7]  Xinglian Xu,et al.  Meat, dairy and plant proteins alter bacterial composition of rat gut bacteria , 2015, Scientific Reports.

[8]  Manisha Bhatia,et al.  Gut microbiota’s effect on mental health: The gut-brain axis , 2017, Clinics and practice.

[9]  G. D. Guthrie,et al.  gamma-Aminobutyric acid uptake by a bacterial system with neurotransmitter binding characteristics. , 1989, Proceedings of the National Academy of Sciences of the United States of America.

[10]  S. Rivest,et al.  MyD88 signaling in brain endothelial cells is essential for the neuronal activity and glucocorticoid release during systemic inflammation , 2008, Molecular Psychiatry.

[11]  K. Frankena,et al.  Diet and ADHD, Reviewing the Evidence: A Systematic Review of Meta-Analyses of Double-Blind Placebo-Controlled Trials Evaluating the Efficacy of Diet Interventions on the Behavior of Children with ADHD , 2017, PloS one.

[12]  T. Dinan,et al.  The microbiota-gut-brain axis in obesity. , 2017, The lancet. Gastroenterology & hepatology.

[13]  L. Pesti,et al.  The gnotobiotic animal as a tool in the study of host microbial relationships , 1971 .

[14]  Michelle K. Cahill,et al.  Progranulin Deficiency Promotes Circuit-Specific Synaptic Pruning by Microglia via Complement Activation , 2016, Cell.

[15]  M. Fujimiya,et al.  Short-chain fatty acids stimulate colonic transit via intraluminal 5-HT release in rats. , 2003, American journal of physiology. Regulatory, integrative and comparative physiology.

[16]  C. Cartier,et al.  Probiotic gut effect prevents the chronic psychological stress‐induced brain activity abnormality in mice , 2014, Neurogastroenterology and motility : the official journal of the European Gastrointestinal Motility Society.

[17]  Huiyu Dong,et al.  Occurrence and removal of antibiotics in ecological and conventional wastewater treatment processes: A field study. , 2016, Journal of environmental management.

[18]  Peter Cimermancic,et al.  A Systematic Analysis of Biosynthetic Gene Clusters in the Human Microbiome Reveals a Common Family of Antibiotics , 2014, Cell.

[19]  J. Macdonald,et al.  Vasoactive intestinal peptide acts via multiple signal pathways to regulate hippocampal NMDA receptors and synaptic transmission , 2009, Hippocampus.

[20]  J. Petrosino,et al.  Metagenomic Analyses of Alcohol Induced Pathogenic Alterations in the Intestinal Microbiome and the Effect of Lactobacillus rhamnosus GG Treatment , 2013, PloS one.

[21]  O. Witte,et al.  Impact of indomethacin on neuroinflammation and hippocampal neurogenesis in aged mice , 2014, Neuroscience Letters.

[22]  H. Rangwala,et al.  Colonic microbiome is altered in alcoholism. , 2012, American journal of physiology. Gastrointestinal and liver physiology.

[23]  Zhining Fan,et al.  Should we standardize the 1,700-year-old fecal microbiota transplantation? , 2012, The American journal of gastroenterology.

[24]  G. Mawe,et al.  Non-conventional features of peripheral serotonin signalling — the gut and beyond , 2017, Nature Reviews Gastroenterology &Hepatology.

[25]  Shervin Assari,et al.  The gut microbiome composition associates with bipolar disorder and illness severity. , 2017, Journal of psychiatric research.

[26]  C. Dejong,et al.  Short chain fatty acids exchange across the gut and liver in humans measured at surgery. , 2009, Clinical nutrition.

[27]  R. Dantzer,et al.  The taste of sickness: Lipopolysaccharide-induced finickiness in rats , 2005, Physiology & Behavior.

[28]  K. McCoy,et al.  The intestinal microbiota affect central levels of brain-derived neurotropic factor and behavior in mice. , 2011, Gastroenterology.

[29]  K. O'Halloran,et al.  Chronic intermittent hypoxia disrupts cardiorespiratory homeostasis and gut microbiota composition in adult male guinea-pigs , 2018, EBioMedicine.

[30]  J. Bienenstock,et al.  Antibiotics and the nervous system: More than just the microbes? , 2019, Brain, Behavior, and Immunity.

[31]  B. Wostmann,et al.  Aging in germ-free mice: life tables and lesions observed at natural death. , 1966, Journal of gerontology.

[32]  Ramin Khanabdali,et al.  An Update on Inflamm-Aging: Mechanisms, Prevention, and Treatment , 2016, Journal of immunology research.

[33]  S. Brookes,et al.  Anatomy and physiology of the enteric nervous system , 2000, Gut.

[34]  J. D. McGaugh,et al.  Glucocorticoid receptor activation in the rat nucleus of the solitary tract facilitates memory consolidation: involvement of the basolateral amygdala , 1999, The European journal of neuroscience.

[35]  Eric S. Lander,et al.  Natural history of the infant gut microbiome and impact of antibiotic treatment on bacterial strain diversity and stability , 2015, Science Translational Medicine.

[36]  E. Husebye Communication between CNS and ENS: do regulatory peptides play a role in control of sleep modulation of gastrointestinal motility? , 1997, Neurogastroenterology and motility : the official journal of the European Gastrointestinal Motility Society.

[37]  R. Richardson,et al.  Early experiences and the development of emotional learning systems in rats , 2013, Biology of Mood & Anxiety Disorders.

[38]  Samuel Han,et al.  Fecal Microbiota Transplant , 2016, Journal of intensive care medicine.

[39]  T. Dinan,et al.  Microbiota-Gut-Brain Axis: Modulator of Host Metabolism and Appetite. , 2017, The Journal of nutrition.

[40]  F. Gage,et al.  Running increases cell proliferation and neurogenesis in the adult mouse dentate gyrus , 1999, Nature Neuroscience.

[41]  R. Knight,et al.  Suppression of the gut microbiome ameliorates age‐related arterial dysfunction and oxidative stress in mice , 2019, The Journal of physiology.

[42]  F. Reimann,et al.  Enteroendocrine Cells: Chemosensors in the Intestinal Epithelium. , 2016, Annual review of physiology.

[43]  M. Kubo,et al.  The intestinal microbiota regulates body composition through NFIL3 and the circadian clock , 2017, Science.

[44]  C. Glass,et al.  Microbiome–microglia connections via the gut–brain axis , 2018, The Journal of experimental medicine.

[45]  F. Naclerio,et al.  Effect of a Protein Supplement on the Gut Microbiota of Endurance Athletes: A Randomized, Controlled, Double-Blind Pilot Study , 2018, Nutrients.

[46]  T. Dinan,et al.  Recent developments in understanding the role of the gut microbiota in brain health and disease , 2018, Annals of the New York Academy of Sciences.

[47]  J. Huizinga,et al.  Intestinal microbiota influence the early postnatal development of the enteric nervous system , 2014, Neurogastroenterology and motility : the official journal of the European Gastrointestinal Motility Society.

[48]  L. Fulton,et al.  Diet-induced obesity is linked to marked but reversible alterations in the mouse distal gut microbiome. , 2008, Cell host & microbe.

[49]  Liping Zhao,et al.  Structural resilience of the gut microbiota in adult mice under high-fat dietary perturbations , 2012, The ISME Journal.

[50]  B. D. De Winter,et al.  Neuroanatomy of lower gastrointestinal pain disorders. , 2014, World journal of gastroenterology.

[51]  J. Parkhill,et al.  Dominant and diet-responsive groups of bacteria within the human colonic microbiota , 2011, The ISME Journal.

[52]  L. Citrome,et al.  Weight Gain and Changes in Metabolic Variables following Olanzapine Treatment in Schizophrenia and Bipolar Disorder , 2011, Clinical drug investigation.

[53]  Andrew P. Smith,et al.  An Investigation of the Acute Effects of Oligofructose-Enriched Inulin on Subjective Wellbeing, Mood and Cognitive Performance , 2015, Nutrients.

[54]  K. Barrett,et al.  Modulation of the microbiota-gut-brain axis by probiotics in a murine model of inflammatory bowel disease. , 2016, American journal of physiology. Gastrointestinal and liver physiology.

[55]  G. Szabo,et al.  Reduced gut microbiome protects from alcohol-induced neuroinflammation and alters intestinal and brain inflammasome expression , 2018, Journal of Neuroinflammation.

[56]  M. Farhangi,et al.  A randomized controlled trial on the efficacy of resistant dextrin, as functional food, in women with type 2 diabetes: Targeting the hypothalamic-pituitary-adrenal axis and immune system. , 2017, Clinical nutrition.

[57]  C. Rosenfeld Microbiome Disturbances and Autism Spectrum Disorders , 2015, Drug Metabolism and Disposition.

[58]  S. Chua,et al.  A gut–brain axis regulating glucose metabolism mediated by bile acids and competitive fibroblast growth factor actions at the hypothalamus , 2017, Molecular metabolism.

[59]  E. Kandel,et al.  Stimulus-response relations and stability of mechanoreceptor and motor neurons mediating defensive gill-withdrawal reflex in Aplysia. , 1978, Journal of neurophysiology.

[60]  J. Cryan,et al.  The Microbiota, the Gut and the Brain in Eating and Alcohol Use Disorders: A ‘Ménage à Trois’? , 2017, Alcohol and alcoholism.

[61]  Yan Li,et al.  Characteristics of Proinflammatory Cytokines and Chemokines in Airways of Asthmatics: Relationships with Disease Severity and Infiltration of Inflammatory Cells , 2017, Chinese medical journal.

[62]  Jun Yu,et al.  Bacteriophage transfer during faecal microbiota transplantation in Clostridium difficile infection is associated with treatment outcome , 2017, Gut.

[63]  M. Surette,et al.  Structural & functional consequences of chronic psychosocial stress on the microbiome & host , 2016, Psychoneuroendocrinology.

[64]  B. Patel Electroanalytical approaches to study signaling mechanisms in the gastrointestinal tract , 2011, Neurogastroenterology and motility : the official journal of the European Gastrointestinal Motility Society.

[65]  M-J Butel,et al.  Probiotics, gut microbiota and health. , 2014, Medecine et maladies infectieuses.

[66]  G. O’Keeffe,et al.  Microbiota-gut-brain signalling in Parkinson's disease: Implications for non-motor symptoms. , 2016, Parkinsonism & related disorders.

[67]  Hugo Lövheim,et al.  Microbes and Alzheimer's Disease. , 2016, Journal of Alzheimer's disease : JAD.

[68]  T. Dinan,et al.  Gut microbiota: Microbiota and neuroimmune signalling—Metchnikoff to microglia , 2015, Nature Reviews Gastroenterology &Hepatology.

[69]  D. Alling,et al.  Binding of tricyclic antidepressant drugs to trophozoites of Giardia lamblia. , 1992, Comparative biochemistry and physiology. C, Comparative pharmacology and toxicology.

[70]  Shuzhao Li,et al.  The amino acid sensor GCN2 controls gut inflammation by inhibiting inflammasome activation , 2016, Nature.

[71]  C. Hill,et al.  Regulation of host weight gain and lipid metabolism by bacterial bile acid modification in the gut , 2014, Proceedings of the National Academy of Sciences.

[72]  T. Dinan,et al.  BDNF expression in the hippocampus of maternally separated rats: does Bifidobacterium breve 6330 alter BDNF levels? , 2011, Beneficial microbes.

[73]  S. Brookes,et al.  Extrinsic Sensory Innervation of the Gut: Structure and Function. , 2016, Advances in experimental medicine and biology.

[74]  E. Mitchell,et al.  Effect of early probiotic supplementation on childhood cognition, behaviour and mood a randomised, placebo‐controlled trial , 2018, Acta paediatrica.

[75]  J. de Vellis,et al.  Microglia in health and disease , 2005, Journal of neuroscience research.

[76]  D. Anthony,et al.  Neonatal prebiotic (BGOS) supplementation increases the levels of synaptophysin, GluN2A‐subunits and BDNF proteins in the adult rat hippocampus , 2016, Synapse.

[77]  Jun Sun,et al.  Target Intestinal Microbiota to Alleviate Disease Progression in Amyotrophic Lateral Sclerosis. , 2017, Clinical therapeutics.

[78]  K. Fassbender,et al.  Short chain fatty acids and gut microbiota differ between patients with Parkinson's disease and age-matched controls. , 2016, Parkinsonism & related disorders.

[79]  M. Salami,et al.  Clinical and metabolic response to probiotic supplementation in patients with multiple sclerosis: A randomized, double-blind, placebo-controlled trial. , 2017, Clinical nutrition.

[80]  G. Gloor,et al.  Stool substitute transplant therapy for the eradication of Clostridium difficile infection: ‘RePOOPulating’ the gut , 2013, Microbiome.

[81]  Nathalie M. Delzenne,et al.  Towards a more comprehensive concept for prebiotics , 2015, Nature Reviews Gastroenterology &Hepatology.

[82]  S. Lynch,et al.  The gut microbiome: Relationships with disease and opportunities for therapy , 2018, The Journal of experimental medicine.

[83]  Leszek Rudzki,et al.  Probiotic Lactobacillus Plantarum 299v decreases kynurenine concentration and improves cognitive functions in patients with major depression: A double-blind, randomized, placebo controlled study , 2019, Psychoneuroendocrinology.

[84]  H. Harmsen,et al.  Fecal Microbiota Composition and Frailty , 2005, Applied and Environmental Microbiology.

[85]  T. Dinan,et al.  Microbiota regulates visceral pain in the mouse , 2017, eLife.

[86]  Hartwig Wolburg,et al.  Aβ42‐driven cerebral amyloidosis in transgenic mice reveals early and robust pathology , 2006, EMBO reports.

[87]  G. Flores,et al.  Ontogeny of altered dendritic morphology in the rat prefrontal cortex, hippocampus, and nucleus accumbens following Cesarean delivery and birth anoxia , 2008, The Journal of comparative neurology.

[88]  H. Durand,et al.  Probiotic food supplement reduces stress-induced gastrointestinal symptoms in volunteers: a double-blind, placebo-controlled, randomized trial. , 2008, Nutrition research.

[89]  Ina Schuppe-Koistinen,et al.  Skeletal Muscle PGC-1α1 Modulates Kynurenine Metabolism and Mediates Resilience to Stress-Induced Depression , 2014, Cell.

[90]  C. Blanco,et al.  Obesity and the three‐year longitudinal course of bipolar disorder , 2013, Bipolar disorders.

[91]  J. Gostner,et al.  Kynurenine pathway metabolism and immune activation: Peripheral measurements in psychiatric and co-morbid conditions , 2017, Neuropharmacology.

[92]  F. Dazzi,et al.  Alterations of the olfactory-gustatory functions in patients with eating disorders. , 2013, European eating disorders review : the journal of the Eating Disorders Association.

[93]  E. Murphy,et al.  Exercise and associated dietary extremes impact on gut microbial diversity , 2014, Gut.

[94]  Harsh Panwar,et al.  Identification of lactic acid bacteria strains modulating incretin hormone secretion and gene expression in enteroendocrine cells , 2016 .

[95]  John J Totman,et al.  Postprandial changes in small bowel water content in healthy subjects and patients with irritable bowel syndrome. , 2010, Gastroenterology.

[96]  P. Cowen,et al.  Prebiotic intake reduces the waking cortisol response and alters emotional bias in healthy volunteers , 2014, Psychopharmacology.

[97]  Hae Ung Lee,et al.  Manipulation of microbiota reveals altered callosal myelination and white matter plasticity in a model of Huntington disease , 2019, Neurobiology of Disease.

[98]  P. Bonthuis,et al.  Acquisition of sexual receptivity: roles of chromatin acetylation, estrogen receptor-alpha, and ovarian hormones. , 2011, Endocrinology.

[99]  Junhua Li,et al.  Impact of early events and lifestyle on the gut microbiota and metabolic phenotypes in young school-age children , 2019, Microbiome.

[100]  M. Rugge,et al.  Antibiotic‐induced dysbiosis of the microbiota impairs gut neuromuscular function in juvenile mice , 2017, British journal of pharmacology.

[101]  A. Guastella,et al.  An Overview of Autism Spectrum Disorder, Heterogeneity and Treatment Options , 2017, Neuroscience Bulletin.

[102]  M. Nair,et al.  Effect of human immunodeficiency virus on blood-brain barrier integrity and function: an update , 2015, Front. Cell. Neurosci..

[103]  P. Bork,et al.  A human gut microbial gene catalogue established by metagenomic sequencing , 2010, Nature.

[104]  Hong Wang,et al.  Lipopolysaccharide-induced inflammation attenuates taste progenitor cell proliferation and shortens the life span of taste bud cells , 2010, BMC Neuroscience.

[105]  G. Wegener,et al.  Probiotic treatment reduces depressive-like behaviour in rats independently of diet , 2017, Psychoneuroendocrinology.

[106]  P. Brigidi,et al.  Through Ageing, and Beyond: Gut Microbiota and Inflammatory Status in Seniors and Centenarians , 2010, PloS one.

[107]  B. Wostmann,et al.  CHARACTERISTICS OF THE GERMFREE RAT , 1966 .

[108]  S. Tyski,et al.  Search of antimicrobial activity of selected non-antibiotic drugs. , 2002, Acta poloniae pharmaceutica.

[109]  C. Manichanh,et al.  Intestinal Microbiota And Diet in IBS: Causes, Consequences, or Epiphenomena? , 2015, The American Journal of Gastroenterology.

[110]  W. Garrett,et al.  Gut microbiota, metabolites and host immunity , 2016, Nature Reviews Immunology.

[111]  B. Engelhardt,et al.  The blood–brain and the blood–cerebrospinal fluid barriers: function and dysfunction , 2009, Seminars in Immunopathology.

[112]  A. Keshavarzian,et al.  The gut‐brain axis in Parkinson's disease: Possibilities for food‐based therapies , 2017, European journal of pharmacology.

[113]  Hua Zhu,et al.  Altered Gut Microbiota in a Mouse Model of Alzheimer's Disease. , 2017, Journal of Alzheimer's disease : JAD.

[114]  R. Ransohoff,et al.  The many roles of chemokines and chemokine receptors in inflammation. , 2006, The New England journal of medicine.

[115]  D. Kalman,et al.  Indoles from commensal bacteria extend healthspan , 2017, Proceedings of the National Academy of Sciences.

[116]  E. Severance,et al.  Gastroenterology Issues in Schizophrenia: Why the Gut Matters , 2015, Current Psychiatry Reports.

[117]  C. Manichanh,et al.  Reduced diversity of faecal microbiota in Crohn’s disease revealed by a metagenomic approach , 2005, Gut.

[118]  A. Keshavarzian,et al.  The Circadian Clock Mutation Promotes Intestinal Dysbiosis. , 2016, Alcoholism, clinical and experimental research.

[119]  H. Braak,et al.  Gastric α-synuclein immunoreactive inclusions in Meissner's and Auerbach's plexuses in cases staged for Parkinson's disease-related brain pathology , 2006, Neuroscience Letters.

[120]  Junjie Yu,et al.  Neuroprotective Effects of Clostridium butyricum against Vascular Dementia in Mice via Metabolic Butyrate , 2015, BioMed research international.

[121]  S. Ahrné,et al.  Oral Administration of Lactobacillus plantarum 299v Reduces Cortisol Levels in Human Saliva during Examination Induced Stress: A Randomized, Double-Blind Controlled Trial , 2016, International journal of microbiology.

[122]  B. Reusens,et al.  Involvement of endogenous glucagon-like peptide-1(7-36) amide on glycaemia-lowering effect of oligofructose in streptozotocin-treated rats. , 2005, The Journal of endocrinology.

[123]  I. Izquierdo,et al.  Preventing adolescent stress-induced cognitive and microbiome changes by diet , 2019, Proceedings of the National Academy of Sciences.

[124]  J. Herman,et al.  Neural regulation of endocrine and autonomic stress responses , 2009, Nature Reviews Neuroscience.

[125]  S. Finegold Desulfovibrio species are potentially important in regressive autism. , 2011, Medical hypotheses.

[126]  L. Öhman,et al.  Clinical trial: the effects of a fermented milk containing three probiotic bacteria in patients with irritable bowel syndrome – a randomized, double‐blind, controlled study , 2009, Alimentary pharmacology & therapeutics.

[127]  Bota Cui,et al.  Fecal microbiota transplantation relieve painful diabetic neuropathy , 2018, Medicine.

[128]  Huadong Zhou,et al.  Gut Microbiota is Altered in Patients with Alzheimer's Disease. , 2018, Journal of Alzheimer's disease : JAD.

[129]  M. Marmot,et al.  Education Attenuates the Association between Dietary Patterns and Cognition , 2009, Dementia and Geriatric Cognitive Disorders.

[130]  T. Hökfelt,et al.  Gut Commensal E. coli Proteins Activate Host Satiety Pathways following Nutrient-Induced Bacterial Growth. , 2016, Cell metabolism.

[131]  H. Sokol,et al.  The microbiota: an underestimated actor in radiation-induced lesions? , 2017, Gut.

[132]  N. D. de Roos,et al.  The effects of a multispecies probiotic on migraine and markers of intestinal permeability–results of a randomized placebo-controlled study , 2017, European Journal of Clinical Nutrition.

[133]  M. Surette,et al.  The interplay between the intestinal microbiota and the brain , 2012, Nature Reviews Microbiology.

[134]  J. Xaus,et al.  Is meconium from healthy newborns actually sterile? , 2008, Research in microbiology.

[135]  Jimmy D Bell,et al.  Differential Effects of Two Fermentable Carbohydrates on Central Appetite Regulation and Body Composition , 2012, PloS one.

[136]  K. Barrett,et al.  Probiotics normalize the gut-brain-microbiota axis in immunodeficient mice. , 2014, American journal of physiology. Gastrointestinal and liver physiology.

[137]  L. Buéno,et al.  Phenotypic changes in colonocytes following acute stress or activation of mast cells in mice: implications for delayed epithelial barrier dysfunction , 2005, Gut.

[138]  C. Mackay,et al.  Dietary Fiber and Bacterial SCFA Enhance Oral Tolerance and Protect against Food Allergy through Diverse Cellular Pathways. , 2016, Cell reports.

[139]  E. Purdom,et al.  Diversity of the Human Intestinal Microbial Flora , 2005, Science.

[140]  W. Wu,et al.  Fructo-oligosaccharide improved brain β-amyloid, β-secretase, cognitive function, and plasma antioxidant levels in D-galactose-treated Balb/cJ mice , 2017, Nutritional neuroscience.

[141]  Michael A. Rogawski,et al.  Neuroprotective and disease-modifying effects of the ketogenic diet , 2006, Behavioural Pharmacology.

[142]  S. Cremer,et al.  Ants Disinfect Fungus-Exposed Brood by Oral Uptake and Spread of Their Poison , 2013, Current Biology.

[143]  T. Dinan,et al.  Microbial regulation of microRNA expression in the amygdala and prefrontal cortex , 2017, Microbiome.

[144]  A. Heintz‐Buschart,et al.  The nasal and gut microbiome in Parkinson's disease and idiopathic rapid eye movement sleep behavior disorder , 2017, Movement disorders : official journal of the Movement Disorder Society.

[145]  Ines Thiele,et al.  Modeling metabolism of the human gut microbiome. , 2018, Current opinion in biotechnology.

[146]  E. Holmes,et al.  A Prospective Metagenomic and Metabolomic Analysis of the Impact of Exercise and/or Whey Protein Supplementation on the Gut Microbiome of Sedentary Adults , 2018, mSystems.

[147]  T. Dinan,et al.  Reframing the Teenage Wasteland: Adolescent Microbiota-Gut-Brain Axis , 2016, Canadian journal of psychiatry. Revue canadienne de psychiatrie.

[148]  T. Tomita,et al.  Effect of probiotic Bifidobacterium bifidum G9-1 on the relationship between gut microbiota profile and stress sensitivity in maternally separated rats , 2018, Scientific Reports.

[149]  J. Gordon,et al.  Olfactory receptor responding to gut microbiota-derived signals plays a role in renin secretion and blood pressure regulation , 2013, Proceedings of the National Academy of Sciences.

[150]  C. Knauf,et al.  Identification of an analgesic lipopeptide produced by the probiotic Escherichia coli strain Nissle 1917 , 2017, Nature Communications.

[151]  T. Dinan,et al.  Friends with social benefits: host-microbe interactions as a driver of brain evolution and development? , 2014, Front. Cell. Infect. Microbiol..

[152]  Marcus E. Raichle,et al.  Feeding the brain and nurturing the mind: Linking nutrition and the gut microbiota to brain development , 2015, Proceedings of the National Academy of Sciences.

[153]  C. Bernard Medical Classic. (Book Reviews: An Introduction to the Study of Experimental Medicine) , 1957 .

[154]  Christopher M. Taylor,et al.  Obese-type Gut Microbiota Induce Neurobehavioral Changes in the Absence of Obesity , 2015, Biological Psychiatry.

[155]  Ahmed A. Metwally,et al.  Analysis of the microbiome: Advantages of whole genome shotgun versus 16S amplicon sequencing. , 2016, Biochemical and biophysical research communications.

[156]  I. Grant,et al.  Cognitive Neuropsychology of HIV-Associated Neurocognitive Disorders , 2009, Neuropsychology Review.

[157]  R. von Bernhardi,et al.  Microglial cell dysregulation in brain aging and neurodegeneration , 2015, Front. Aging Neurosci..

[158]  William W. Van Treuren,et al.  Exercise Is More Effective at Altering Gut Microbial Composition and Producing Stable Changes in Lean Mass in Juvenile versus Adult Male F344 Rats , 2015, PloS one.

[159]  D. Kasper,et al.  How colonization by microbiota in early life shapes the immune system , 2016, Science.

[160]  D. Postma,et al.  Asthma at 8 years of age in children born by caesarean section , 2008, Thorax.

[161]  Liping Zhao,et al.  The Maturing Development of Gut Microbiota in Commercial Piglets during the Weaning Transition , 2017, Front. Microbiol..

[162]  W. Chey,et al.  Colonic motility abnormality in patients with irritable bowel syndrome exhibiting abdominal pain and diarrhea , 2000, American Journal of Gastroenterology.

[163]  D. Adriaensen,et al.  Structural organization and neuropeptide distribution in the mammalian enteric nervous system, with special attention to those components involved in mucosal reflexes. , 1997, Comparative biochemistry and physiology. Part A, Physiology.

[164]  M. Gershwin,et al.  Inflamm-aging: autoimmunity, and the immune-risk phenotype. , 2004, Autoimmunity reviews.

[165]  D. Rujescu,et al.  Identifying gene-environment interactions in schizophrenia: contemporary challenges for integrated, large-scale investigations. , 2014, Schizophrenia bulletin.

[166]  S. Blakemore,et al.  Development of the adolescent brain: implications for executive function and social cognition. , 2006 .

[167]  J. Furness Types of neurons in the enteric nervous system. , 2000, Journal of the autonomic nervous system.

[168]  M. Mattson,et al.  Modulation of taste sensitivity by GLP‐1 signaling , 2008, Journal of neurochemistry.

[169]  A. Bar-Or,et al.  Recirculating Intestinal IgA-Producing Cells Regulate Neuroinflammation via IL-10 , 2019, Cell.

[170]  C. Bole-Feysot,et al.  Sex-related effects of nutritional supplementation of Escherichia coli: relevance to eating disorders. , 2015, Nutrition.

[171]  Jeroen Raes,et al.  A metagenomic insight into our gut's microbiome , 2012, Gut.

[172]  Wei Li,et al.  Beneficial Microbes , 2015 .

[173]  F. Ponti,et al.  Plasticity in the enteric nervous system. , 1999, Gastroenterology.

[174]  Yaakov Stern,et al.  Mediterranean diet and risk for Alzheimer's disease , 2006, Annals of neurology.

[175]  O. Franco,et al.  Exercise induction of gut microbiota modifications in obese, non-obese and hypertensive rats , 2014, BMC Genomics.

[176]  J. Clemente,et al.  The Impact of the Gut Microbiota on Human Health: An Integrative View , 2012, Cell.

[177]  P. Hellings,et al.  A wide diversity of bacteria from the human gut produces and degrades biogenic amines , 2017, Microbial ecology in health and disease.

[178]  Dong-Hyun Kim,et al.  Immobilization stress-induced Escherichia coli causes anxiety by inducing NF-κB activation through gut microbiota disturbance , 2018, Scientific Reports.

[179]  L. Brandt,et al.  Is fecal microbiota transplantation (FMT) an effective treatment for patients with functional gastrointestinal disorders (FGID)? , 2015, Neurogastroenterology and motility : the official journal of the European Gastrointestinal Motility Society.

[180]  L. Guarente Mitochondria—A Nexus for Aging, Calorie Restriction, and Sirtuins? , 2008, Cell.

[181]  J. Delgado-García,et al.  Effects of a human milk oligosaccharide, 2'-fucosyllactose, on hippocampal long-term potentiation and learning capabilities in rodents. , 2015, The Journal of nutritional biochemistry.

[182]  Christopher E. McKinlay,et al.  Rethinking "enterotypes". , 2014, Cell host & microbe.

[183]  Brian L. Schmidt,et al.  Piphillin: Improved Prediction of Metagenomic Content by Direct Inference from Human Microbiomes , 2016, PloS one.

[184]  G. Glimstedt THE GERMFREE ANIMAL AS A RESEARCH TOOL , 1959, Annals of the New York Academy of Sciences.

[185]  Hongqin Zhang,et al.  Effects of β-diketone antibiotic mixtures on behavior of zebrafish (Danio rerio). , 2016, Chemosphere.

[186]  G. D’Antona,et al.  Branched-chain amino acids, mitochondrial biogenesis, and healthspan: an evolutionary perspective , 2011, Aging.

[187]  Mathias Leblanc,et al.  Cooperative Metabolic Adaptations in the Host Can Favor Asymptomatic Infection and Select for Attenuated Virulence in an Enteric Pathogen , 2018, Cell.

[188]  John F. Cryan,et al.  Immune modulation of the brain-gut-microbe axis , 2014, Front. Microbiol..

[189]  Jennifer M. Brulc,et al.  Prebiotic supplementation in frail older people affects specific gut microbiota taxa but not global diversity , 2019, Microbiome.

[190]  H. Forssberg,et al.  The bacterial peptidoglycan-sensing molecule Pglyrp2 modulates brain development and behavior , 2016, Molecular Psychiatry.

[191]  E. Agostoni,et al.  Functional and histological studies of the vagus nerve and its branches to the heart, lungs and abdominal viscera in the cat , 1957, The Journal of physiology.

[192]  T. Dinan,et al.  The probiotic Bifidobacterium infantis 35624 displays visceral antinociceptive effects in the rat , 2010, Neurogastroenterology and motility : the official journal of the European Gastrointestinal Motility Society.

[193]  J. Cryan,et al.  Host response: A trigger for neurodegeneration? , 2016, Nature Microbiology.

[194]  M. Kleerebezem,et al.  A double-blind, placebo-controlled, crossover-designed probiotic feeding study in children diagnosed with autistic spectrum disorders. , 2010 .

[195]  A. Macpherson,et al.  Interactions Between the Microbiota and the Immune System , 2012, Science.

[196]  B. Finlay,et al.  Gut microbiota in health and disease. , 2010, Physiological reviews.

[197]  S. Kang,et al.  Short chain fatty acids induce both effector and regulatory T cells by suppression of histone deacetylases and regulation of the mTOR-S6K pathway , 2014, Mucosal Immunology.

[198]  T. Dinan,et al.  Bifidobacteria exert strain‐specific effects on stress‐related behavior and physiology in BALB/c mice , 2014, Neurogastroenterology and motility : the official journal of the European Gastrointestinal Motility Society.

[199]  Y. Ringel,et al.  Alterations in composition and diversity of the intestinal microbiota in patients with diarrhea‐predominant irritable bowel syndrome , 2012, Neurogastroenterology and motility : the official journal of the European Gastrointestinal Motility Society.

[200]  D. Holtzman,et al.  Antibiotic-induced perturbations in gut microbial diversity influences neuro-inflammation and amyloidosis in a murine model of Alzheimer’s disease , 2016, Scientific Reports.

[201]  K. Fettucciari,et al.  Clostridium difficile-related postinfectious IBS: a case of enteroglial microbiological stalking and/or the solution of a conundrum? , 2018, Cellular and Molecular Life Sciences.

[202]  E. Ravussin,et al.  Circulating ghrelin levels are decreased in human obesity. , 2001, Diabetes.

[203]  E. Kandel,et al.  The Molecular and Systems Biology of Memory , 2014, Cell.

[204]  T. Dinan,et al.  Programming Bugs: Microbiota and the Developmental Origins of Brain Health and Disease , 2019, Biological Psychiatry.

[205]  Jennifer H. Pfeifer,et al.  Is adolescence the missing developmental link in Microbiome-Gut-Brain axis communication? , 2019, Developmental psychobiology.

[206]  Guoyao Wu,et al.  Amino acid metabolism in intestinal bacteria: links between gut ecology and host health. , 2011, Frontiers in bioscience.

[207]  K. Clément,et al.  The Effects of Gastrointestinal Surgery on Gut Microbiota: Potential Contribution to Improved Insulin Sensitivity , 2014, Current Atherosclerosis Reports.

[208]  Michael Maes,et al.  Bipolar Disorder: Role of Immune-Inflammatory Cytokines, Oxidative and Nitrosative Stress and Tryptophan Catabolites , 2015, Current Psychiatry Reports.

[209]  W. Harmsen,et al.  Interdigestive small bowel motility and duodenal bacterial overgrowth in experimental acute pancreatitis , 2003, Neurogastroenterology and motility : the official journal of the European Gastrointestinal Motility Society.

[210]  M. Uğurlu,et al.  The emergence of obsessive compulsive and compulsive buying symptomatology after acute stress and short-term use of ribavirin: case reports , 2013, Therapeutic advances in psychopharmacology.

[211]  Jeroen Raes,et al.  How informative is the mouse for human gut microbiota research? , 2015, Disease Models & Mechanisms.

[212]  S. Turroni,et al.  High-level adherence to a Mediterranean diet beneficially impacts the gut microbiota and associated metabolome , 2015, Gut.

[213]  M. Leboyer,et al.  Multi-hit early life adversity affects gut microbiota, brain and behavior in a sex-dependent manner , 2019, Brain, Behavior, and Immunity.

[214]  G. Hooiveld,et al.  Integrative analysis of gut microbiota composition, host colonic gene expression and intraluminal metabolites in aging C57BL/6J mice , 2018, Aging.

[215]  Z. Weizman,et al.  Effect of a Probiotic Infant Formula on Infections in Child Care Centers: Comparison of Two Probiotic Agents , 2005, Pediatrics.

[216]  K. Whelan,et al.  Dietary fiber intervention on gut microbiota composition in healthy adults: a systematic review and meta-analysis. , 2018, The American journal of clinical nutrition.

[217]  M. Liong,et al.  Lactobacillus plantarum DR7 alleviates stress and anxiety in adults: a randomised, double-blind, placebo-controlled study. , 2019, Beneficial microbes.

[218]  K. Pearson Mathematical contributions to the theory of evolution.—On a form of spurious correlation which may arise when indices are used in the measurement of organs , 1897, Proceedings of the Royal Society of London.

[219]  E. Dempsey,et al.  Evolution of gut microbiota composition from birth to 24 weeks in the INFANTMET Cohort , 2017, Microbiome.

[220]  F. Cavaleri,et al.  Potential Synergies of β-Hydroxybutyrate and Butyrate on the Modulation of Metabolism, Inflammation, Cognition, and General Health , 2018, Journal of nutrition and metabolism.

[221]  E. Brannigan,et al.  “Vaginal seeding” of infants born by caesarean section , 2016, British Medical Journal.

[222]  C. Lozupone,et al.  Gut Microbiota in Adolescents and the Association with Fatty Liver: the EPOCH Study , 2018, Pediatric Research.

[223]  E. Zoetendal,et al.  Duodenal infusion of donor feces for recurrent Clostridium difficile. , 2013, The New England journal of medicine.

[224]  H. Hui,et al.  Treat Your Bug Right , 2011, Front. Physio..

[225]  Dynamics of human gut microbiota and short-chain fatty acids in response to dietary interventions with three fermentable fibers , 2018 .

[226]  G. Gibson,et al.  Influence of galacto-oligosaccharide mixture (B-GOS) on gut microbiota, immune parameters and metabonomics in elderly persons , 2015, British Journal of Nutrition.

[227]  G. Macfarlane,et al.  Age and disease related changes in intestinal bacterial populations assessed by cell culture, 16S rRNA abundance, and community cellular fatty acid profiles , 2001, Gut.

[228]  B. Griffin,et al.  Gut Reactions: Breaking Down Xenobiotic–Microbiome Interactions , 2019, Pharmacological Reviews.

[229]  N. Paneth,et al.  A randomized synbiotic trial to prevent sepsis among infants in rural India , 2017, Nature.

[230]  Christoph H Borchers,et al.  Effect of Antibiotic Treatment on the Intestinal Metabolome , 2011, Antimicrobial Agents and Chemotherapy.

[231]  T. Dinan,et al.  Mid-life microbiota crises: middle age is associated with pervasive neuroimmune alterations that are reversed by targeting the gut microbiome , 2019, Molecular Psychiatry.

[232]  T. Schwartz,et al.  Expression of the short chain fatty acid receptor GPR41/FFAR3 in autonomic and somatic sensory ganglia , 2015, Neuroscience.

[233]  W. R. Wikoff,et al.  Metabolomics analysis reveals large effects of gut microflora on mammalian blood metabolites , 2009, Proceedings of the National Academy of Sciences.

[234]  T. Midtvedt,et al.  Short-chain fatty acids in germfree mice and rats. , 1986, The Journal of nutrition.

[235]  R. Richardson,et al.  From Resilience to Vulnerability: Mechanistic Insights into the Effects of Stress on Transitions in Critical Period Plasticity , 2013, Front. Psychiatry.

[236]  R. Britton,et al.  Mechanisms Underlying Microbial-Mediated Changes in Social Behavior in Mouse Models of Autism Spectrum Disorder , 2019, Neuron.

[237]  M. Safa,et al.  Lactobacilli and bifidobacteria ameliorate memory and learning deficits and oxidative stress in β-amyloid (1-42) injected rats. , 2018, Applied physiology, nutrition, and metabolism = Physiologie appliquee, nutrition et metabolisme.

[238]  H. Raybould,et al.  Leptin Resistance in Vagal Afferent Neurons Inhibits Cholecystokinin Signaling and Satiation in Diet Induced Obese Rats , 2012, PloS one.

[239]  Seppo Salminen,et al.  A possible link between early probiotic intervention and the risk of neuropsychiatric disorders later in childhood: a randomized trial , 2015, Pediatric Research.

[240]  J. Holst,et al.  Distal, not proximal, colonic acetate infusions promote fat oxidation and improve metabolic markers in overweight/obese men. , 2016, Clinical science.

[241]  R. Knight,et al.  Moving pictures of the human microbiome , 2011, Genome Biology.

[242]  Matthew H. Perkins,et al.  A Neural Circuit for Gut-Induced Reward , 2018, Cell.

[243]  J. Gordon,et al.  Lactobacillus reuteri induces gut intraepithelial CD4+CD8αα+ T cells , 2017, Science.

[244]  Wayne I. Doyle,et al.  Faecal bile acids are natural ligands of the mouse accessory olfactory system , 2016, Nature Communications.

[245]  G. Wegener,et al.  The microbial metabolite indole-3-propionic acid improves glucose metabolism in rats, but does not affect behaviour , 2018, Archives of physiology and biochemistry.

[246]  M. Parmentier,et al.  Functional Characterization of Human Receptors for Short Chain Fatty Acids and Their Role in Polymorphonuclear Cell Activation* , 2003, Journal of Biological Chemistry.

[247]  Sonia González,et al.  Nutrition and the gut microbiome in the elderly , 2017, Gut microbes.

[248]  H. Breer,et al.  Expression of odorant receptor Olfr78 in enteroendocrine cells of the colon , 2015, Cell and Tissue Research.

[249]  E. Rampersaud,et al.  Exercise Attenuates PCB-Induced Changes in the Mouse Gut Microbiome , 2013, Environmental health perspectives.

[250]  Rob Knight,et al.  Intermittent Hypoxia and Hypercapnia, a Hallmark of Obstructive Sleep Apnea, Alters the Gut Microbiome and Metabolome , 2018, mSystems.

[251]  Y. Taché,et al.  Stress-induced visceral analgesia assessed non-invasively in rats is enhanced by prebiotic diet. , 2012, World journal of gastroenterology.

[252]  J. Brenchley,et al.  Impact of High-Dose Multi-Strain Probiotic Supplementation on Neurocognitive Performance and Central Nervous System Immune Activation of HIV-1 Infected Individuals , 2017, Nutrients.

[253]  Ronan M. T. Fleming,et al.  Generation of genome-scale metabolic reconstructions for 773 members of the human gut microbiota , 2016, Nature Biotechnology.

[254]  J. Millichap,et al.  The Diet Factor in Attention-Deficit/Hyperactivity Disorder , 2012, Pediatrics.

[255]  L. Basso,et al.  Endogenous regulation of visceral pain via production of opioids by colitogenic CD4(+) T cells in mice. , 2014, Gastroenterology.

[256]  An intermittent hypercaloric diet alters gut microbiota, prefrontal cortical gene expression and social behaviours in rats , 2018, Nutritional neuroscience.

[257]  S. Dickerson,et al.  Acute stressors and cortisol responses: a theoretical integration and synthesis of laboratory research. , 2004, Psychological bulletin.

[258]  H. Hagan,et al.  Differences in the fecal microbiota of neonates born at home or in the hospital , 2018, Scientific Reports.

[259]  Bin Zhao,et al.  The Gut Microbiota and Alzheimer's Disease. , 2017, Journal of Alzheimer's disease : JAD.

[260]  P. Gibson,et al.  Manipulation of dietary short chain carbohydrates alters the pattern of gas production and genesis of symptoms in irritable bowel syndrome , 2010, Journal of gastroenterology and hepatology.

[261]  N. Sudo,et al.  Gut Dysbiosis in Patients with Anorexia Nervosa , 2015, PloS one.

[262]  Jacqueline N. Crawley,et al.  Mouse behavioral tasks relevant to autism: Phenotypes of 10 inbred strains , 2007, Behavioural Brain Research.

[263]  F. Bäckhed,et al.  Gut microbiota regulates bile acid metabolism by reducing the levels of tauro-beta-muricholic acid, a naturally occurring FXR antagonist. , 2013, Cell metabolism.

[264]  Jochen H Weishaupt,et al.  The fecal microbiome of ALS patients , 2018, Neurobiology of Aging.

[265]  E. Vining,et al.  The neuropharmacology of the ketogenic diet. , 2007, Pediatric neurology.

[266]  R. Burke,et al.  Clinical progression in Parkinson disease and the neurobiology of axons , 2010, Annals of neurology.

[267]  Eleazar Eskin,et al.  Genetic control of obesity and gut microbiota composition in response to high-fat, high-sucrose diet in mice. , 2013, Cell metabolism.

[268]  A. Zangen,et al.  Knockdown of brain-derived neurotrophic factor in specific brain sites precipitates behaviors associated with depression and reduces neurogenesis , 2009, Molecular Psychiatry.

[269]  H. Tuomisto A diversity of beta diversities: straightening up a concept gone awry. Part 1. Defining beta diversity as a function of alpha and gamma diversity , 2010 .

[270]  E. Mardis,et al.  An obesity-associated gut microbiome with increased capacity for energy harvest , 2006, Nature.

[271]  R. Dziarski,et al.  Bactericidal peptidoglycan recognition protein induces oxidative stress in Escherichia coli through a block in respiratory chain and increase in central carbon catabolism , 2017, Molecular microbiology.

[272]  I. Hozo,et al.  Peptidoglycan Recognition Proteins Kill Bacteria by Inducing Oxidative, Thiol, and Metal Stress , 2014, PLoS pathogens.

[273]  J. Bowen,et al.  The bidirectional interaction of the gut microbiome and the innate immune system: Implications for chemotherapy‐induced gastrointestinal toxicity , 2018, International journal of cancer.

[274]  S. Schoppe‐Sullivan,et al.  Maternal Obesity Is Associated with Alterations in the Gut Microbiome in Toddlers , 2014, PloS one.

[275]  S. Roman,et al.  Genes, emotions and gut microbiota: The next frontier for the gastroenterologist , 2017, World journal of gastroenterology.

[276]  G. Domselaar,et al.  The Gut Microbiome as a Target for IBD Treatment: Are We There Yet? , 2019, Current Treatment Options in Gastroenterology.

[277]  A. Gray,et al.  I. THE ORIGIN OF SPECIES BY MEANS OF NATURAL SELECTION , 1963 .

[278]  J. Prechtl,et al.  B-Afferents: A fundamental division of the nervous system mediating homeostasis? , 1990, Behavioral and Brain Sciences.

[279]  J. Molnár,et al.  Enhanced antibacterial effect of erythromycin in the presence of 3,5-dibenzoyl-1,4-dihydropyridines. , 2001, Anticancer research.

[280]  P. Baldi,et al.  Atlas of Circadian Metabolism Reveals System-wide Coordination and Communication between Clocks , 2018, Cell.

[281]  J. Ahmed,et al.  Sertraline enhances the activity of antimicrobial agents against pathogens of clinical relevance , 2015, Journal of Biological Research-Thessaloniki.

[282]  B. Bassler,et al.  A Host-Produced Quorum-Sensing Autoinducer Controls a Phage Lysis-Lysogeny Decision , 2019, Cell.

[283]  T. Dinan,et al.  Adult Hippocampal Neurogenesis Is Regulated by the Microbiome , 2015, Biological Psychiatry.

[284]  D. Meyer,et al.  A double-blind placebo-controlled study to establish the bifidogenic dose of inulin in healthy humans , 2007, European Journal of Clinical Nutrition.

[285]  A. Kraneveld,et al.  Intestinal inflammation in a murine model of autism spectrum disorders , 2014, Brain, Behavior, and Immunity.

[286]  J. Petrosino,et al.  Microbiota Modulate Behavioral and Physiological Abnormalities Associated with Neurodevelopmental Disorders , 2013, Cell.

[287]  T. Dinan,et al.  All Roads Lead to the miRNome: miRNAs Have a Central Role in the Molecular Pathophysiology of Psychiatric Disorders. , 2016, Trends in pharmacological sciences.

[288]  Jeffrey D Orth,et al.  What is flux balance analysis? , 2010, Nature Biotechnology.

[289]  B. Berg,et al.  The prebiotics 3′Sialyllactose and 6′Sialyllactose diminish stressor-induced anxiety-like behavior and colonic microbiota alterations: Evidence for effects on the gut–brain axis , 2015, Brain, Behavior, and Immunity.

[290]  J. Doré,et al.  Differences in Fecal Microbiota in Different European Study Populations in Relation to Age, Gender, and Country: a Cross-Sectional Study , 2006, Applied and Environmental Microbiology.

[291]  J. Olesen,et al.  The economic cost of brain disorders in Europe , 2012, European journal of neurology.

[292]  Angela C. Poole,et al.  Human Genetics Shape the Gut Microbiome , 2014, Cell.

[293]  D. Bottai,et al.  Movement impairment: Focus on the brain , 2016, Journal of neuroscience research.

[294]  A. Randich,et al.  Development, plasticity and modulation of visceral afferents , 2009, Brain Research Reviews.

[295]  L. Colzato,et al.  A randomized controlled trial to test the effect of multispecies probiotics on cognitive reactivity to sad mood , 2015, Brain, Behavior, and Immunity.

[296]  G. Tsujimoto,et al.  Bile acids promote glucagon-like peptide-1 secretion through TGR5 in a murine enteroendocrine cell line STC-1. , 2005, Biochemical and biophysical research communications.

[297]  T. van de Wiele,et al.  Chronic Psychosocial Stress and Gut Health in Children: Associations With Calprotectin and Fecal Short-Chain Fatty Acids , 2017, Psychosomatic medicine.

[298]  M. Kivimäki,et al.  Healthy dietary indices and risk of depressive outcomes: a systematic review and meta-analysis of observational studies , 2018, Molecular Psychiatry.

[299]  M. Oitzl,et al.  Brain Mineralocorticoid Receptor Function a , 1994, Annals of the New York Academy of Sciences.

[300]  A. Craig,et al.  How do you feel — now? The anterior insula and human awareness , 2009, Nature Reviews Neuroscience.

[301]  A. Badawy Tryptophan availability for kynurenine pathway metabolism across the life span: Control mechanisms and focus on aging, exercise, diet and nutritional supplements , 2017, Neuropharmacology.

[302]  M. Hernán,et al.  Primary Prevention of Cardiovascular Disease with a Mediterranean Diet Supplemented with Extra‐Virgin Olive Oil or Nuts , 2018, The New England journal of medicine.

[303]  D. Drucker,et al.  Lipopolysaccharides-Mediated Increase in Glucose-Stimulated Insulin Secretion: Involvement of the GLP-1 Pathway , 2014, Diabetes.

[304]  G. Sharon,et al.  The evolution of animals and plants via symbiosis with microorganisms. , 2010, Environmental microbiology reports.

[305]  Kazufumi Yoshihara,et al.  Critical role of gut microbiota in the production of biologically active, free catecholamines in the gut lumen of mice. , 2012, American journal of physiology. Gastrointestinal and liver physiology.

[306]  M. de Pedro,et al.  Peptidoglycan structure and architecture. , 2008, FEMS microbiology reviews.

[307]  K. Whelan,et al.  Irritable bowel syndrome and diet: where are we in 2018? , 2017, Current opinion in clinical nutrition and metabolic care.

[308]  T. Dinan,et al.  Microbiota and neurodevelopmental windows: implications for brain disorders. , 2014, Trends in molecular medicine.

[309]  L. Ferrucci,et al.  Commensal bacteria contribute to insulin resistance in aging by activating innate B1a cells , 2018, Science Translational Medicine.

[310]  F. Deane,et al.  A lifestyle intervention for primary care patients with depression and anxiety: A randomised controlled trial , 2015, Psychiatry Research.

[311]  C. K. Yao,et al.  Review article: insights into colonic protein fermentation, its modulation and potential health implications , 2016, Alimentary pharmacology & therapeutics.

[312]  David Julius,et al.  Enterochromaffin Cells Are Gut Chemosensors that Couple to Sensory Neural Pathways , 2017, Cell.

[313]  I. Tracey,et al.  Brain imaging approaches to the study of functional GI disorders: A Rome Working Team Report , 2009, Neurogastroenterology and motility : the official journal of the European Gastrointestinal Motility Society.

[314]  Christopher C. Overall,et al.  Microbiota alteration is associated with the development of stress-induced despair behavior , 2017, Scientific Reports.

[315]  F. Rohwer,et al.  Explaining microbial population genomics through phage predation , 2009, Nature Reviews Microbiology.

[316]  A. Logan,et al.  A randomized, double-blind, placebo-controlled pilot study of a probiotic in emotional symptoms of chronic fatigue syndrome , 2009, Gut pathogens.

[317]  V. Ambros microRNAs Tiny Regulators with Great Potential , 2001, Cell.

[318]  K. Shannon,et al.  Role of TLR4 in the gut-brain axis in Parkinson’s disease: a translational study from men to mice , 2018, Gut.

[319]  Commensal Bacteria Aid Mate-selection in the Fruit Fly, Bactrocera dorsalis , 2016, Microbial Ecology.

[320]  F. Guarner,et al.  Dietary inulin improves distal colitis induced by dextran sodium sulfate in the rat , 2001, American Journal of Gastroenterology.

[321]  P. Déchelotte,et al.  Anti-ghrelin immunoglobulins modulate ghrelin stability and its orexigenic effect in obese mice and humans , 2013, Nature Communications.

[322]  Sonia J. Lupien,et al.  Stress hormones and human memory function across the lifespan , 2005, Psychoneuroendocrinology.

[323]  R. Foster,et al.  Sleep and circadian rhythm disruption in psychiatric and neurodegenerative disease , 2010, Nature Reviews Neuroscience.

[324]  T. Dinan,et al.  Transferring the blues: Depression-associated gut microbiota induces neurobehavioural changes in the rat. , 2016, Journal of psychiatric research.

[325]  Gerard Clarke,et al.  Tryptophan degradation in irritable bowel syndrome: evidence of indoleamine 2,3-dioxygenase activation in a male cohort , 2009, BMC gastroenterology.

[326]  T. Schmidt,et al.  Dynamics of Human Gut Microbiota and Short-Chain Fatty Acids in Response to Dietary Interventions with Three Fermentable Fibers , 2018, mBio.

[327]  J. Pluznick Microbial Short-Chain Fatty Acids and Blood Pressure Regulation , 2017, Current Hypertension Reports.

[328]  G. Lynch,et al.  Restoration of long-term potentiation in middle-aged hippocampus after induction of brain-derived neurotrophic factor. , 2006, Journal of neurophysiology.

[329]  Yuanxiang Jin,et al.  Effects of environmental pollutants on gut microbiota. , 2017, Environmental pollution.

[330]  J. Nyby,et al.  Obsessive–compulsive-like behaviors in house mice are attenuated by a probiotic (Lactobacillus rhamnosus GG) , 2014, Behavioural pharmacology.

[331]  S. Guandalini,et al.  Antinociceptive effect of VSL#3 on visceral hypersensitivity in a rat model of irritable bowel syndrome: a possible action through nitric oxide pathway and enhance barrier function , 2011, Molecular and Cellular Biochemistry.

[332]  A. Armario,et al.  High doses of the histone deacetylase inhibitor sodium butyrate trigger a stress-like response , 2014, Neuropharmacology.

[333]  E. Chambers,et al.  Increased colonic propionate reduces anticipatory reward responses in the human striatum to high-energy foods123 , 2016, The American journal of clinical nutrition.

[334]  T. Dakka,et al.  Peptide YY, Glucagon-Like Peptide-1, and Neurotensin Responses to Luminal Factors in the Isolated Vascularly Perfused Rat Ileum. , 1998, Endocrinology.

[335]  I. Kaji,et al.  Roles of short-chain fatty acids receptors, GPR41 and GPR43 on colonic functions. , 2008, Journal of physiology and pharmacology : an official journal of the Polish Physiological Society.

[336]  J. Corander,et al.  The fecal microbiota of irritable bowel syndrome patients differs significantly from that of healthy subjects. , 2007, Gastroenterology.

[337]  T. Bredy,et al.  Histone modifications around individual BDNF gene promoters in prefrontal cortex are associated with extinction of conditioned fear. , 2007, Learning & memory.

[338]  E. Nestler,et al.  Alterations of the Host Microbiome Affect Behavioral Responses to Cocaine , 2016, Scientific Reports.

[339]  Joseph E LeDoux The Emotional Brain, Fear, and the Amygdala , 2003, Cellular and Molecular Neurobiology.

[340]  G. Tzortzis,et al.  Prebiotic feeding elevates central brain derived neurotrophic factor, N-methyl-d-aspartate receptor subunits and d-serine , 2013, Neurochemistry International.

[341]  T. R. Licht,et al.  Transfer of gut microbiota from lean and obese mice to antibiotic-treated mice , 2014, Scientific Reports.

[342]  G. Macfarlane,et al.  Regulation of short-chain fatty acid production , 2003, Proceedings of the Nutrition Society.

[343]  A. Garg,et al.  An Outbreak of Acute Bacterial Gastroenteritis Is Associated With an Increased Incidence of Irritable Bowel Syndrome in Children , 2010 .

[344]  Steven R. Tannenbaum,et al.  Arsenic Exposure Perturbs the Gut Microbiome and Its Metabolic Profile in Mice: An Integrated Metagenomics and Metabolomics Analysis , 2014, Environmental health perspectives.

[345]  E. Hade,et al.  Gut microbiome composition is associated with temperament during early childhood , 2015, Brain, Behavior, and Immunity.

[346]  M. Angley,et al.  Gastrointestinal microbiota and metabolite biomarkers in children with autism spectrum disorders. , 2014, Biomarkers in medicine.

[347]  Jens Roat Kultima,et al.  An integrated catalog of reference genes in the human gut microbiome , 2014, Nature Biotechnology.

[348]  Peng Xie,et al.  The gut microbiome from patients with schizophrenia modulates the glutamate-glutamine-GABA cycle and schizophrenia-relevant behaviors in mice , 2019, Science Advances.

[349]  R. Dilger,et al.  Dietary Sialyllactose Does Not Influence Measures of Recognition Memory or Diurnal Activity in the Young Pig , 2018, Nutrients.

[350]  R. J. Hine,et al.  Variations of brain histamine levels in germ-free and nephrectomized rats , 2004, Neurochemical Research.

[351]  G. Wegener,et al.  Probiotic treatment protects against the pro-depressant-like effect of high-fat diet in Flinders Sensitive Line rats , 2017, Brain, Behavior, and Immunity.

[352]  J. Sheridan,et al.  Monocyte trafficking to the brain with stress and inflammation: a novel axis of immune-to-brain communication that influences mood and behavior , 2015, Front. Neurosci..

[353]  S. Oğuz,et al.  Association between Parkinson's Disease and Helicobacter Pylori , 2016, Journal of clinical neurology.

[354]  T. Dinan,et al.  Revisiting Metchnikoff: Age-related alterations in microbiota-gut-brain axis in the mouse , 2017, Brain, Behavior, and Immunity.

[355]  Kazufumi Yoshihara,et al.  Regulation of gut luminal serotonin by commensal microbiota in mice , 2017, PloS one.

[356]  F. Bakar,et al.  A Glutamic Acid-Producing Lactic Acid Bacteria Isolated from Malaysian Fermented Foods , 2012, International journal of molecular sciences.

[357]  J Licinio,et al.  Gut microbiome remodeling induces depressive-like behaviors through a pathway mediated by the host’s metabolism , 2016, Molecular Psychiatry.

[358]  H. Rogers,et al.  Microbial cell walls and membranes , 1980 .

[359]  H. Sokol,et al.  Bifidobacterium animalis ssp. lactis CNCM-I2494 Restores Gut Barrier Permeability in Chronically Low-Grade Inflamed Mice , 2016, Front. Microbiol..

[360]  E. Zoetendal,et al.  Intestinal microbiota in functional bowel disorders: a Rome foundation report , 2012, Gut.

[361]  K. O'Farrell,et al.  Stress-related regulation of the kynurenine pathway: Relevance to neuropsychiatric and degenerative disorders , 2017, Neuropharmacology.

[362]  L. Spear The adolescent brain and age-related behavioral manifestations , 2000, Neuroscience & Biobehavioral Reviews.

[363]  F. Sundler,et al.  Physiological significance of ECL-cell histamine. , 1998, The Yale journal of biology and medicine.

[364]  W. Seaman Faculty Opinions recommendation of A role for fungal {beta}-glucans and their receptor Dectin-1 in the induction of autoimmune arthritis in genetically susceptible mice. , 2005 .

[365]  A. Palva,et al.  Composition and temporal stability of gastrointestinal microbiota in irritable bowel syndrome--a longitudinal study in IBS and control subjects. , 2005, FEMS immunology and medical microbiology.

[366]  J. Fox,et al.  The Altered Schaedler Flora: Continued Applications of a Defined Murine Microbial Community. , 2015, ILAR journal.

[367]  Gabriel Herrera-López,et al.  Probiotics and Prebiotics as a Therapeutic Strategy to Improve Memory in a Model of Middle-Aged Rats , 2018, Front. Aging Neurosci..

[368]  G. Wilcock,et al.  Herpes simplex virus type 1 in brain and risk of Alzheimer's disease , 1997, The Lancet.

[369]  Takao K. Hensch,et al.  Re-opening Windows: Manipulating Critical Periods for Brain Development , 2012, Cerebrum : the Dana forum on brain science.

[370]  Xianlin Han,et al.  Altered bile acid profile associates with cognitive impairment in Alzheimer's disease—An emerging role for gut microbiome , 2018, Alzheimer's & Dementia.

[371]  Sterling C. Johnson,et al.  Caloric Restriction Delays Disease Onset and Mortality in Rhesus Monkeys , 2009, Science.

[372]  S. Mazmanian,et al.  An Immunomodulatory Molecule of Symbiotic Bacteria Directs Maturation of the Host Immune System , 2005, Cell.

[373]  N. Paneth,et al.  Michigan cohorts to determine associations of maternal pre-pregnancy body mass index with pregnancy and infant gastrointestinal microbial communities: Late pregnancy and early infancy , 2019, PloS one.

[374]  J. Galmiche,et al.  Short-chain fatty acids modify colonic motility through nerves and polypeptide YY release in the rat. , 1998, American journal of physiology. Gastrointestinal and liver physiology.

[375]  Aidan Coffey,et al.  Movers and shakers , 2013, Gut microbes.

[376]  P. Scully,et al.  Tryptophan catabolism in females with irritable bowel syndrome: relationship to interferon‐gamma, severity of symptoms and psychiatric co‐morbidity , 2008, Neurogastroenterology and motility : the official journal of the European Gastrointestinal Motility Society.

[377]  Vikramjeet Singh,et al.  The gut microbiome primes a cerebroprotective immune response after stroke , 2018, Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism.

[378]  V. Apostolopoulos,et al.  Short-Chain Fatty Acids Regulate Cytokines and Th17/Treg Cells in Human Peripheral Blood Mononuclear Cells in vitro , 2016, Immunological investigations.

[379]  R. Gibbs,et al.  Temporal development of the gut microbiome in early childhood from the TEDDY study , 2018, Nature.

[380]  Andmorgan R. Fisher,et al.  Modulation of the Metabiome by Rifaximin in Patients with Cirrhosis and Minimal Hepatic Encephalopathy , 2013, PloS one.

[381]  T. Dinan,et al.  The neuropharmacology of butyrate: The bread and butter of the microbiota-gut-brain axis? , 2016, Neurochemistry International.

[382]  J. Knierim The hippocampus , 2015, Current Biology.

[383]  S. Masino,et al.  Metabolism and epilepsy: Ketogenic diets as a homeostatic link , 2019, Brain Research.

[384]  R. Coda,et al.  Synthesis of γ-Aminobutyric Acid by Lactic Acid Bacteria Isolated from a Variety of Italian Cheeses , 2007, Applied and Environmental Microbiology.

[385]  W Poewe,et al.  Non‐motor symptoms in Parkinson’s disease , 2008, European journal of neurology.

[386]  E. Pomare,et al.  Portal and peripheral blood short chain fatty acid concentrations after caecal lactulose instillation at surgery. , 1992, Gut.

[387]  E. Hsiao,et al.  The Gut Microbiota Mediates the Anti-Seizure Effects of the Ketogenic Diet , 2018, Cell.

[388]  G. Frost,et al.  Oxyntomodulin increases energy expenditure in addition to decreasing energy intake in overweight and obese humans: a randomised controlled trial , 2006, International Journal of Obesity.

[389]  A. Aluwihare An ultrastructural study of the effect of neomycin on the colon in the human subject and in the conventional and the germ-free mouse , 1971, Gut.

[390]  J. Doré,et al.  TLR ligands and butyrate increase Pyy expression through two distinct but inter‐regulated pathways , 2017, Cellular microbiology.

[391]  F. Marotta,et al.  Possible correlation between gut microbiota and immunity among healthy middle-aged and elderly people in southwest China , 2018, Gut Pathogens.

[392]  L. Tecott,et al.  Serotonin and the regulation of mammalian energy balance , 2013, Front. Neurosci..

[393]  D. Ostatníková,et al.  Gastrointestinal microbiota in children with autism in Slovakia , 2015, Physiology & Behavior.

[394]  I. Amit,et al.  Microbiome Influences Prenatal and Adult Microglia in a Sex-Specific Manner , 2017, Cell.

[395]  M. Herkenham,et al.  Therapeutic effects of stress-programmed lymphocytes transferred to chronically stressed mice , 2016, Progress in Neuro-Psychopharmacology and Biological Psychiatry.

[396]  J. Tap,et al.  Gut microbiota after gastric bypass in human obesity: increased richness and associations of bacterial genera with adipose tissue genes. , 2013, The American journal of clinical nutrition.

[397]  T. Dinan,et al.  Mood by microbe: towards clinical translation , 2016, Genome Medicine.

[398]  H. Kapfhammer,et al.  Epigenetics of the molecular clock and bacterial diversity in bipolar disorder , 2019, Psychoneuroendocrinology.

[399]  S. Mazmanian,et al.  Proinflammatory T-cell responses to gut microbiota promote experimental autoimmune encephalomyelitis , 2010, Proceedings of the National Academy of Sciences.

[400]  D. Val-Laillet,et al.  Oral sodium butyrate impacts brain metabolism and hippocampal neurogenesis, with limited effects on gut anatomy and function in pigs , 2017, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[401]  A. Pérez-Villalba,et al.  Bifidobacterium CECT 7765 modulates early stress-induced immune, neuroendocrine and behavioral alterations in mice , 2017, Brain, Behavior, and Immunity.

[402]  Malcolm Kohler,et al.  Challenges and perspectives in obstructive sleep apnoea , 2018, European Respiratory Journal.

[403]  J. Molnár,et al.  Interaction between 3,5-diacetyl-1,4-dihydropyridines and ampicillin, and erythromycin on different E. coli strains. , 2002, International journal of antimicrobial agents.

[404]  E. Rosenberg,et al.  Role of microorganisms in the evolution of animals and plants: the hologenome theory of evolution. , 2008, FEMS microbiology reviews.

[405]  C. Pariante Why are depressed patients inflamed? A reflection on 20 years of research on depression, glucocorticoid resistance and inflammation , 2017, European Neuropsychopharmacology.

[406]  Steven E. Arnold,et al.  Brain insulin resistance in type 2 diabetes and Alzheimer disease: concepts and conundrums , 2018, Nature Reviews Neurology.

[407]  J. Bienenstock,et al.  The gut microbiome restores intrinsic and extrinsic nerve function in germ‐free mice accompanied by changes in calbindin , 2015, Neurogastroenterology and motility : the official journal of the European Gastrointestinal Motility Society.

[408]  J. Foster,et al.  The microbiome is essential for normal gut intrinsic primary afferent neuron excitability in the mouse , 2013, Neurogastroenterology and motility : the official journal of the European Gastrointestinal Motility Society.

[409]  Paul Theodor Pyl,et al.  Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer , 2019, Nature Medicine.

[410]  C. Franceschi,et al.  Plasticity of lifelong calorie‐restricted C57BL/6J mice in adapting to a medium‐fat diet intervention at old age , 2017, Aging cell.

[411]  T. Dinan,et al.  Mind-altering Microorganisms: the Impact of the Gut Microbiota on Brain and Behaviour , 2022 .

[412]  E. Benarroch,et al.  Enteric nervous system , 2007, Neurology.

[413]  D. Panagiotakos,et al.  Adherence to the Mediterranean diet is associated with the gut microbiota pattern and gastrointestinal characteristics in an adult population , 2017, British Journal of Nutrition.

[414]  A. Keshavarzian,et al.  Circadian Rhythm and the Gut Microbiome. , 2016, International review of neurobiology.

[415]  B. Gustafsson Germ-free rearing of rats. , 1946, Acta anatomica.

[416]  K. Karimi,et al.  Gut commensal microvesicles reproduce parent bacterial signals to host immune and enteric nervous systems , 2015, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[417]  Jiachao Zhang,et al.  Carbohydrate Staple Food Modulates Gut Microbiota of Mongolians in China , 2017, Front. Microbiol..

[418]  T. Spector,et al.  Detection of stable community structures within gut microbiota co-occurrence networks from different human populations , 2018, PeerJ.

[419]  E. Dempsey,et al.  Perinatal factors affect the gut microbiota up to four years after birth , 2019, Nature Communications.

[420]  S. Bordenstein,et al.  Fecal Transplants: What Is Being Transferred? , 2016, PLoS biology.

[421]  T. Borody,et al.  Bowel‐flora alteration: a potential cure for inflammatory bowel disease and irritable bowel syndrome? , 1989, The Medical journal of Australia.

[422]  K. Sanders,et al.  Muscarinic activation of Ca2+‐activated Cl− current in interstitial cells of Cajal , 2011, The Journal of physiology.

[423]  R. Knight,et al.  Diversity, stability and resilience of the human gut microbiota , 2012, Nature.

[424]  N. Cenac Protease-activated receptors as therapeutic targets in visceral pain. , 2013, Current neuropharmacology.

[425]  S. Bilbo,et al.  The immune system and developmental programming of brain and behavior , 2012, Frontiers in Neuroendocrinology.

[426]  M. Monk,et al.  The kinetics of derepression of prophage λ following ultraviolet irradiation of lysogenic cells , 2004, Molecular and General Genetics MGG.

[427]  R. Knight,et al.  Gut Microbiota in the First 2 Years of Life and the Association with Body Mass Index at Age 12 in a Norwegian Birth Cohort , 2018, mBio.

[428]  Luis Carrasco,et al.  Human and Microbial Proteins From Corpora Amylacea of Alzheimer’s Disease , 2018, Scientific Reports.

[429]  M. Swain,et al.  Cerebral Microglia Recruit Monocytes into the Brain in Response to Tumor Necrosis Factorα Signaling during Peripheral Organ Inflammation , 2009, The Journal of Neuroscience.

[430]  S. Kliewer,et al.  Regulation of antibacterial defense in the small intestine by the nuclear bile acid receptor. , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[431]  Hengyi Xu,et al.  A high γ-aminobutyric acid-producingLactobacillus brevis isolated from Chinese traditionalpaocai , 2008, Annals of Microbiology.

[432]  W. Lukiw,et al.  Microbial Sources of Amyloid and Relevance to Amyloidogenesis and Alzheimer’s Disease (AD) , 2015, Journal of Alzheimer's disease & Parkinsonism.

[433]  I. Rowland,et al.  The impact of date palm fruits and their component polyphenols, on gut microbial ecology, bacterial metabolites and colon cancer cell proliferation , 2014, Journal of nutritional science.

[434]  J. Bishop,et al.  Review of risperidone for the treatment of pediatric and adolescent bipolar disorder and schizophrenia , 2008, Neuropsychiatric disease and treatment.

[435]  J. Costerton,et al.  Structure and function of the cell envelope of gram-negative bacteria , 1974, Bacteriological reviews.

[436]  Yan He,et al.  Dysbiosis of Gut Microbiota With Reduced Trimethylamine‐N‐Oxide Level in Patients With Large‐Artery Atherosclerotic Stroke or Transient Ischemic Attack , 2015, Journal of the American Heart Association.

[437]  O. Andreassen,et al.  Dyslipidemia Independent of Body Mass in Antipsychotic-Treated Patients Under Real-Life Conditions , 2008, Journal of clinical psychopharmacology.

[438]  J. Gunstad,et al.  Preliminary Evidence for an Association Between the Composition of the Gut Microbiome and Cognitive Function in Neurologically Healthy Older Adults , 2017, Journal of the International Neuropsychological Society.

[439]  F. Jacka Diätumstellung gegen Depression , 2017, DMW - Deutsche Medizinische Wochenschrift.

[440]  H. Matsuzaki,et al.  Administration of Non-Absorbable Antibiotics to Pregnant Mice to Perturb the Maternal Gut Microbiota Is Associated with Alterations in Offspring Behavior , 2016, PloS one.

[441]  V. Vanguri The Adaptive Immune System , 2014 .

[442]  J. Herman,et al.  Regulation of the Hypothalamic-Pituitary-Adrenocortical Stress Response. , 2016, Comprehensive Physiology.

[443]  J. Versalovic,et al.  Histamine H2 Receptor-Mediated Suppression of Intestinal Inflammation by Probiotic Lactobacillus reuteri , 2015, mBio.

[444]  M. Bailey,et al.  Stress and the Commensal Microbiota: Importance in Parturition and Infant Neurodevelopment , 2015, Front. Psychiatry.

[445]  G. Phillips,et al.  Altered Schaedler flora mice: A defined microbiota animal model to study the microbiota-gut-brain axis , 2019, Behavioural Brain Research.

[446]  S. Bloom,et al.  Gut Hormones and Appetite Control: A Focus on PYY and GLP-1 as Therapeutic Targets in Obesity , 2012, Gut and liver.

[447]  K. Petersen,et al.  Acetate mediates a microbiome-brain-β cell axis promoting metabolic syndrome , 2016, Nature.

[448]  A. Enomoto,et al.  Novel liver‐specific organic anion transporter OAT7 that operates the exchange of sulfate conjugates for short chain fatty acid butyrate , 2007, Hepatology.

[449]  M. Carabotti,et al.  The gut-brain axis: interactions between enteric microbiota, central and enteric nervous systems , 2015, Annals of gastroenterology.

[450]  R. Knight,et al.  Bacterial Community Variation in Human Body Habitats Across Space and Time , 2009, Science.

[451]  O. Koren,et al.  Low-dose penicillin in early life induces long-term changes in murine gut microbiota, brain cytokines and behavior , 2017, Nature Communications.

[452]  S. Rapoport,et al.  Kinetics of Neutral Amino Acid Transport Across the Blood‐Brain Barrier , 1987, Journal of neurochemistry.

[453]  L. Schwingshackl,et al.  Adherence to Mediterranean Diet and Risk of Cancer: An Updated Systematic Review and Meta-Analysis , 2017, Nutrients.

[454]  Angel V Peterchev,et al.  Relative abundance of Akkermansia spp. and other bacterial phylotypes correlates with anxiety- and depressive-like behavior following social defeat in mice , 2019, Scientific Reports.

[455]  R. S. Jones Tryptamine: a neuromodulator or neurotransmitter in mammalian brain? , 1982, Progress in Neurobiology.

[456]  M. Coates,et al.  Review article: intestinal serotonin signalling in irritable bowel syndrome , 2006, Alimentary pharmacology & therapeutics.

[457]  J. Molnár,et al.  Synergistic effect of promethazine with gentamycin in frequently recurring pyelonephritis , 2006, International Urology and Nephrology.

[458]  A. E. Ritchie,et al.  Biosynthesis of androgen from cortisol by a species of Clostridium recovered from human fecal flora. , 1984, The Journal of infectious diseases.

[459]  Manuel Serrano,et al.  The Hallmarks of Aging , 2013, Cell.

[460]  Mallikarjuna Nimgampalle,et al.  Anti-Alzheimer Properties of Probiotic, Lactobacillus plantarum MTCC 1325 in Alzheimer's Disease induced Albino Rats. , 2017, Journal of clinical and diagnostic research : JCDR.

[461]  S. Tomičić,et al.  Influence of early gut microbiota on the maturation of childhood mucosal and systemic immune responses , 2009, Clinical and experimental allergy : journal of the British Society for Allergy and Clinical Immunology.

[462]  C. Franceschi,et al.  Neuroinflammation and the genetics of Alzheimer’s disease: The search for a pro-inflammatory phenotype , 2001, Aging.

[463]  A. Kurilshikov,et al.  Environment dominates over host genetics in shaping human gut microbiota , 2018, Nature.

[464]  R. Farré,et al.  Chronic Sleep Disruption Alters Gut Microbiota, Induces Systemic and Adipose Tissue Inflammation and Insulin Resistance in Mice , 2016, Scientific Reports.

[465]  N. Delzenne,et al.  A dysbiotic subpopulation of alcohol-dependent subjects , 2015, Gut microbes.

[466]  B. Greenwood-Van Meerveld,et al.  Effects of Bifidobacterium infantis 35624 on Post-Inflammatory Visceral Hypersensitivity in the Rat , 2011, Digestive Diseases and Sciences.

[467]  Rudolph E. Tanzi,et al.  Alzheimer’s Disease-Associated β-Amyloid Is Rapidly Seeded by Herpesviridae to Protect against Brain Infection , 2018, Neuron.

[468]  T. Crow,et al.  Induction of beta (A4)-amyloid in primates by injection of Alzheimer's disease brain homogenate. Comparison with transmission of spongiform encephalopathy. , 1994, Molecular neurobiology.

[469]  Itai Sharon,et al.  Personalized Gut Mucosal Colonization Resistance to Empiric Probiotics Is Associated with Unique Host and Microbiome Features , 2018, Cell.

[470]  A. Burns,et al.  Developmental and Postnatal Changes in the Enteric Nervous System , 2013 .

[471]  A. Jong,et al.  Cellular mechanisms of microbial proteins contributing to invasion of the blood–brain barrier , 2001, Cellular microbiology.

[472]  Cedric L. Williams,et al.  Functional interactions between the nucleus tractus solitarius (NTS) and nucleus accumbens shell in modulating memory for arousing experiences , 2008, Neurobiology of Learning and Memory.

[473]  A. Vivas,et al.  A Pilot Randomized Controlled Trial to Explore Cognitive and Emotional Effects of Probiotics in Fibromyalgia , 2018, Scientific Reports.

[474]  Junjie Yu,et al.  Clostridium butyricum attenuates cerebral ischemia/reperfusion injury in diabetic mice via modulation of gut microbiota , 2016, Brain Research.

[475]  E. Mayer,et al.  The brain-gut axis in abdominal pain syndromes. , 2011, Annual review of medicine.

[476]  Tetyana Rocks,et al.  The gut microbiome in anorexia nervosa: relevance for nutritional rehabilitation , 2019, Psychopharmacology.

[477]  F. Bushman,et al.  Human and rat gut microbiome composition is maintained following sleep restriction , 2017, Proceedings of the National Academy of Sciences.

[478]  G. Gibson,et al.  Clinical trial: the effects of a trans‐galactooligosaccharide prebiotic on faecal microbiota and symptoms in irritable bowel syndrome , 2009, Alimentary pharmacology & therapeutics.

[479]  E. Campbell,et al.  Microbiota-Derived Indole Metabolites Promote Human and Murine Intestinal Homeostasis through Regulation of Interleukin-10 Receptor. , 2018, The American journal of pathology.

[480]  R. Richardson,et al.  The effects of a probiotic formulation (Lactobacillus rhamnosus and L. helveticus) on developmental trajectories of emotional learning in stressed infant rats , 2016, Translational Psychiatry.

[481]  H. Takanaga,et al.  Participation of a proton-cotransporter, MCT1, in the intestinal transport of monocarboxylic acids. , 1995, Biochemical and biophysical research communications.

[482]  Young-Chul Chung,et al.  Fermented milk of Lactobacillus helveticus IDCC3801 improves cognitive functioning during cognitive fatigue tests in healthy older adults , 2014 .

[483]  Gabriel Núñez,et al.  Control of pathogens and pathobionts by the gut microbiota , 2013, Nature Immunology.

[484]  J. Walter,et al.  A critical assessment of the “sterile womb” and “in utero colonization” hypotheses: implications for research on the pioneer infant microbiome , 2017, Microbiome.

[485]  M. Kamm,et al.  Once daily high dose probiotic therapy (VSL#3) for maintaining remission in recurrent or refractory pouchitis , 2003, Gut.

[486]  Hanns-Ulrich Marschall,et al.  Intestinal Crosstalk between Bile Acids and Microbiota and Its Impact on Host Metabolism. , 2016, Cell metabolism.

[487]  P. Bork,et al.  Intestinal microbiome is related to lifetime antibiotic use in Finnish pre-school children , 2016, Nature Communications.

[488]  C. Franceschi,et al.  Inflamm‐aging: An Evolutionary Perspective on Immunosenescence , 2000 .

[489]  R. Curi,et al.  Tributyrin attenuates obesity-associated inflammation and insulin resistance in high-fat-fed mice. , 2012, American journal of physiology. Endocrinology and metabolism.

[490]  Nathan Chandler,et al.  Corticotropin-Releasing Hormone and Brain Mast Cells Regulate Blood-Brain-Barrier Permeability Induced by Acute Stress , 2002, Journal of Pharmacology and Experimental Therapeutics.

[491]  E. Horváth-Puhó,et al.  Vagotomy and subsequent risk of Parkinson's disease , 2015, Annals of neurology.

[492]  Shiraz A. Shah,et al.  Meta-analysis of human genome-microbiome association studies: the MiBioGen consortium initiative , 2018, Microbiome.

[493]  J. Barros-Velázquez,et al.  Histamine and biogenic amine production by Morganella morganii isolated from temperature-abused albacore. , 2000, Journal of food protection.

[494]  Kirk W. Johnson,et al.  The role of calcitonin gene–related peptide in peripheral and central pain mechanisms including migraine , 2017, Pain.

[495]  M. Salami,et al.  Effect of Probiotic Supplementation on Cognitive Function and Metabolic Status in Alzheimer's Disease: A Randomized, Double-Blind and Controlled Trial , 2016, Front. Aging Neurosci..

[496]  D. Jonkers,et al.  Review article: the role of butyrate on colonic function , 2007, Alimentary pharmacology & therapeutics.

[497]  J. Sun,et al.  Clostridium butyricum exerts a neuroprotective effect in a mouse model of traumatic brain injury via the gut‐brain axis , 2018, Neurogastroenterology and motility : the official journal of the European Gastrointestinal Motility Society.

[498]  K. Berer,et al.  Commensal microbiota and myelin autoantigen cooperate to trigger autoimmune demyelination , 2011, Nature.

[499]  Luis Pedro Coelho,et al.  Functional implications of microbial and viral gut metagenome changes in early stage L-DOPA-naïve Parkinson’s disease patients , 2017, Genome Medicine.

[500]  F. Guarino,et al.  Antibiotic resistance spread potential in urban wastewater effluents disinfected by UV/H2O2 process. , 2016, The Science of the total environment.

[501]  M. Rao,et al.  The Yin and Yang of bile acid action on tight junctions in a model colonic epithelium , 2017, Physiological reports.

[502]  G. Boylan,et al.  Lost in translation? The potential psychobiotic Lactobacillus rhamnosus (JB-1) fails to modulate stress or cognitive performance in healthy male subjects , 2017, Brain, Behavior, and Immunity.

[503]  John B. Furness,et al.  The enteric nervous system and neurogastroenterology , 2012, Nature Reviews Gastroenterology &Hepatology.

[504]  G. FitzGerald,et al.  Timing the Microbes: The Circadian Rhythm of the Gut Microbiome , 2017, Journal of biological rhythms.

[505]  H. Tilg,et al.  European consensus conference on faecal microbiota transplantation in clinical practice , 2017, Gut.

[506]  Jeffrey H. Kordower,et al.  Increased Intestinal Permeability Correlates with Sigmoid Mucosa alpha-Synuclein Staining and Endotoxin Exposure Markers in Early Parkinson's Disease , 2011, PloS one.

[507]  K. Ohno,et al.  Intestinal Dysbiosis and Lowered Serum Lipopolysaccharide-Binding Protein in Parkinson’s Disease , 2015, PloS one.

[508]  Sung Jin Park,et al.  Impaired intestinal afferent nerve satiety signalling and vagal afferent excitability in diet induced obesity in the mouse , 2011, The Journal of physiology.

[509]  I. Nissim,et al.  Ketosis and brain handling of glutamate, glutamine, and GABA , 2008, Epilepsia.

[510]  P. Hawkins,et al.  SCFAs Induce Mouse Neutrophil Chemotaxis through the GPR43 Receptor , 2011, PloS one.

[511]  Ian R. Holzman,et al.  Butyrate enhances the intestinal barrier by facilitating tight junction assembly via activation of AMP-activated protein kinase in Caco-2 cell monolayers. , 2009, The Journal of nutrition.

[512]  T. Hensch Critical period plasticity in local cortical circuits , 2005, Nature Reviews Neuroscience.

[513]  T. Hökfelt,et al.  Autoantibodies against alpha -MSH, ACTH, and LHRH in anorexia and bulimia nervosa patients. , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[514]  Heping Zhang,et al.  Probiotic Lactobacillus plantarum P8 alleviated stress and anxiety while enhancing memory and cognition in stressed adults: A randomised, double-blind, placebo-controlled study. , 2019, Clinical nutrition.

[515]  S. Mazmanian,et al.  The gut microbiota shapes intestinal immune responses during health and disease , 2009, Nature Reviews Immunology.

[516]  E. Mayer,et al.  Principles and clinical implications of the brain–gut–enteric microbiota axis , 2009, Nature Reviews Gastroenterology &Hepatology.

[517]  E. Waubant,et al.  Gut microbiome and pediatric multiple sclerosis , 2018, Multiple sclerosis.

[518]  C. Knauf,et al.  How gut microbes talk to organs: The role of endocrine and nervous routes , 2016, Molecular metabolism.

[519]  Noam E. Ziv,et al.  Synaptic Tenacity or Lack Thereof: Spontaneous Remodeling of Synapses , 2017, Trends in Neurosciences.

[520]  C. Adler,et al.  Does Parkinson’s disease start in the gut? , 2017, Acta Neuropathologica.

[521]  S. Karaki,et al.  Expression of the short-chain fatty acid receptor, GPR43, in the human colon , 2008, Journal of Molecular Histology.

[522]  Jaeyun Sung,et al.  Metabolic modeling with Big Data and the gut microbiome , 2016, Applied & translational genomics.

[523]  P. Xie,et al.  Microbiota Modulate Anxiety-Like Behavior and Endocrine Abnormalities in Hypothalamic-Pituitary-Adrenal Axis , 2017, Front. Cell. Infect. Microbiol..

[524]  J. Versalovic,et al.  Postnatal colonization with human "infant-type" Bifidobacterium species alters behavior of adult gnotobiotic mice , 2018, PloS one.

[525]  Peer Bork,et al.  Extensive impact of non-antibiotic drugs on human gut bacteria , 2018, Nature.

[526]  D. Galimberti,et al.  The leukocyte expression of CD36 is low in patients with Alzheimer's disease and mild cognitive impairment , 2007, Neurobiology of Aging.

[527]  S. Amor,et al.  Innate and adaptive immune responses in neurodegeneration and repair , 2014, Immunology.

[528]  T. Dinan,et al.  Social interaction-induced activation of RNA splicing in the amygdala of microbiome-deficient mice , 2018, eLife.

[529]  M. Gershon,et al.  Physiological Modulation of Intestinal Motility by Enteric Dopaminergic Neurons and the D2 Receptor: Analysis of Dopamine Receptor Expression, Location, Development, and Function in Wild-Type and Knock-Out Mice , 2006, The Journal of Neuroscience.

[530]  Pingchang Yang,et al.  Altered gut microbiota and short chain fatty acids in Chinese children with autism spectrum disorder , 2019, Scientific Reports.

[531]  D. Haller,et al.  Balancing inflammatory, lipid, and xenobiotic signaling pathways by VSL#3, a biotherapeutic agent, in the treatment of inflammatory bowel disease , 2009, Inflammatory bowel diseases.

[532]  L. Janssen,et al.  The TRPV1 channel in rodents is a major target for antinociceptive effect of the probiotic Lactobacillus reuteri DSM 17938 , 2015, The Journal of physiology.

[533]  P. Pelosi,et al.  Erratum to: Immunomodulation after ischemic stroke: potential mechanisms and implications for therapy , 2017, Critical Care.

[534]  John F. Cryan,et al.  Stress & the gut-brain axis: Regulation by the microbiome , 2017, Neurobiology of Stress.

[535]  M. Gassull,et al.  Oral bile acids reduce bacterial overgrowth, bacterial translocation, and endotoxemia in cirrhotic rats , 2003, Hepatology.

[536]  J. Bienenstock,et al.  Bacteroides fragilis polysaccharide A is necessary and sufficient for acute activation of intestinal sensory neurons , 2013, Nature Communications.

[537]  F. Bäckhed,et al.  Gut microbiota regulates maturation of the adult enteric nervous system via enteric serotonin networks , 2018, Proceedings of the National Academy of Sciences.

[538]  S. Fetissov Role of the gut microbiota in host appetite control: bacterial growth to animal feeding behaviour , 2017, Nature Reviews Endocrinology.

[539]  J. Harro,et al.  Bacterial ClpB heat-shock protein, an antigen-mimetic of the anorexigenic peptide α-MSH, at the origin of eating disorders , 2014, Translational Psychiatry.

[540]  H. Kettenmann,et al.  Neurotransmitter receptors on microglia , 2007, Trends in Neurosciences.

[541]  S. Turroni,et al.  Microbiota-Host Transgenomic Metabolism, Bioactive Molecules from the Inside. , 2018, Journal of medicinal chemistry.

[542]  C. Sánchez,et al.  Reversal of age-associated cognitive deficits is accompanied by increased plasticity-related gene expression after chronic antidepressant administration in middle-aged mice , 2015, Pharmacology Biochemistry and Behavior.

[543]  K. Zimmermann,et al.  Weight gain in anorexia nervosa does not ameliorate the faecal microbiota, branched chain fatty acid profiles, and gastrointestinal complaints , 2016, Scientific Reports.

[544]  K. Chopra,et al.  Pathobiological targets of depression , 2011, Expert opinion on therapeutic targets.

[545]  Ian B. Jeffery,et al.  The microbiota link to irritable bowel syndrome , 2012, Gut microbes.

[546]  M. Herkenham,et al.  Lymphocytes from Chronically Stressed Mice Confer Antidepressant-Like Effects to Naive Mice , 2015, The Journal of Neuroscience.

[547]  B. Chassaing,et al.  Acute and repeated exposure to social stress reduces gut microbiota diversity in Syrian hamsters , 2018, Behavioural Brain Research.

[548]  Peter D. Drummond,et al.  Obesity and psychiatric disorders: Commonalities in dysregulated biological pathways and their implications for treatment , 2013, Progress in Neuro-Psychopharmacology and Biological Psychiatry.

[549]  John F. Cryan,et al.  Adult microbiota‐deficient mice have distinct dendritic morphological changes: differential effects in the amygdala and hippocampus , 2016, The European journal of neuroscience.

[550]  P. Clavenzani,et al.  The Olfactory Receptor OR51E1 Is Present along the Gastrointestinal Tract of Pigs, Co-Localizes with Enteroendocrine Cells and Is Modulated by Intestinal Microbiota , 2015, PloS one.

[551]  N. Ajami,et al.  Investigating Colonization of the Healthy Adult Gastrointestinal Tract by Fungi , 2018, mSphere.

[552]  Tae-Hwan Jung,et al.  Butyrate modulates bacterial adherence on LS174T human colorectal cells by stimulating mucin secretion and MAPK signaling pathway , 2015, Nutrition research and practice.

[553]  F. Cattaruzza,et al.  The receptor TGR5 mediates the prokinetic actions of intestinal bile acids and is required for normal defecation in mice. , 2013, Gastroenterology.

[554]  Diminished circadian rhythm of locomotor activity after vagotomy in rats. , 1981, The Japanese journal of physiology.

[555]  E. Wehrwein,et al.  Overview of the Anatomy, Physiology, and Pharmacology of the Autonomic Nervous System. , 2016, Comprehensive Physiology.

[556]  S. Shibata,et al.  Gut Microbiota-Derived Short Chain Fatty Acids Induce Circadian Clock Entrainment in Mouse Peripheral Tissue , 2018, Scientific Reports.

[557]  Yuanxiang Jin,et al.  Subchronic Exposure of Mice to Cadmium Perturbs Their Hepatic Energy Metabolism and Gut Microbiome. , 2015, Chemical research in toxicology.

[558]  How genes and environmental factors determine the different neurodevelopmental trajectories of schizophrenia and bipolar disorder. , 2012, Schizophrenia bulletin.

[559]  Y. Nomura,et al.  Electrical stimulation of afferent vagus nerve induces IL-1beta expression in the brain and activates HPA axis. , 2000, American journal of physiology. Regulatory, integrative and comparative physiology.

[560]  J. Tack,et al.  New treatments and therapeutic targets for IBS and other functional bowel disorders , 2018, Nature Reviews Gastroenterology & Hepatology.

[561]  C. Dejong,et al.  The Role of Microbial Amino Acid Metabolism in Host Metabolism , 2015, Nutrients.

[562]  J. Kaunitz,et al.  Free fatty acid receptor 3 activation suppresses neurogenic motility in rat proximal colon , 2018, Neurogastroenterology and motility : the official journal of the European Gastrointestinal Motility Society.

[563]  C. Nichols,et al.  Human Disease Models in Drosophila melanogaster and the Role of the Fly in Therapeutic Drug Discovery , 2011, Pharmacological Reviews.

[564]  T. Spector,et al.  Socioeconomic Status and the Gut Microbiome: A TwinsUK Cohort Study , 2019, Microorganisms.

[565]  G. Sharon,et al.  The hologenome theory of evolution contains Lamarckian aspects within a Darwinian framework. , 2009, Environmental microbiology.

[566]  Leslie D. Knecht,et al.  Serotonin Activates Bacterial Quorum Sensing and Enhances the Virulence of Pseudomonas aeruginosa in the Host , 2016, EBioMedicine.

[567]  H. Berthoud,et al.  Modulation of taste responsiveness and food preference by obesity and weight loss , 2012, Physiology & Behavior.

[568]  John Aitchison,et al.  The Statistical Analysis of Compositional Data , 1986 .

[569]  H. Jang,et al.  Association of dietary patterns with the fecal microbiota in Korean adolescents , 2017, BMC Nutrition.

[570]  M. Surette,et al.  Microbiota and host determinants of behavioural phenotype in maternally separated mice , 2015, Nature Communications.

[571]  J. Rucklidge,et al.  Systematic review of evidence to support the theory of psychobiotics. , 2015, Nutrition reviews.

[572]  P. Ritvo,et al.  Probiotic supplementation can positively affect anxiety and depressive symptoms: a systematic review of randomized controlled trials. , 2016, Nutrition research.

[573]  N. Talley,et al.  The mucosal immune system: master regulator of bidirectional gut–brain communications , 2017, Nature Reviews Gastroenterology &Hepatology.

[574]  G. Holtrop,et al.  Effect of inulin on the human gut microbiota: stimulation of Bifidobacterium adolescentis and Faecalibacterium prausnitzii , 2008, British Journal of Nutrition.

[575]  C. Carroll,et al.  Accumulation of α-synuclein in the bowel of patients in the pre-clinical phase of Parkinson’s disease , 2014, Acta Neuropathologica.

[576]  R. Nicoll A Brief History of Long-Term Potentiation , 2017, Neuron.

[577]  E. Zoetendal,et al.  Findings From a Randomized Controlled Trial of Fecal Transplantation for Patients With Ulcerative Colitis. , 2015, Gastroenterology.

[578]  S. Copray,et al.  Plasticity and Neural Stem Cells in the Enteric Nervous System , 2009, Anatomical record.

[579]  Colin Hill,et al.  Functional and comparative metagenomic analysis of bile salt hydrolase activity in the human gut microbiome , 2008, Proceedings of the National Academy of Sciences.

[580]  R. Tanzi,et al.  Amyloid-β peptide protects against microbial infection in mouse and worm models of Alzheimer’s disease , 2016, Science Translational Medicine.

[581]  J. Delgado-García,et al.  Oral supplementation of 2'-fucosyllactose during lactation improves memory and learning in rats. , 2016, The Journal of nutritional biochemistry.

[582]  Itai Sharon,et al.  Post-Antibiotic Gut Mucosal Microbiome Reconstitution Is Impaired by Probiotics and Improved by Autologous FMT , 2018, Cell.

[583]  Markku Varjosalo,et al.  Probiotic supplementation restores normal microbiota composition and function in antibiotic-treated and in caesarean-born infants , 2018, Microbiome.

[584]  T. Shen,et al.  Co-expression patterns of the neuropeptides vasoactive intestinal peptide and cholecystokinin with the transduction molecules α-gustducin and T1R2 in rat taste receptor cells , 2005, Neuroscience.

[585]  T. Dinan,et al.  The Role of the Gastrointestinal Microbiota in Visceral Pain. , 2017, Handbook of experimental pharmacology.

[586]  F. Fischmeister,et al.  Influence of 4-week multi-strain probiotic administration on resting-state functional connectivity in healthy volunteers , 2018, European Journal of Nutrition.

[587]  K. Nagai,et al.  Effects of intraduodenal injection of Lactobacillus johnsonii La1 on renal sympathetic nerve activity and blood pressure in urethane-anesthetized rats , 2005, Neuroscience Letters.

[588]  R. Brummer,et al.  ADHD-originating in the gut? The emergence of a new explanatory model. , 2018, Medical hypotheses.

[589]  Junjie Yu,et al.  Clostridium butyricum pretreatment attenuates cerebral ischemia/reperfusion injury in mice via anti-oxidation and anti-apoptosis , 2016, Neuroscience Letters.

[590]  Sur Herrera Paredes,et al.  The Antipsychotic Olanzapine Interacts with the Gut Microbiome to Cause Weight Gain in Mouse , 2014, PloS one.

[591]  J. Konturek,et al.  Brain-gut axis and its role in the control of food intake. , 2004, Journal of physiology and pharmacology : an official journal of the Polish Physiological Society.

[592]  P. Brandtzaeg,et al.  Microbial colonization influences composition and T‐cell receptor Vβ repertoire of intraepithelial lymphocytes in rat intestine , 1996, Immunology.

[593]  N. Basso,et al.  Insulin Resistance, Microbiota, and Fat Distribution Changes by a New Model of Vertical Sleeve Gastrectomy in Obese Rats , 2016, Diabetes.

[594]  S. Mazmanian,et al.  The Enteric Network: Interactions between the Immune and Nervous Systems of the Gut. , 2017, Immunity.

[595]  A. Hartman,et al.  The ketogenic diet: Uses in epilepsy and other neurologic illnesses , 2008, Current treatment options in neurology.

[596]  M. Gotteland,et al.  Anxiogenic effects of a Lactobacillus, inulin and the synbiotic on healthy juvenile rats , 2017, Neuroscience.

[597]  P. Cotter,et al.  Beneficial modulation of the gut microbiota , 2014, FEBS letters.

[598]  M. Lyte,et al.  Anxiogenic effect of subclinical bacterial infection in mice in the absence of overt immune activation , 1998, Physiology & Behavior.

[599]  J. Muñoz-Bellido,et al.  Antimicrobial activity of psychotropic drugs: selective serotonin reuptake inhibitors. , 2000, International journal of antimicrobial agents.

[600]  H. Anisman,et al.  Implications of the gut microbiota in vulnerability to the social avoidance effects of chronic social defeat in male mice , 2017, Brain, Behavior, and Immunity.

[601]  L. Saha Irritable bowel syndrome: pathogenesis, diagnosis, treatment, and evidence-based medicine. , 2014, World journal of gastroenterology.

[602]  S. Dowd,et al.  Exposure to a social stressor alters the structure of the intestinal microbiota: Implications for stressor-induced immunomodulation , 2011, Brain, Behavior, and Immunity.

[603]  P. Hylemon,et al.  Linkage of gut microbiome with cognition in hepatic encephalopathy. , 2012, American journal of physiology. Gastrointestinal and liver physiology.

[604]  M. Ota,et al.  Possible association of Bifidobacterium and Lactobacillus in the gut microbiota of patients with major depressive disorder. , 2016, Journal of affective disorders.

[605]  Ryan M. O’Connell,et al.  Expansion of Bacteriophages Is Linked to Aggravated Intestinal Inflammation and Colitis. , 2019, Cell host & microbe.

[606]  B. Göke,et al.  Fäkaler Mikrobiom-Transfer bei therapierefraktärem Diarrhoe-betontem Reizdarmsyndrom , 2015, DMW Deutsche Medizinische Wochenschrift.

[607]  M. Valko,et al.  Free radicals, metals and antioxidants in oxidative stress-induced cancer. , 2006, Chemico-biological interactions.

[608]  Stuart M. Brown,et al.  Bioinformatics in Microbiome Analysis , 2017 .

[609]  L. Tarantino,et al.  Gut feelings: A role for the intestinal microbiota in anorexia nervosa? , 2015, The International journal of eating disorders.

[610]  T. Dinan,et al.  Intervention strategies for cesarean section–induced alterations in the microbiota-gut-brain axis , 2017, Nutrition reviews.

[611]  John F. Cryan,et al.  Brain–Gut–Microbe Communication in Health and Disease , 2011, Front. Physio..

[612]  Jimmy D Bell,et al.  Effects of targeted delivery of propionate to the human colon on appetite regulation, body weight maintenance and adiposity in overweight adults , 2014, Gut.

[613]  P. Freestone,et al.  Pseudomonas aeruginosa-catecholamine inotrope interactions: a contributory factor in the development of ventilator-associated pneumonia? , 2012, Chest.

[614]  J. Auwerx,et al.  TGR5-mediated bile acid sensing controls glucose homeostasis. , 2009, Cell metabolism.

[615]  D. Sinderen,et al.  Gut microbiota composition correlates with diet and health in the elderly , 2012, Nature.

[616]  S. Elsden,et al.  Volatile acid production from threonine, valine, leucine and isoleucine by clostridia , 1978, Archives of Microbiology.

[617]  J. Bae,et al.  Diversity and Abundance of Single-Stranded DNA Viruses in Human Feces , 2011, Applied and Environmental Microbiology.

[618]  Tuan Leng Tay,et al.  Microglia across the lifespan: from origin to function in brain development, plasticity and cognition , 2017, The Journal of physiology.

[619]  A. Simmons,et al.  Developmental and Regional Patterns of GAP-43 Immunoreactivity in a Metamorphosing Brain , 2008, Brain, Behavior and Evolution.

[620]  G. D’Antona,et al.  Branched-chain amino acid supplementation promotes survival and supports cardiac and skeletal muscle mitochondrial biogenesis in middle-aged mice. , 2010, Cell metabolism.

[621]  F. Bushman,et al.  Histone deacetylase 3 coordinates commensal-bacteria-dependent intestinal homeostasis , 2013, Nature.

[622]  E. van Nood,et al.  Complications, effectiveness, and long term follow-up of fecal microbiota transfer by nasoduodenal tube for treatment of recurrent Clostridium difficile infection , 2017, United European gastroenterology journal.

[623]  B. Le Foll,et al.  Prevention of Diet-Induced Obesity Effects on Body Weight and Gut Microbiota in Mice Treated Chronically with Δ9-Tetrahydrocannabinol , 2015, PloS one.

[624]  D. Magne,et al.  Inflammaging: the driving force in osteoporosis? , 2011, Medical hypotheses.

[625]  David B. Allison,et al.  Impact of caloric restriction on health and survival in rhesus monkeys from the NIA study , 2012, Nature.

[626]  N. Spencer,et al.  Regional differences in nutrient‐induced secretion of gut serotonin , 2017, Physiological reports.

[627]  A. Jačan,et al.  Visceral Inflammation and Immune Activation Stress the Brain , 2017, Front. Immunol..

[628]  K. Bittinger,et al.  The gut microbiome regulates the increases in depressive-type behaviors and in inflammatory processes in the ventral hippocampus of stress vulnerable rats , 2019, Molecular Psychiatry.

[629]  R. Knight,et al.  Dietary Prebiotics and Bioactive Milk Fractions Improve NREM Sleep, Enhance REM Sleep Rebound and Attenuate the Stress-Induced Decrease in Diurnal Temperature and Gut Microbial Alpha Diversity , 2017, Front. Behav. Neurosci..

[630]  R. Medzhitov Recognition of microorganisms and activation of the immune response , 2007, Nature.

[631]  Hee-Sun Kim,et al.  Anti-inflammatory effects of short chain fatty acids in IFN-gamma-stimulated RAW 264.7 murine macrophage cells: involvement of NF-kappaB and ERK signaling pathways. , 2007, International immunopharmacology.

[632]  J. Holst,et al.  The melanocortin-4 receptor is expressed in enteroendocrine L cells and regulates the release of peptide YY and glucagon-like peptide 1 in vivo. , 2014, Cell metabolism.

[633]  J. Cryan,et al.  Microbial genes, brain & behaviour – epigenetic regulation of the gut–brain axis , 2014, Genes, brain, and behavior.

[634]  J. Wood Enteric Nervous System: Neuropathic Gastrointestinal Motility , 2016, Digestive Diseases and Sciences.

[635]  J. Chayvialle,et al.  Mucin secretion is modulated by luminal factors in the isolated vascularly perfused rat colon , 2000, Gut.

[636]  Anders F. Andersson,et al.  Short-Term Antibiotic Treatment Has Differing Long-Term Impacts on the Human Throat and Gut Microbiome , 2010, PloS one.

[637]  Kelly V. Ruggles,et al.  Bacteriophages as potential new mammalian pathogens , 2017, Scientific Reports.

[638]  Greg J. Stanisz,et al.  Magnetic resonance spectroscopy reveals oral Lactobacillus promotion of increases in brain GABA, N-acetyl aspartate and glutamate , 2016, NeuroImage.

[639]  C. Coe,et al.  Prenatal Stress Alters Bacterial Colonization of the Gut in Infant Monkeys , 2004, Journal of pediatric gastroenterology and nutrition.

[640]  J. Bertrand,et al.  Quantification and Potential Functions of Endogenous Agonists of Transient Receptor Potential Channels in Patients With Irritable Bowel Syndrome. , 2015, Gastroenterology.

[641]  Harriët Schellekens,et al.  Feeding the microbiota‐gut‐brain axis: diet, microbiome, and neuropsychiatry , 2017, Translational research : the journal of laboratory and clinical medicine.

[642]  G. Dantas,et al.  Diet and Maternal Gestational Weight Gain Predict Metabolic Maturation of Infant Gut Microbiomes , 2018, Nature Medicine.

[643]  L. Desbonnet,et al.  Effects of the probiotic Bifidobacterium infantis in the maternal separation model of depression , 2010, Neuroscience.

[644]  J. Cryan,et al.  The microbiome‐gut‐brain axis: from bowel to behavior , 2011, Neurogastroenterology and motility : the official journal of the European Gastrointestinal Motility Society.

[645]  J. Allaire,et al.  The Intestinal Epithelium: Central Coordinator of Mucosal Immunity. , 2018, Trends in immunology.

[646]  Peer Bork,et al.  Metabolic dependencies drive species co-occurrence in diverse microbial communities , 2015, Proceedings of the National Academy of Sciences.

[647]  R. Richardson,et al.  Treating Generational Stress , 2016, Psychological science.

[648]  A. Farmer,et al.  Mechanisms and management of functional abdominal pain , 2014, Journal of the Royal Society of Medicine.

[649]  C. Picq,et al.  Chronic vagus nerve stimulation in Crohn's disease: a 6‐month follow‐up pilot study , 2016, Neurogastroenterology and motility : the official journal of the European Gastrointestinal Motility Society.

[650]  A. Hannan,et al.  Genetic and environmental factors in the pathogenesis of Huntington’s disease , 2004, Neurogenetics.

[651]  F. Shanahan,et al.  The gut flora as a forgotten organ , 2006, EMBO reports.

[652]  D. Court,et al.  Host responses influence on the induction of lambda prophage , 2008, Molecular microbiology.

[653]  R. Kedzierski,et al.  Short-chain fatty acids stimulate leptin production in adipocytes through the G protein-coupled receptor GPR41. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[654]  J. Petrosino,et al.  The Placenta Harbors a Unique Microbiome , 2014, Science Translational Medicine.

[655]  T. Dinan,et al.  Thinking small: towards microRNA-based therapeutics for anxiety disorders , 2015, Expert opinion on investigational drugs.

[656]  T. Dinan,et al.  Behavioural and neurochemical consequences of chronic gut microbiota depletion during adulthood in the rat , 2016, Neuroscience.

[657]  D. J. Doty,et al.  Variations in diet cause alterations in microbiota and metabolites that follow changes in disease severity in a multiple sclerosis model. , 2018, Beneficial microbes.

[658]  Pavel M Itskov,et al.  Commensal bacteria and essential amino acids control food choice behavior and reproduction , 2017, PLoS biology.

[659]  E. Mayer,et al.  Gut/brain axis and the microbiota. , 2015, The Journal of clinical investigation.

[660]  S. Salminen,et al.  Human gut colonisation may be initiated in utero by distinct microbial communities in the placenta and amniotic fluid , 2016, Scientific Reports.

[661]  Amalio Telenti,et al.  The fecal metabolome as a functional readout of the gut microbiome , 2018, Nature Genetics.

[662]  H. Thierfelder,et al.  Thierisches Leben ohne Bakterien im Verdauungskanal. (II. Mittheilung). , 1897 .

[663]  F. Gonzalez,et al.  Intestine farnesoid X receptor agonist and the gut microbiota activate G‐protein bile acid receptor‐1 signaling to improve metabolism , 2018, Hepatology.

[664]  H. Forssberg,et al.  Host microbiota modulates development of social preference in mice , 2015, Microbial ecology in health and disease.

[665]  V. Burley,et al.  Dietary fibre in Europe: current state of knowledge on definitions, sources, recommendations, intakes and relationships to health , 2017, Nutrition Research Reviews.

[666]  K. Roelofs,et al.  Stress matters: Randomized controlled trial on the effect of probiotics on neurocognition , 2018, Neurobiology of Stress.

[667]  J. Woods,et al.  Butyrate and Dietary Soluble Fiber Improve Neuroinflammation Associated With Aging in Mice , 2018, Front. Immunol..

[668]  K. Kristiansen,et al.  Efficacy and safety of faecal microbiota transplantation in patients with psoriatic arthritis: protocol for a 6-month, double-blind, randomised, placebo-controlled trial , 2018, BMJ Open.

[669]  Linda Partridge,et al.  Extending Healthy Life Span—From Yeast to Humans , 2010, Science.

[670]  R. Osawa,et al.  Age-related changes in gut microbiota composition from newborn to centenarian: a cross-sectional study , 2016, BMC Microbiology.

[671]  R. Tanzi,et al.  Antibiotic-induced perturbations in microbial diversity during post-natal development alters amyloid pathology in an aged APPSWE/PS1ΔE9 murine model of Alzheimer’s disease , 2017, Scientific Reports.

[672]  J. Bae,et al.  Lysogeny is prevalent and widely distributed in the murine gut microbiota , 2018, The ISME Journal.

[673]  T. Treangen,et al.  Traumatic Brain Injury in Mice Induces Acute Bacterial Dysbiosis Within the Fecal Microbiome , 2018, Front. Immunol..

[674]  W. Kern,et al.  Efflux inhibition by selective serotonin reuptake inhibitors in Escherichia coli. , 2011, The Journal of antimicrobial chemotherapy.

[675]  C. Darimont,et al.  Effects of a Diet-Based Weight-Reducing Program with Probiotic Supplementation on Satiety Efficiency, Eating Behaviour Traits, and Psychosocial Behaviours in Obese Individuals , 2017, Nutrients.

[676]  Yan Wang,et al.  Sensitive and Simplified Detection of Antibiotic Influence on the Dynamic and Versatile Changes of Fecal Short-Chain Fatty Acids , 2016, PloS one.

[677]  H. Weiner,et al.  Differential roles of microglia and monocytes in the inflamed central nervous system , 2014, The Journal of experimental medicine.

[678]  Anders F. Andersson,et al.  Low Gut Microbiota Diversity in Early Infancy Precedes Asthma at School Age , 2015, Pediatrics.

[679]  R. Knight,et al.  The Effect of Diet on the Human Gut Microbiome: A Metagenomic Analysis in Humanized Gnotobiotic Mice , 2009, Science Translational Medicine.

[680]  G. Koob The dark side of emotion: the addiction perspective , 2015, European journal of pharmacology.

[681]  Y. Taché,et al.  Central injection of a new corticotropin-releasing factor (CRF) antagonist, astressin, blocks CRF- and stress-related alterations of gastric and colonic motor function. , 1997, The Journal of pharmacology and experimental therapeutics.

[682]  G. Chrousos,et al.  The sympathetic nerve--an integrative interface between two supersystems: the brain and the immune system. , 2000, Pharmacological reviews.

[683]  T. Iwanaga,et al.  Short-chain fatty acid receptor, GPR43, is expressed by enteroendocrine cells and mucosal mast cells in rat intestine , 2006, Cell and Tissue Research.

[684]  W. D. de Vos,et al.  The gut microbiota in internal medicine: implications for health and disease. , 2015, The Netherlands journal of medicine.

[685]  Anne L McCartney,et al.  Differences between the gut microflora of children with autistic spectrum disorders and that of healthy children. , 2005, Journal of medical microbiology.

[686]  F. A. Schroeder,et al.  Antidepressant-Like Effects of the Histone Deacetylase Inhibitor, Sodium Butyrate, in the Mouse , 2007, Biological Psychiatry.

[687]  Jonathon Rees Obsessive-compulsive disorder and gut microbiota dysregulation. , 2014, Medical hypotheses.

[688]  F. Casanueva,et al.  Gut Microbiota Composition in Male Rat Models under Different Nutritional Status and Physical Activity and Its Association with Serum Leptin and Ghrelin Levels , 2013, PloS one.

[689]  Wei Liu,et al.  Metabolic shifts and structural changes in the gut microbiota upon branched-chain amino acid supplementation in middle-aged mice , 2016, Amino Acids.

[690]  E. Robilotti,et al.  Reconstitution of the gut microbiota of antibiotic-treated patients by autologous fecal microbiota transplant , 2018, Science Translational Medicine.

[691]  Daniel B. DiGiulio,et al.  Development of the Human Infant Intestinal Microbiota , 2007, PLoS biology.

[692]  M. Oldstone Molecular Mimicry, Microbial Infection, and Autoimmune Disease: Evolution of the Concept , 2005, Current topics in microbiology and immunology.

[693]  R. Malenka,et al.  Synaptic Plasticity: Multiple Forms, Functions, and Mechanisms , 2008, Neuropsychopharmacology.

[694]  Mark Lyte,et al.  A microbial endocrinology‐based simulated small intestinal medium for the evaluation of neurochemical production by gut microbiota , 2018, FEMS microbiology ecology.

[695]  G. Cresci,et al.  GPR109A is a G-protein-coupled receptor for the bacterial fermentation product butyrate and functions as a tumor suppressor in colon. , 2009, Cancer research.

[696]  Simon C. Cork,et al.  Identification and Characterization of GLP-1 Receptor–Expressing Cells Using a New Transgenic Mouse Model , 2014, Diabetes.

[697]  Hua V. Lin,et al.  Butyrate and Propionate Protect against Diet-Induced Obesity and Regulate Gut Hormones via Free Fatty Acid Receptor 3-Independent Mechanisms , 2012, PloS one.

[698]  C. Watkins,et al.  Cognitive impairment in patients with AIDS – prevalence and severity , 2015, HIV/AIDS.

[699]  Bing Ruan,et al.  Altered fecal microbiota composition in patients with major depressive disorder , 2015, Brain, Behavior, and Immunity.

[700]  T. Hibi,et al.  Bile acids induce monocyte differentiation toward interleukin‐12 hypo‐producing dendritic cells via a TGR5‐dependent pathway , 2012, Immunology.

[701]  R. Mcfadzean Exercise can help modulate human gut microbiota , 2014 .

[702]  S. Schreiber,et al.  Efficacy of Sterile Fecal Filtrate Transfer for Treating Patients With Clostridium difficile Infection. , 2017, Gastroenterology.

[703]  Rui B Chang,et al.  Sensory Neurons that Detect Stretch and Nutrients in the Digestive System , 2016, Cell.

[704]  I. Drozdov,et al.  IL1β‐ and LPS‐induced serotonin secretion is increased in EC cells derived from Crohn’s disease , 2009, Neurogastroenterology and motility : the official journal of the European Gastrointestinal Motility Society.

[705]  D. Repsilber,et al.  Probiotic administration among free-living older adults: a double blinded, randomized, placebo-controlled clinical trial , 2015, Nutrition Journal.

[706]  D. Raoult,et al.  A comprehensive repertoire of prokaryotic species identified in human beings. , 2015, The Lancet. Infectious diseases.

[707]  L. Joosten,et al.  Suppression of monosodium urate crystal-induced cytokine production by butyrate is mediated by the inhibition of class I histone deacetylases , 2015, Annals of the rheumatic diseases.

[708]  R. Costa de Miranda,et al.  Evidences of a New Psychobiotic Formulation on Body Composition and Anxiety , 2017, Mediators of inflammation.

[709]  E. K. Kemsley,et al.  Ulcerative colitis and irritable bowel patients exhibit distinct abnormalities of the gut microbiota , 2010, BMC gastroenterology.

[710]  C. Epperson,et al.  Childhood adversity impact on gut microbiota and inflammatory response to stress during pregnancy , 2019, Brain, Behavior, and Immunity.

[711]  R. DeSalle,et al.  Large-scale differences in microbial biodiversity discovery between 16S amplicon and shotgun sequencing , 2017, Scientific Reports.

[712]  Sabita Roy,et al.  Morphine induces changes in the gut microbiome and metabolome in a morphine dependence model , 2018, Scientific Reports.

[713]  K. Nishida,et al.  Probiotic Lactobacillus casei strain Shirota relieves stress‐associated symptoms by modulating the gut–brain interaction in human and animal models , 2016, Neurogastroenterology and motility : the official journal of the European Gastrointestinal Motility Society.

[714]  Emma M. Simmerman,et al.  Preimmunization with a heat-killed preparation of Mycobacterium vaccae enhances fear extinction in the fear-potentiated startle paradigm , 2017, Brain, Behavior, and Immunity.

[715]  B. Xiao,et al.  Psychological stress enhances the colonization of the stomach by Helicobacter pylori in the BALB/c mouse , 2009, Stress.

[716]  John F. Cryan,et al.  Ingestion of Lactobacillus strain regulates emotional behavior and central GABA receptor expression in a mouse via the vagus nerve , 2011, Proceedings of the National Academy of Sciences.

[717]  A. Focà,et al.  Gut Inflammation and Immunity: What Is the Role of the Human Gut Virome? , 2015, Mediators of inflammation.

[718]  F. Turek,et al.  Circadian disruption and metabolic disease: findings from animal models. , 2010, Best practice & research. Clinical endocrinology & metabolism.

[719]  M. Furuse,et al.  Commensal microbiota modulate murine behaviors in a strictly contamination‐free environment confirmed by culture‐based methods , 2013, Neurogastroenterology and motility : the official journal of the European Gastrointestinal Motility Society.

[720]  J. Wood Enteric nervous system: reflexes, pattern generators and motility , 2008, Current opinion in gastroenterology.

[721]  R. Knight,et al.  Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns , 2010, Proceedings of the National Academy of Sciences.

[722]  B. Taylor,et al.  The Current Status of the Ketogenic Diet in Psychiatry , 2017, Front. Psychiatry.

[723]  R. Ritter,et al.  High fat maintenance diet attenuates hindbrain neuronal response to CCK , 2000, Regulatory Peptides.

[724]  D. Grundy,et al.  Interplay between mast cells, enterochromaffin cells, and sensory signaling in the aging human bowel , 2016, Neurogastroenterology and motility : the official journal of the European Gastrointestinal Motility Society.

[725]  Nora C. Toussaint,et al.  Intestinal Microbiota Containing Barnesiella Species Cures Vancomycin-Resistant Enterococcus faecium Colonization , 2013, Infection and Immunity.

[726]  K. Kolandaivelu,et al.  Microbial lysate upregulates host oxytocin , 2016, Brain, Behavior, and Immunity.

[727]  T. Hummel,et al.  Gustatory and olfactory sensitivity in patients with anorexia and bulimia in the course of treatment. , 2008, Journal of psychiatric research.

[728]  Stephanie M. Karst The influence of commensal bacteria on infection with enteric viruses , 2016, Nature Reviews Microbiology.

[729]  R. Milev,et al.  The effects of probiotics on depressive symptoms in humans: a systematic review , 2017, Annals of General Psychiatry.

[730]  N. Ajami,et al.  Transmissible microbial and metabolomic remodeling by soluble dietary fiber improves metabolic homeostasis , 2015, Scientific Reports.

[731]  P. Kearney,et al.  Birth by caesarean section and school performance in Swedish adolescents- a population-based study , 2017, BMC Pregnancy and Childbirth.

[732]  J. Harro,et al.  Elevated plasma concentrations of bacterial ClpB protein in patients with eating disorders. , 2016, The International journal of eating disorders.

[733]  Jimmy D Bell,et al.  The short-chain fatty acid acetate reduces appetite via a central homeostatic mechanism , 2014, Nature Communications.

[734]  J. Delcour,et al.  Systemic availability and metabolism of colonic‐derived short‐chain fatty acids in healthy subjects: a stable isotope study , 2017, The Journal of physiology.

[735]  M. Cerdà-Cuéllar,et al.  Antibiotic-induced dysbiosis alters host-bacterial interactions and leads to colonic sensory and motor changes in mice , 2015, Gut microbes.

[736]  Y. Vandenplas,et al.  Prebiotics in infant formula , 2014, Gut microbes.

[737]  D. Antonopoulos,et al.  Exercise Prevents Weight Gain and Alters the Gut Microbiota in a Mouse Model of High Fat Diet-Induced Obesity , 2014, PloS one.

[738]  X. Wu,et al.  Administration of Lactobacillus helveticus NS8 improves behavioral, cognitive, and biochemical aberrations caused by chronic restraint stress , 2015, Neuroscience.

[739]  H. Friess,et al.  Neural plasticity in the gastrointestinal tract: chronic inflammation, neurotrophic signals, and hypersensitivity , 2013, Acta Neuropathologica.

[740]  Jacques Schrenzel,et al.  Responses of Gut Microbiota and Glucose and Lipid Metabolism to Prebiotics in Genetic Obese and Diet-Induced Leptin-Resistant Mice , 2011, Diabetes.

[741]  F. Turroni,et al.  Gut microbiota composition is associated with polypharmacy in elderly hospitalized patients , 2017, Scientific Reports.

[742]  Ed J. Kuijper,et al.  Clostridium difficile infection , 2016, Nature Reviews Disease Primers.

[743]  B. Berg,et al.  Probiotic Lactobacillus rhamnosus GG (LGG) and prebiotic prevent neonatal inflammation‐induced visceral hypersensitivity in adult rats , 2014, Neurogastroenterology and motility : the official journal of the European Gastrointestinal Motility Society.

[744]  P. Edwards,et al.  Pleiotropic roles of bile acids in metabolism. , 2013, Cell metabolism.

[745]  M. Angley,et al.  Elevated Fecal Short Chain Fatty Acid and Ammonia Concentrations in Children with Autism Spectrum Disorder , 2012, Digestive Diseases and Sciences.

[746]  Y. Taché,et al.  Fundamentals of neurogastroenterology: basic science. , 2006, Gastroenterology.

[747]  M. Surette,et al.  Oral treatment with Lactobacillus rhamnosus attenuates behavioural deficits and immune changes in chronic social stress , 2017, BMC Medicine.

[748]  W. Ginoza,et al.  Induction of lambda prophage by nalidixic acid. , 1970, Virology.

[749]  L. Bode,et al.  Association of Maternal Probiotic Supplementation With Human Milk Oligosaccharide Composition , 2019, JAMA pediatrics.

[750]  P. Konturek,et al.  Emerging role of fecal microbiota therapy in the treatment of gastrointestinal and extra-gastrointestinal diseases. , 2015, Journal of physiology and pharmacology : an official journal of the Polish Physiological Society.

[751]  Francisco J. Ayala,et al.  Darwin and the scientific method , 2009, Proceedings of the National Academy of Sciences.

[752]  John F. Cryan,et al.  Maternal separation as a model of brain–gut axis dysfunction , 2011, Psychopharmacology.

[753]  Y. Sanz,et al.  Interplay Between the Gut-Brain Axis, Obesity and Cognitive Function , 2018, Front. Neurosci..

[754]  J. Sonnenburg,et al.  Gut microbes promote colonic serotonin production through an effect of short‐chain fatty acids on enterochromaffin cells , 2015, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[755]  H. Rittner,et al.  Opioids and the immune system – friend or foe , 2018, British journal of pharmacology.

[756]  M. Teixeira,et al.  Commensal microbiota is fundamental for the development of inflammatory pain , 2008, Proceedings of the National Academy of Sciences.

[757]  M. Crowell,et al.  Human gut microbiota in obesity and after gastric bypass , 2009, Proceedings of the National Academy of Sciences.

[758]  Dae-Wook Kang,et al.  Differences in fecal microbial metabolites and microbiota of children with autism spectrum disorders. , 2018, Anaerobe.

[759]  B. El-Khodor,et al.  Birth insult interacts with stress at adulthood to alter dopaminergic function in animal models: possible implications for schizophrenia and other disorders , 2003, Neuroscience & Biobehavioral Reviews.

[760]  S. Krahl,et al.  Vagus nerve stimulation for epilepsy: A review of the peripheral mechanisms , 2012, Surgical neurology international.

[761]  J. Vázquez-Barquero,et al.  Glucose and lipid disturbances after 1 year of antipsychotic treatment in a drug-naïve population , 2009, Schizophrenia Research.

[762]  O. Koren,et al.  Dysbiosis of microbiome and probiotic treatment in a genetic model of autism spectrum disorders , 2018, Brain, Behavior, and Immunity.

[763]  Geir Bjorklund,et al.  Probiotic treatment reduces the autistic-like excitation/inhibition imbalance in juvenile hamsters induced by orally administered propionic acid and clindamycin , 2018, Metabolic Brain Disease.

[764]  A. Briggs,et al.  Effectiveness of probiotics in the management of inflammatory arthritis: a systematic review protocol. , 2018, JBI database of systematic reviews and implementation reports.

[765]  Robyn Blackford,et al.  Gut Microbiota, the Ketogenic Diet and Epilepsy , 2018, Pediatric neurology briefs.

[766]  P. McColgan,et al.  Huntington's disease: a clinical review , 2018, European journal of neurology.

[767]  S. Rampelli,et al.  The gut microbiota of centenarians: Signatures of longevity in the gut microbiota profile , 2017, Mechanisms of Ageing and Development.

[768]  K. Nishida,et al.  Fermented milk containing Lactobacillus casei strain Shirota prevents the onset of physical symptoms in medical students under academic examination stress. , 2016, Beneficial microbes.

[769]  M. Bienkowski,et al.  Common and distinct neural inputs to the medial central nucleus of the amygdala and anterior ventrolateral bed nucleus of stria terminalis in rats , 2012, Brain Structure and Function.

[770]  F. Bäckhed,et al.  The endocannabinoid system links gut microbiota to adipogenesis , 2010, Molecular systems biology.

[771]  Paul Theodor Pyl,et al.  Recovery of gut microbiota of healthy adults following antibiotic exposure , 2018, Nature Microbiology.

[772]  L. Hooper,et al.  Immune responses to the microbiota at the intestinal mucosal surface. , 2009, Immunity.

[773]  N. Mascolo,et al.  Mechanism of short-chain fatty acid uptake by apical membrane vesicles of rat distal colon. , 1991, Gastroenterology.

[774]  K. Honda,et al.  Induction of Colonic Regulatory T Cells by Indigenous Clostridium Species , 2011, Science.

[775]  M. Yudkoff,et al.  Brain metabolism of branched‐chain amino acids , 1997, Glia.

[776]  N. Vergnolle Protease-activated receptors as drug targets in inflammation and pain. , 2009, Pharmacology & therapeutics.

[777]  M. Giera,et al.  Butyrate reduces appetite and activates brown adipose tissue via the gut-brain neural circuit , 2017, Gut.

[778]  L. Birnbaumer,et al.  Chronic stress promotes colitis by disturbing the gut microbiota and triggering immune system response , 2018, Proceedings of the National Academy of Sciences.

[779]  J. Gale Serotonergic Mediation of Vomiting , 1995, Journal of pediatric gastroenterology and nutrition.

[780]  G. Nolan,et al.  A gut bacterial pathway metabolizes aromatic amino acids into nine circulating metabolites , 2017, Nature.

[781]  A. Jačan,et al.  Cognitive impairment by antibiotic-induced gut dysbiosis: Analysis of gut microbiota-brain communication , 2016, Brain, Behavior, and Immunity.

[782]  Hanna Tuomisto,et al.  A diversity of beta diversities: straightening up a concept gone awry. Part 2. Quantifying beta diversity and related phenomena , 2010 .

[783]  A. Hannan,et al.  Microbiome profiling reveals gut dysbiosis in a transgenic mouse model of Huntington's disease , 2020, Neurobiology of Disease.

[784]  S. Montain,et al.  Changes in intestinal microbiota composition and metabolism coincide with increased intestinal permeability in young adults under prolonged physiological stress. , 2017, American journal of physiology. Gastrointestinal and liver physiology.

[785]  Heng Zhou,et al.  Effects of gut microbiota disturbance induced in early life on the expression of extrasynaptic GABA-A receptor α5 and δ subunits in the hippocampus of adult rats , 2017, Brain Research Bulletin.

[786]  T. Brewerton,et al.  CSF isatin is elevated in bulimia nervosa , 1995, Biological Psychiatry.

[787]  V. Young,et al.  Stress-induced corticotropin-releasing hormone-mediated NLRP6 inflammasome inhibition and transmissible enteritis in mice. , 2013, Gastroenterology.

[788]  R. Dilger,et al.  Dietary polydextrose and galactooligosaccharide increase exploratory behavior, improve recognition memory, and alter neurochemistry in the young pig , 2017, Nutritional neuroscience.

[789]  Jun Wang,et al.  Metagenome-wide association studies: fine-mining the microbiome , 2016, Nature Reviews Microbiology.

[790]  W. Liao,et al.  Influence of diet on the gut microbiome and implications for human health , 2017, Journal of Translational Medicine.

[791]  S. Kanaya,et al.  Ketogenic diets and Alzheimer’s disease , 2017 .

[792]  L. Tenori,et al.  Metabolomic fingerprint of severe obesity is dynamically affected by bariatric surgery in a procedure-dependent manner. , 2015, The American journal of clinical nutrition.

[793]  Tran Quoc Bao,et al.  Trends in adult body-mass index in 200 countries from 1975 to 2014: a pooled analysis of 1698 population-based measurement studies with 19·2 million participants , 2016, The Lancet.

[794]  R. Mirsky,et al.  GAP-43 immunoreactivity is widespread in the autonomic neurons and sensory neurons of the rat , 1992, Neuroscience.

[795]  H. Cao,et al.  Total fecal microbiota transplantation alleviates high-fat diet-induced steatohepatitis in mice via beneficial regulation of gut microbiota , 2017, Scientific Reports.

[796]  Patrice D Cani,et al.  Gut microbiota, enteroendocrine functions and metabolism. , 2013, Current opinion in pharmacology.

[797]  M. Pejović-Milovančević,et al.  Sex Differences in Autism Spectrum Disorders: Does Sex Moderate the Pathway from Clinical Symptoms to Adaptive Behavior? , 2015, Scientific Reports.

[798]  E. Pekkonen,et al.  Gut microbiota are related to Parkinson's disease and clinical phenotype , 2015, Movement disorders : official journal of the Movement Disorder Society.

[799]  B. Wostmann,et al.  Histamine and 5-hydroxytryptamine in the intestinal tract of germ-free animals, animals harbouring one microbial species and conventional animals. , 1962, British journal of pharmacology and chemotherapy.

[800]  J. E. Aguilar-Nascimento,et al.  Benefits of early enteral nutrition with glutamine and probiotics in brain injury patients , 2004 .

[801]  J. Kaunitz,et al.  FFA3 Activation Stimulates Duodenal Bicarbonate Secretion and Prevents NSAID-Induced Enteropathy via the GLP-2 Pathway in Rats , 2016, Digestive Diseases and Sciences.

[802]  Jianqiong Zhang,et al.  Role of intestinal microbiota and metabolites on gut homeostasis and human diseases , 2017, BMC Immunology.

[803]  P. Brigidi,et al.  The effect of short-chain fatty acids on human monocyte-derived dendritic cells , 2015, Scientific Reports.

[804]  Johan Auwerx,et al.  Targeting bile-acid signalling for metabolic diseases , 2008, Nature Reviews Drug Discovery.

[805]  A. De Lorenzo,et al.  Can psychobiotics intake modulate psychological profile and body composition of women affected by normal weight obese syndrome and obesity? A double blind randomized clinical trial , 2017, Journal of Translational Medicine.

[806]  I. Wilson,et al.  Gut microorganisms, mammalian metabolism and personalized health care , 2005, Nature Reviews Microbiology.

[807]  Masahiko Watanabe,et al.  Neural FFA3 activation inversely regulates anion secretion evoked by nicotinic ACh receptor activation in rat proximal colon , 2016, The Journal of physiology.

[808]  T. Dinan,et al.  Omega-3 polyunsaturated fatty acids critically regulate behaviour and gut microbiota development in adolescence and adulthood , 2017, Brain, Behavior, and Immunity.

[809]  A. Keshavarzian,et al.  Intestinal dysbiosis: a possible mechanism of alcohol-induced endotoxemia and alcoholic steatohepatitis in rats. , 2009, Alcoholism, clinical and experimental research.

[810]  W. Jackson,et al.  Chronic gastrointestinal inflammation induces anxiety-like behavior and alters central nervous system biochemistry in mice. , 2010, Gastroenterology.

[811]  N. Oezguen,et al.  GABA‐producing Bifidobacterium dentium modulates visceral sensitivity in the intestine , 2016, Neurogastroenterology and motility : the official journal of the European Gastrointestinal Motility Society.

[812]  C. P. Leblond,et al.  Migration and turnover of entero-endocrine and caveolated cells in the epithelium of the descending colon, as shown by radioautography after continuous infusion of 3H-thymidine into mice. , 1979, The American journal of anatomy.

[813]  T. Dinan,et al.  Antipsychotics and the gut microbiome: olanzapine-induced metabolic dysfunction is attenuated by antibiotic administration in the rat , 2013, Translational Psychiatry.

[814]  T. Sarkola,et al.  Ethanol, acetaldehyde, acetate, and lactate levels after alcohol intake in white men and women: effect of 4-methylpyrazole. , 2002, Alcoholism, clinical and experimental research.

[815]  M. Surette,et al.  Fecal Microbiota Transplantation Induces Remission in Patients With Active Ulcerative Colitis in a Randomized Controlled Trial. , 2015, Gastroenterology.

[816]  Bao-miao Ma,et al.  Gut Microbiota Analysis in Rats with Methamphetamine-Induced Conditioned Place Preference , 2017, bioRxiv.

[817]  Andre Franke,et al.  Microbial Exposure During Early Life Has Persistent Effects on Natural Killer T Cell Function , 2012, Science.

[818]  T. Dinan,et al.  Psychobiotics and the Manipulation of Bacteria–Gut–Brain Signals , 2016, Trends in Neurosciences.

[819]  C. Winter,et al.  Abdominal Vagal Afferents Modulate the Brain Transcriptome and Behaviors Relevant to Schizophrenia , 2018, The Journal of Neuroscience.

[820]  K. Svenson,et al.  Diet dominates host genotype in shaping the murine gut microbiota. , 2015, Cell host & microbe.

[821]  R. Knight,et al.  Finding the missing links among metabolites, microbes, and the host. , 2014, Immunity.

[822]  A. Ford,et al.  Systematic review with meta‐analysis: the efficacy of probiotics in inflammatory bowel disease , 2017, Alimentary pharmacology & therapeutics.

[823]  T. Dinan,et al.  microRNAs as novel antidepressant targets: converging effects of ketamine and electroconvulsive shock therapy in the rat hippocampus. , 2013, The international journal of neuropsychopharmacology.

[824]  U. Keyser,et al.  Bacterial Metabolite Indole Modulates Incretin Secretion from Intestinal Enteroendocrine L Cells , 2014, Cell reports.

[825]  A. Benson,et al.  Experimental evaluation of the importance of colonization history in early-life gut microbiota assembly , 2018, eLife.

[826]  J. Söderholm,et al.  Role of mast cells in chronic stress induced colonic epithelial barrier dysfunction in the rat , 2001, Gut.

[827]  P. Caroni,et al.  β-Adducin Is Required for Stable Assembly of New Synapses and Improved Memory upon Environmental Enrichment , 2011, Neuron.

[828]  M. Messaoudi,et al.  Beneficial psychological effects of a probiotic formulation (Lactobacillus helveticus R0052 and Bifidobacterium longum R0175) in healthy human volunteers , 2011, Gut microbes.

[829]  T. Borody,et al.  "Putting back the bugs": bacterial treatment relieves chronic constipation and symptoms of irritable bowel syndrome , 1993, The Medical journal of Australia.

[830]  W. Vale,et al.  The role of the hypothalamic-pituitary-adrenal axis in neuroendocrine responses to stress , 2006, Dialogues in clinical neuroscience.

[831]  Diána Bánáti,et al.  Nutrition for the ageing brain: Towards evidence for an optimal diet , 2017, Ageing Research Reviews.

[832]  Alessio Fasano,et al.  Mechanisms of Disease: the role of intestinal barrier function in the pathogenesis of gastrointestinal autoimmune diseases , 2005, Nature Clinical Practice Gastroenterology &Hepatology.

[833]  S. Heckenberg,et al.  Bacterial meningitis. , 2014, Handbook of clinical neurology.

[834]  R. Dobbs,et al.  Peripheral aetiopathogenic drivers and mediators of Parkinson’s disease and co-morbidities: role of gastrointestinal microbiota , 2015, Journal of NeuroVirology.

[835]  K. Thomas,et al.  A Simple Role for BDNF in Learning and Memory? , 2009, Front. Mol. Neurosci..

[836]  Stephen L. Hauser,et al.  Gut bacteria from multiple sclerosis patients modulate human T cells and exacerbate symptoms in mouse models , 2017, Proceedings of the National Academy of Sciences.

[837]  Jia-Yi Li,et al.  Direct evidence of Parkinson pathology spread from the gastrointestinal tract to the brain in rats , 2014, Acta Neuropathologica.

[838]  Piet A van den Brandt,et al.  Gut microbiota composition and development of atopic manifestations in infancy: the KOALA Birth Cohort Study , 2006, Gut.

[839]  Peter Meinicke,et al.  Tax4Fun: predicting functional profiles from metagenomic 16S rRNA data , 2015, Bioinform..

[840]  D. Bach Traumatische Erinnerungen medikamentös abschwächen , 2017 .

[841]  Michael Schroeter,et al.  Inflammation and glial responses in ischemic brain lesions , 1998, Progress in Neurobiology.

[842]  O. Cameron,et al.  Peripheral catecholamine levels and the symptoms of anxiety: studies in patients with and without pheochromocytoma. , 1990, Psychosomatic medicine.

[843]  S. Macfarlane,et al.  Microbial biofilms in the human gastrointestinal tract , 2007, Journal of applied microbiology.

[844]  Toshiro K. Ohsumi,et al.  The Microglial Sensome Revealed by Direct RNA Sequencing , 2013, Nature Neuroscience.

[845]  H. Berthoud,et al.  The vagus nerve, food intake and obesity , 2008, Regulatory Peptides.

[846]  S. V. van Deventer,et al.  Short chain fatty acids stimulate epithelial mucin 2 expression through differential effects on prostaglandin E(1) and E(2) production by intestinal myofibroblasts. , 2003, Gut.

[847]  R. Mirsky,et al.  Astrocyte-like glia in the peripheral nervous system: an immunohistochemical study of enteric glia , 1983, The Journal of neuroscience : the official journal of the Society for Neuroscience.

[848]  Jay N. Giedd,et al.  Adolescent mental health—Opportunity and obligation , 2014, Science.

[849]  R. Guigó,et al.  Reshaping the gut microbiome with bacterial transplantation and antibiotic intake. , 2010, Genome research.

[850]  J. Doré,et al.  The inflammatory status of old age can be nurtured from the intestinal environment , 2008, Current opinion in clinical nutrition and metabolic care.

[851]  T. Dinan,et al.  Deficiency of essential dietary n-3 PUFA disrupts the caecal microbiome and metabolome in mice , 2017, British Journal of Nutrition.

[852]  Hackett Cj ON THE ORIGIN OF THE HUMAN TREPONEMATOSES (PINTA, YAWS, ENDEMIC SYPHILIS AND VENEREAL SYPHILIS). , 1963 .

[853]  E. Pamer,et al.  Role of the commensal microbiota in normal and pathogenic host immune responses. , 2011, Cell host & microbe.

[854]  J. Bienenstock,et al.  Posttraumatic Stress Disorder: Does the Gut Microbiome Hold the Key? , 2016, Canadian journal of psychiatry. Revue canadienne de psychiatrie.

[855]  H. Braak,et al.  Neuropathological stageing of Alzheimer-related changes , 2004, Acta Neuropathologica.

[856]  Luis Carrasco,et al.  Identification of Fungal Species in Brain Tissue from Alzheimer's Disease by Next-Generation Sequencing. , 2017, Journal of Alzheimer's disease : JAD.

[857]  E. Quigley,et al.  The overlap between IBS and IBD – what is it and what does it mean? , 2014, Expert review of gastroenterology & hepatology.

[858]  Z. Ma Sketching the Human Microbiome Biogeography with DAR (Diversity-Area Relationship) Profiles , 2018, Microbial Ecology.

[859]  S. Celniker,et al.  Drosophila Histone Demethylase KDM5 Regulates Social Behavior through Immune Control and Gut Microbiota Maintenance. , 2019, Cell host & microbe.

[860]  J. Delgado-García,et al.  Dietary 2’-Fucosyllactose Enhances Operant Conditioning and Long-Term Potentiation via Gut-Brain Communication through the Vagus Nerve in Rodents , 2016, PloS one.

[861]  R. Molinari,et al.  Impact of Omega-3 Fatty Acids on the Gut Microbiota , 2017, International journal of molecular sciences.

[862]  W. Weichert,et al.  Fungi and inflammatory bowel diseases: Alterations of composition and diversity , 2008, Scandinavian journal of gastroenterology.

[863]  N. Câmara,et al.  Microbial-Based Therapies in the Treatment of Inflammatory Bowel Disease – An Overview of Human Studies , 2019, Front. Pharmacol..

[864]  Paul Wilmes,et al.  Human Gut Microbiome: Function Matters. , 2017, Trends in microbiology.

[865]  E. Coutinho,et al.  Does D-Cycloserine Enhance Exposure Therapy for Anxiety Disorders in Humans? A Meta-Analysis , 2014, PloS one.

[866]  Y. Ben-Ari,et al.  Term or Preterm Cesarean Section Delivery Does Not Lead to Long-term Detrimental Consequences in Mice. , 2019, Cerebral cortex.

[867]  C. Shively,et al.  Consumption of Mediterranean versus Western Diet Leads to Distinct Mammary Gland Microbiome Populations , 2018, Cell reports.

[868]  P. Cowen,et al.  Noradrenaline effects on social behaviour, intergroup relations, and moral decisions , 2016, Neuroscience & Biobehavioral Reviews.

[869]  H. Sokol,et al.  Lactobacillus rhamnosus CNCM I-3690 and the commensal bacterium Faecalibacterium prausnitzii A2-165 exhibit similar protective effects to induced barrier hyper-permeability in mice , 2015, Gut microbes.

[870]  Hong Wang,et al.  Inflammation Activates the Interferon Signaling Pathways in Taste Bud Cells , 2007, The Journal of Neuroscience.

[871]  Luke R. Thompson,et al.  Best practices for analysing microbiomes , 2018, Nature Reviews Microbiology.

[872]  M. Tanida,et al.  Intragastric injection of Lactobacillus casei strain Shirota suppressed spleen sympathetic activation by central corticotrophin-releasing factor or peripheral 2-deoxy-d-glucose in anesthetized rats , 2016, Neuroscience Letters.

[873]  R. Friedland Mechanisms of molecular mimicry involving the microbiota in neurodegeneration. , 2015, Journal of Alzheimer's disease : JAD.

[874]  F. Reimann,et al.  SCFAs strongly stimulate PYY production in human enteroendocrine cells , 2018, Scientific Reports.

[875]  L. Desbonnet,et al.  Microbiota is essential for social development in the mouse , 2013, Molecular Psychiatry.

[876]  L. Macia,et al.  Dietary fiber and the short‐chain fatty acid acetate promote resolution of neutrophilic inflammation in a model of gout in mice , 2017, Journal of leukocyte biology.

[877]  T. Dinan,et al.  Gender-dependent consequences of chronic olanzapine in the rat: effects on body weight, inflammatory, metabolic and microbiota parameters , 2012, Psychopharmacology.

[878]  L. Ferguson,et al.  Transcriptomics to study the effect of a Mediterranean-inspired diet on inflammation in Crohn's disease patients , 2013, Human Genomics.

[879]  Hepatic circadian clock oscillators and nuclear receptors integrate microbiome-derived signals , 2016, Scientific reports.

[880]  J. Gilbert Social behavior and the microbiome , 2015, eLife.

[881]  C. Mihalopoulos,et al.  A randomised controlled trial of dietary improvement for adults with major depression (the ‘SMILES’ trial) , 2017, BMC Medicine.

[882]  D. Molfese,et al.  Regulation of Histone Acetylation during Memory Formation in the Hippocampus* , 2004, Journal of Biological Chemistry.

[883]  E. Tongiorgi,et al.  Toward a unified biological hypothesis for the BDNF Val66Met-associated memory deficits in humans: a model of impaired dendritic mRNA trafficking , 2013, Front. Neurosci..

[884]  J. Raes,et al.  Population-level analysis of gut microbiome variation , 2016, Science.

[885]  Manuel A. Friese,et al.  Immunopathology of multiple sclerosis , 2015, Nature Reviews Immunology.

[886]  T. Dinan,et al.  Stress and the Microbiota–Gut–Brain Axis in Visceral Pain: Relevance to Irritable Bowel Syndrome , 2016, CNS neuroscience & therapeutics.

[887]  MA Wozniak,et al.  Herpes simplex virus type 1 DNA is located within Alzheimer's disease amyloid plaques , 2009, The Journal of pathology.

[888]  S. Tyski,et al.  Antimicrobial activity of selected non-antibiotics--activity of methotrexate against Staphylococcus aureus strains. , 2000, Acta poloniae pharmaceutica.

[889]  C. Winter,et al.  Gut Vagal Afferents Differentially Modulate Innate Anxiety and Learned Fear , 2014, The Journal of Neuroscience.

[890]  T. Wolever,et al.  Adiposity, gut microbiota and faecal short chain fatty acids are linked in adult humans , 2014, Nutrition & Diabetes.

[891]  T. Dinan,et al.  Kynurenine pathway metabolism and the microbiota-gut-brain axis , 2017, Neuropharmacology.

[892]  W. D. de Vos,et al.  The First Microbial Colonizers of the Human Gut: Composition, Activities, and Health Implications of the Infant Gut Microbiota , 2017, Microbiology and Molecular Biology Reviews.

[893]  D. Dallas,et al.  Consumption of human milk glycoconjugates by infant-associated bifidobacteria: mechanisms and implications. , 2013, Microbiology.

[894]  C. Leterrier,et al.  The influence of a probiotic supplementation on memory in quail suggests a role of gut microbiota on cognitive abilities in birds , 2017, Behavioural Brain Research.

[895]  E. Walker,et al.  Diagnostic and Statistical Manual of Mental Disorders , 2013 .

[896]  S. Ghosh,et al.  Review article: visceral hypersensitivity in irritable bowel syndrome: molecular mechanisms and therapeutic agents , 2009, Alimentary pharmacology & therapeutics.

[897]  Sterling C. Johnson,et al.  Gut microbiome alterations in Alzheimer’s disease , 2017, Scientific Reports.

[898]  Anders F. Andersson,et al.  Decreased gut microbiota diversity, delayed Bacteroidetes colonisation and reduced Th1 responses in infants delivered by Caesarean section , 2013, Gut.

[899]  X. Hébuterne Gut changes attributed to ageing: effects on intestinal microflora , 2003, Current opinion in clinical nutrition and metabolic care.

[900]  T. Dinan,et al.  Feeding melancholic microbes: MyNewGut recommendations on diet and mood. , 2019, Clinical nutrition.

[901]  D. Nielsen,et al.  A prebiotic intervention study in children with autism spectrum disorders (ASDs) , 2018, Microbiome.

[902]  Liquan Huang,et al.  Defects in the Peripheral Taste Structure and Function in the MRL/lpr Mouse Model of Autoimmune Disease , 2012, PloS one.

[903]  M. Eisen,et al.  Microbiome-by-ethanol interactions impact Drosophila melanogaster fitness and physiology , 2017 .

[904]  Rob Knight,et al.  Gut Microbiota Regulate Motor Deficits and Neuroinflammation in a Model of Parkinson’s Disease , 2016, Cell.

[905]  E R Kandel,et al.  Cellular analysis of long-term habituation of the gill-withdrawal reflex of Aplysia californica. , 1978, Science.

[906]  M. Veldhoen,et al.  Microbiota derived short chain fatty acids promote histone crotonylation in the colon through histone deacetylases , 2018, Nature Communications.

[907]  A. Kraneveld,et al.  Altered gut microbiota and activity in a murine model of autism spectrum disorders , 2014, Brain, Behavior, and Immunity.

[908]  Dolores Corella,et al.  Primary prevention of cardiovascular disease with a Mediterranean diet. , 2013, The New England journal of medicine.

[909]  Robert J. Moore,et al.  Translocation and dissemination of commensal bacteria in post-stroke infection , 2016, Nature Medicine.

[910]  Ali Keshavarzian,et al.  Colonic bacterial composition in Parkinson's disease , 2015, Movement disorders : official journal of the Movement Disorder Society.

[911]  T. Dinan,et al.  A Distinct Profile of Tryptophan Metabolism along the Kynurenine Pathway Downstream of Toll-Like Receptor Activation in Irritable Bowel Syndrome , 2012, Front. Pharmacol..

[912]  Elke Edelmann,et al.  Pre- and postsynaptic twists in BDNF secretion and action in synaptic plasticity , 2014, Neuropharmacology.

[913]  P. Bork,et al.  Richness of human gut microbiome correlates with metabolic markers , 2013, Nature.

[914]  Christopher Rex,et al.  Early life diet containing prebiotics and bioactive whey protein fractions increased dendritic spine density of rat hippocampal neurons , 2016, International Journal of Developmental Neuroscience.

[915]  M. Stephenson,et al.  The production of acetylcholine by a strain of Lactobacillus plantarum. , 1947, Journal of general microbiology.

[916]  R. Schwarcz,et al.  Kynurenines in the mammalian brain: when physiology meets pathology , 2012, Nature Reviews Neuroscience.

[917]  T. Dinan,et al.  Microbiota-related Changes in Bile Acid & Tryptophan Metabolism are Associated with Gastrointestinal Dysfunction in a Mouse Model of Autism , 2017, EBioMedicine.

[918]  A. Medvedev,et al.  Biological targets for isatin and its analogues: Implications for therapy , 2007, Biologics : targets & therapy.

[919]  Chunxia Wang,et al.  Leucine Deprivation Decreases Fat Mass by Stimulation of Lipolysis in White Adipose Tissue and Upregulation of Uncoupling Protein 1 (UCP1) in Brown Adipose Tissue , 2009, Diabetes.

[920]  W. Wiersinga,et al.  The Intestinal Microbiome in Infectious Diseases: The Clinical Relevance of a Rapidly Emerging Field , 2017, Open forum infectious diseases.

[921]  J. Gruenwald,et al.  Effect of a probiotic multivitamin compound on stress and exhaustion , 2002, Advances in therapy.

[922]  Alexander V. Zhdanov,et al.  Prenatal stress-induced alterations in major physiological systems correlate with gut microbiota composition in adulthood , 2015, Psychoneuroendocrinology.

[923]  Colin Hill,et al.  Exploiting gut bacteriophages for human health. , 2014, Trends in microbiology.

[924]  The contribution of culturomics to the repertoire of isolated human bacterial and archaeal species , 2018, Microbiome.

[925]  Karsten Zengler,et al.  GABA Modulating Bacteria of the Human Gut Microbiota , 2018, Nature Microbiology.

[926]  H. Berthoud,et al.  Functional and chemical anatomy of the afferent vagal system , 2000, Autonomic Neuroscience.

[927]  B. Shenderov,et al.  Neuromodulatory effects and targets of the SCFAs and gasotransmitters produced by the human symbiotic microbiota , 2016, Microbial ecology in health and disease.

[928]  A. Fischer,et al.  Ly6C(hi) Monocytes Provide a Link between Antibiotic-Induced Changes in Gut Microbiota and Adult Hippocampal Neurogenesis. , 2016, Cell reports.

[929]  S. J. White,et al.  Identification of peptide sequences that induce the transport of phage across the gastrointestinal mucosal barrier. , 2004, Journal of virological methods.

[930]  T. Dinan,et al.  Serotonin, tryptophan metabolism and the brain-gut-microbiome axis , 2015, Behavioural Brain Research.

[931]  G. Schütz,et al.  Transcriptional regulation of the tryptophan oxygenase gene in rat liver by glucocorticoids. , 1983, The Journal of biological chemistry.

[932]  R. Gibbs,et al.  Structure and function of the healthy pre-adolescent pediatric gut microbiome , 2015, Microbiome.

[933]  H. Tan,et al.  Eradication of Helicobacter pylori Infection Improves Levodopa Action, Clinical Symptoms and Quality of Life in Patients with Parkinson's Disease , 2014, PloS one.

[934]  H. Hallen-Adams,et al.  Fungi in the healthy human gastrointestinal tract , 2017, Virulence.

[935]  A. Moschetta,et al.  Microbiota modification with probiotics induces hepatic bile acid synthesis via downregulation of the Fxr-Fgf15 axis in mice. , 2014, Cell reports.

[936]  Neena Modi,et al.  Fermentable Carbohydrate Alters Hypothalamic Neuronal Activity and Protects Against the Obesogenic Environment , 2012, Obesity.

[937]  J. Cryan,et al.  Resilience priming: Translational models for understanding resiliency and adaptation to early life adversity , 2018, Developmental psychobiology.

[938]  C. Gahan,et al.  Bile Acid Modifications at the Microbe-Host Interface: Potential for Nutraceutical and Pharmaceutical Interventions in Host Health. , 2016, Annual review of food science and technology.

[939]  Sarah C. P. Williams Gnotobiotics , 2014, Proceedings of the National Academy of Sciences.

[940]  B. Hyman,et al.  The Alzheimer's Disease-Associated Amyloid β-Protein Is an Antimicrobial Peptide , 2010, PloS one.

[941]  John F. Cryan,et al.  Adding fuel to the fire: the impact of stress on the ageing brain , 2015, Trends in Neurosciences.

[942]  Zhijun Li,et al.  The level of lipopolysaccharide-binding protein is elevated in adult patients with obstructive sleep apnea , 2018, BMC Pulmonary Medicine.

[943]  Imre Bartos,et al.  A gut microbial factor modulates locomotor behavior in Drosophila , 2018, Nature.

[944]  S. Georgescu,et al.  Brief History of Syphilis , 2014, Journal of medicine and life.

[945]  S. Costanzo,et al.  Adherence to a Mediterranean diet is associated with a better health-related quality of life: a possible role of high dietary antioxidant content , 2013, BMJ Open.

[946]  J. Belmont,et al.  Serial Fecal Microbiota Transplantation Alters Mucosal Gene Expression in Pediatric Ulcerative Colitis , 2015, The American Journal of Gastroenterology.

[947]  B. Wang,et al.  Lactoferrin Promotes Early Neurodevelopment and Cognition in Postnatal Piglets by Upregulating the BDNF Signaling Pathway and Polysialylation , 2014, Molecular Neurobiology.

[948]  A. Nimmerjahn,et al.  The Role of Microglia in the Healthy Brain , 2011, The Journal of Neuroscience.

[949]  R. Lipton,et al.  Towards a mechanism-based classification of pain? , 1998, Pain.

[950]  W. Le,et al.  Galactooligosaccharide improves the animal survival and alleviates motor neuron death in SOD1G93A mouse model of amyotrophic lateral sclerosis , 2013, Neuroscience.

[951]  Jean M. Macklaim,et al.  Microbiome Datasets Are Compositional: And This Is Not Optional , 2017, Front. Microbiol..

[952]  Yuxin Wu,et al.  Psychotropic effects of Lactobacillus plantarum PS128 in early life-stressed and naïve adult mice , 2016, Brain Research.

[953]  R. Rastall,et al.  Human milk and related oligosaccharides as prebiotics. , 2013, Current opinion in biotechnology.

[954]  Taxa-function robustness in microbial communities , 2018, Microbiome.

[955]  E. Hsiao,et al.  The gut microbiota mediates reward and sensory responses associated with regimen-selective morphine dependence , 2018, Neuropsychopharmacology.

[956]  William Beaumont,et al.  Experiments and Observations on the Gastric Juice, and the Physiology of Digestion , 1834, The Medico-chirurgical review.

[957]  M. Neunlist,et al.  Maternal exposure to GOS/inulin mixture prevents food allergies and promotes tolerance in offspring in mice , 2016, Allergy.

[958]  Michael J. Barratt,et al.  Sialylated Milk Oligosaccharides Promote Microbiota-Dependent Growth in Models of Infant Undernutrition , 2016, Cell.

[959]  R. Palmiter,et al.  Genetically and functionally defined NTS to PBN brain circuits mediating anorexia , 2016, Nature Communications.

[960]  J. Huneau,et al.  Effects of amino acid-derived luminal metabolites on the colonic epithelium and physiopathological consequences , 2007, Amino Acids.

[961]  C. Bernardi,et al.  Histamine food poisonings: A systematic review and meta-analysis , 2018, Critical reviews in food science and nutrition.

[962]  J. Miklossy Bacterial Amyloid and DNA are Important Constituents of Senile Plaques: Further Evidence of the Spirochetal and Biofilm Nature of Senile Plaques , 2016, Journal of Alzheimer's disease : JAD.

[963]  Tyrone D. Cannon,et al.  Common genetic determinants of schizophrenia and bipolar disorder in Swedish families: a population-based study , 2009, The Lancet.

[964]  R. De Giorgio,et al.  Enteroendocrine cells: a review of their role in brain–gut communication , 2016, Neurogastroenterology and motility : the official journal of the European Gastrointestinal Motility Society.

[965]  G. Frost,et al.  The short chain fatty acid propionate stimulates GLP-1 and PYY secretion via free fatty acid receptor 2 in rodents , 2014, International Journal of Obesity.

[966]  K. Abe,et al.  Therapeutic potential of Bifidobacterium breve strain A1 for preventing cognitive impairment in Alzheimer’s disease , 2017, Scientific Reports.

[967]  C. Bulik,et al.  Academy for eating disorders position paper: eating disorders are serious mental illnesses. , 2009, The International journal of eating disorders.

[968]  K. Korpela,et al.  Maternal prenatal stress is associated with the infant intestinal microbiota , 2015, Psychoneuroendocrinology.

[969]  Manolito Torralba,et al.  Enteric dysbiosis associated with a mouse model of alcoholic liver disease , 2011, Hepatology.

[970]  Saijun Fan,et al.  Gut microbiota modulates alcohol withdrawal-induced anxiety in mice. , 2018, Toxicology letters.

[971]  Á. Somogyi,et al.  Prolonged restraint stressor exposure in outbred CD-1 mice impacts microbiota, colonic inflammation, and short chain fatty acids , 2018, PloS one.

[972]  T. Matozaki,et al.  Regulation by commensal bacteria of neurogenesis in the subventricular zone of adult mouse brain. , 2018, Biochemical and biophysical research communications.

[973]  Jennifer M. Fettweis,et al.  Does the human placenta delivered at term have a microbiota? Results of cultivation, quantitative real‐time PCR, 16S rRNA gene sequencing, and metagenomics , 2019, American journal of obstetrics and gynecology.

[974]  James T. Morton,et al.  The Microbiome in Posttraumatic Stress Disorder and Trauma-Exposed Controls: An Exploratory Study , 2017, Psychosomatic medicine.

[975]  P. Valle,et al.  Faecal microbiota transplantation versus placebo for moderate-to-severe irritable bowel syndrome: a double-blind, randomised, placebo-controlled, parallel-group, single-centre trial. , 2018, The lancet. Gastroenterology & hepatology.

[976]  J. Bienenstock,et al.  Microbiota and the gut-brain axis. , 2015, Nutrition reviews.

[977]  J. Rekling,et al.  Profiling of G protein-coupled receptors in vagal afferents reveals novel gut-to-brain sensing mechanisms , 2018, Molecular metabolism.

[978]  L. Selemon A role for synaptic plasticity in the adolescent development of executive function , 2013, Translational Psychiatry.

[979]  R. Sleator,et al.  Advances in the Microbiome: Applications to Clostridium difficile Infection , 2016, Journal of clinical medicine.

[980]  E. Lindberg,et al.  Obstructive sleep apnea is a common disorder in the population-a review on the epidemiology of sleep apnea. , 2015, Journal of thoracic disease.

[981]  K. Konstantinidis,et al.  Strengths and Limitations of 16S rRNA Gene Amplicon Sequencing in Revealing Temporal Microbial Community Dynamics , 2014, PloS one.

[982]  T. Roseboom,et al.  A systematic review and meta‐analysis of lifestyle interventions in women of reproductive age with overweight or obesity: the effects on symptoms of depression and anxiety , 2018, Obesity reviews : an official journal of the International Association for the Study of Obesity.

[983]  Z. Cao,et al.  Preparing the Gut with Antibiotics Enhances Gut Microbiota Reprogramming Efficiency by Promoting Xenomicrobiota Colonization , 2017, Front. Microbiol..

[984]  T. Sharpton,et al.  Ecophylogenetics Clarifies the Evolutionary Association between Mammals and Their Gut Microbiota , 2018, mBio.

[985]  J. Neu,et al.  The Neonatal Microbiome and Its Partial Role in Mediating the Association between Birth by Cesarean Section and Adverse Pediatric Outcomes , 2018, Neonatology.

[986]  M. Noakes,et al.  Fecal butyrate levels vary widely among individuals but are usually increased by a diet high in resistant starch. , 2011, The Journal of nutrition.

[987]  Cinzia Nasuti,et al.  Microbiota modulation counteracts Alzheimer’s disease progression influencing neuronal proteolysis and gut hormones plasma levels , 2017, Scientific Reports.

[988]  F. Guengerich,et al.  Oxidation of indole by cytochrome P450 enzymes. , 2000, Biochemistry.

[989]  R. Radcliffe,et al.  The Acute Influence of Acid Suppression with Esomeprazole on Gastrointestinal Microbiota and Brain Gene Expression Profiles in a Murine Model of Restraint Stress , 2019, Neuroscience.

[990]  H. Matsuzawa,et al.  Effects of germfree status and food restriction on longevity and growth of mice. , 1991, Jikken dobutsu. Experimental animals.

[991]  S. Neupane,et al.  Characterization of gut microbiota composition and functions in patients with chronic alcohol overconsumption , 2019, Gut microbes.

[992]  A. Mitchell,et al.  Mortality rates in patients with anorexia nervosa and other eating disorders. A meta-analysis of 36 studies. , 2011, Archives of general psychiatry.

[993]  J. Huizinga,et al.  Lactobacillus reuteri ingestion prevents hyperexcitability of colonic DRG neurons induced by noxious stimuli. , 2009, American journal of physiology. Gastrointestinal and liver physiology.

[994]  P. A. van den Brandt,et al.  Factors Influencing the Composition of the Intestinal Microbiota in Early Infancy , 2006, Pediatrics.

[995]  G. MacQueen,et al.  Bacterial infection causes stress-induced memory dysfunction in mice , 2010, Gut.

[996]  J. Schrenzel,et al.  Functional Gut Microbiota Remodeling Contributes to the Caloric Restriction-Induced Metabolic Improvements , 2018, Cell metabolism.

[997]  E. Quigley The Gut-Brain Axis and the Microbiome: Clues to Pathophysiology and Opportunities for Novel Management Strategies in Irritable Bowel Syndrome (IBS) , 2018, Journal of clinical medicine.

[998]  T. Dinan,et al.  Neurobehavioural effects of Lactobacillus rhamnosus GG alone and in combination with prebiotics polydextrose and galactooligosaccharide in male rats exposed to early-life stress , 2017, Nutritional neuroscience.

[999]  Liping Zhao,et al.  Structural modulation of gut microbiota in life-long calorie-restricted mice , 2013, Nature Communications.

[1000]  E. Laconi,et al.  Caloric restriction promotes functional changes involving short-chain fatty acid biosynthesis in the rat gut microbiota , 2018, Scientific Reports.

[1001]  D. Warren,et al.  Central nervous system infections: meningitis and brain abscess. , 2009, Infectious disease clinics of North America.

[1002]  H. Berthoud Vagal and hormonal gut–brain communication: from satiation to satisfaction , 2008, Neurogastroenterology and motility : the official journal of the European Gastrointestinal Motility Society.

[1003]  K. Jin,et al.  Microbiota-gut-brain axis and the central nervous system , 2017, OncoTarget.

[1004]  Gonzalo Viana Di Prisco,et al.  Microbial Reconstitution Reverses Maternal Diet-Induced Social and Synaptic Deficits in Offspring , 2016, Cell.

[1005]  T. Dinan,et al.  The microbiome: A key regulator of stress and neuroinflammation , 2016, Neurobiology of Stress.

[1006]  D. Doak,et al.  The Keystone-Species Concept in Ecology and ConservationManagement and policy must explicitly consider the complexity of interactions in natural systems , 1993 .

[1007]  G. Wilcock,et al.  Latent herpes simplex virus type 1 in normal and Alzheimer's disease brains , 1991, Journal of medical virology.

[1008]  R. Spiller,et al.  Irritable bowel syndrome , 2015, Nature Reviews Disease Primers.

[1009]  J. Sonnenburg,et al.  Starving our microbial self: the deleterious consequences of a diet deficient in microbiota-accessible carbohydrates. , 2014, Cell metabolism.

[1010]  T. Dinan,et al.  Gut–brain axis in 2016: Brain–gut–microbiota axis — mood, metabolism and behaviour , 2017, Nature Reviews Gastroenterology &Hepatology.

[1011]  Xin Wang,et al.  Butyrate Enhances Intestinal Epithelial Barrier Function via Up-Regulation of Tight Junction Protein Claudin-1 Transcription , 2012, Digestive Diseases and Sciences.

[1012]  Jimmy D. Bell,et al.  Impact of Resistant Starch on Body Fat Patterning and Central Appetite Regulation , 2007, PloS one.

[1013]  J. Miklossy Alzheimer's disease--a spirochetosis? , 1993, NeuroReport.

[1014]  M. Brosnan,et al.  Branched-chain amino acids: enzyme and substrate regulation. , 2006, The Journal of nutrition.

[1015]  P. Xie,et al.  Effects of gut microbiota on the microRNA and mRNA expression in the hippocampus of mice , 2017, Behavioural Brain Research.

[1016]  D. Laukens,et al.  Chronic cigarette smoke exposure induces microbial and inflammatory shifts and mucin changes in the murine gut. , 2016, Environmental microbiology.

[1017]  N. Chattipakorn,et al.  Decreased microglial activation through gut-brain axis by prebiotics, probiotics, or synbiotics effectively restored cognitive function in obese-insulin resistant rats , 2018, Journal of Neuroinflammation.

[1018]  Steve L Taylor,et al.  Bacterial Histamine Production as a Function of Temperature and Time of Incubation , 1982 .

[1019]  Zhiping Weng,et al.  Unexpected role of interferon-γ in regulating neuronal connectivity and social behavior , 2016, Nature.

[1020]  A. Heerschap,et al.  Butyrate restores HFD-induced adaptations in brain function and metabolism in mid-adult obese mice , 2017, International Journal of Obesity.

[1021]  J. Doré,et al.  The Firmicutes/Bacteroidetes ratio of the human microbiota changes with age , 2009, BMC Microbiology.

[1022]  F J Ballard,et al.  Production and utilization of acetate in mammals. , 1974, The Biochemical journal.

[1023]  T. Dinan,et al.  Early‐life stress‐induced visceral hypersensitivity and anxiety behavior is reversed by histone deacetylase inhibition , 2015, Neurogastroenterology and motility : the official journal of the European Gastrointestinal Motility Society.

[1024]  H. Eutamene,et al.  Lactobacillus farciminis treatment attenuates stress‐induced overexpression of Fos protein in spinal and supraspinal sites after colorectal distension in rats , 2009, Neurogastroenterology and motility : the official journal of the European Gastrointestinal Motility Society.

[1025]  F. Dickerson,et al.  Adjunctive probiotic microorganisms to prevent rehospitalization in patients with acute mania: A randomized controlled trial , 2018, Bipolar disorders.

[1026]  Susan P. Mattern The Prince of Medicine: Galen in the Roman Empire , 2013 .

[1027]  M. Blaut,et al.  The Intestinal Microbiota in Metabolic Disease , 2016, Nutrients.

[1028]  N. Badr,et al.  Activation in vagal afferents and central autonomic pathways: Early responses to intestinal infection with Campylobacter jejuni , 2005, Brain, Behavior, and Immunity.

[1029]  T. Dinan,et al.  Selective influence of host microbiota on cAMP‐mediated ion transport in mouse colon , 2014, Neurogastroenterology and motility : the official journal of the European Gastrointestinal Motility Society.

[1030]  P. Scully,et al.  The microbiome-gut-brain axis during early life regulates the hippocampal serotonergic system in a sex-dependent manner , 2013, Molecular Psychiatry.

[1031]  V. Mohan,et al.  Improvement in glucose tolerance and insulin sensitivity by probiotic strains of Indian gut origin in high-fat diet-fed C57BL/6J mice , 2018, European Journal of Nutrition.

[1032]  Rob Knight,et al.  American Gut: an Open Platform for Citizen Science Microbiome Research , 2018, mSystems.

[1033]  M. Gershon,et al.  The bowel and beyond: the enteric nervous system in neurological disorders , 2016, Nature Reviews Gastroenterology &Hepatology.

[1034]  Colin Hill,et al.  Bile Salt Hydrolase Activity in Probiotics , 2006, Applied and Environmental Microbiology.

[1035]  H. Vogel,et al.  Gut microbiota and glucometabolic alterations in response to recurrent partial sleep deprivation in normal-weight young individuals , 2016, Molecular metabolism.

[1036]  S. Glickman,et al.  Hebb Revisited: Perception, Plasticity, and the Hebb Synapse. , 1994 .

[1037]  Z. Ma Power law analysis of the human microbiome , 2015, Molecular ecology.

[1038]  Wei Wang,et al.  Faecalibacterium prausnitzii (ATCC 27766) has preventive and therapeutic effects on chronic unpredictable mild stress-induced depression-like and anxiety-like behavior in rats , 2019, Psychoneuroendocrinology.

[1039]  Peptidoglycan types of bacterial cell walls and their taxonomic implications , 1972 .

[1040]  T. Dinan,et al.  More than a Gut Feeling: the Microbiota Regulates Neurodevelopment and Behavior , 2015, Neuropsychopharmacology.

[1041]  T. Dinan,et al.  The Neuroendocrinology of the Microbiota-Gut-Brain Axis: A Behavioural Perspective , 2018, Frontiers in Neuroendocrinology.

[1042]  H. Chuang,et al.  Alteration of behavior and monoamine levels attributable to Lactobacillus plantarum PS128 in germ-free mice , 2016, Behavioural Brain Research.

[1043]  F. Dickerson,et al.  Immunomodulatory Effects of Probiotic Supplementation in Schizophrenia Patients: A Randomized, Placebo-Controlled Trial , 2015, Biomarker insights.

[1044]  L. T. Angenent,et al.  Succession of microbial consortia in the developing infant gut microbiome , 2010, Proceedings of the National Academy of Sciences.

[1045]  S. Muñoz-Criado,et al.  In-vitro activity of psychiatric drugs against Corynebacterium urealyticum (Corynebacterium group D2). , 1996, The Journal of antimicrobial chemotherapy.

[1046]  V. Sperandio,et al.  Bacterial Adrenergic Sensors Regulate Virulence of Enteric Pathogens in the Gut , 2016, mBio.

[1047]  Grant J. Smith,et al.  ADHD Is Associated With a “Western” Dietary Pattern in Adolescents , 2011, Journal of attention disorders.

[1048]  Cynthia Rodriguez,et al.  Amniotic fluid from healthy term pregnancies does not harbor a detectable microbial community , 2018, Microbiome.

[1049]  S. Burleigh,et al.  Lingonberries and their two separated fractions differently alter the gut microbiota, improve metabolic functions, reduce gut inflammatory properties, and improve brain function in ApoE−/− mice fed high-fat diet , 2018, Nutritional neuroscience.

[1050]  R. Sanson-Fisher,et al.  Prevalence of comorbid depression and obesity in general practice: a cross-sectional survey , 2014, The British journal of general practice : the journal of the Royal College of General Practitioners.

[1051]  William Tottey,et al.  Archaea and the human gut: new beginning of an old story. , 2014, World journal of gastroenterology.

[1052]  J. Raes,et al.  The neuroactive potential of the human gut microbiota in quality of life and depression , 2019, Nature Microbiology.

[1053]  C. Huttenhower,et al.  Experimental design and quantitative analysis of microbial community multiomics , 2017, Genome Biology.

[1054]  V. Sperandio,et al.  QseC Inhibitors as an Antivirulence Approach for Gram-Negative Pathogens , 2014, mBio.

[1055]  G. Eberl,et al.  A Weaning Reaction to Microbiota Is Required for Resistance to Immunopathologies in the Adult. , 2019, Immunity.

[1056]  I. Barajon,et al.  Toll-like Receptors 3, 4, and 7 Are Expressed in the Enteric Nervous System and Dorsal Root Ganglia , 2009, The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society.

[1057]  M. Christman,et al.  Evaluation of Bacillus subtilis R0179 on gastrointestinal viability and general wellness: a randomised, double-blind, placebo-controlled trial in healthy adults. , 2015, Beneficial microbes.

[1058]  D. Wied,et al.  Central Nervous System Effects of the Neurohypophyseal Hormones and Related Peptides , 1993, Frontiers in Neuroendocrinology.

[1059]  P. Allen,et al.  Diet modulates colonic T cell responses by regulating the expression of a Bacteroides thetaiotaomicron antigen , 2019, Science Immunology.

[1060]  X. Mao,et al.  Different Lipopolysaccharide Branched-Chain Amino Acids Modulate Porcine Intestinal Endogenous β-Defensin Expression through the Sirt1/ERK/90RSK Pathway. , 2016, Journal of agricultural and food chemistry.

[1061]  Arthur W. Toga,et al.  Blood-Brain Barrier Breakdown in the Aging Human Hippocampus , 2015, Neuron.

[1062]  Roy H. Perlis,et al.  Increased synapse elimination by microglia in schizophrenia patient-derived models of synaptic pruning , 2019, Nature Neuroscience.

[1063]  C. Scagnolari,et al.  A pilot study on the effects of probiotic supplementation on neuropsychological performance and microRNA‐29a‐c levels in antiretroviral‐treated HIV‐1‐infected patients , 2017, Brain and behavior.

[1064]  B. Franke,et al.  Gut microbiome in ADHD and its relation to neural reward anticipation , 2017, PloS one.

[1065]  J. Fernstrom Branched-chain amino acids and brain function. , 2005, The Journal of nutrition.

[1066]  V. Baracos,et al.  Understanding the mechanisms and treatment options in cancer cachexia , 2013, Nature Reviews Clinical Oncology.

[1067]  U. Dirnagl,et al.  The Gut Microbiome as Therapeutic Target in Central Nervous System Diseases: Implications for Stroke , 2016, Neurotherapeutics.

[1068]  Jing Zhang,et al.  Tripchlorolide improves age-associated cognitive deficits by reversing hippocampal synaptic plasticity impairment and NMDA receptor dysfunction in SAMP8 mice , 2014, Behavioural Brain Research.

[1069]  G. Wegener,et al.  Altered fecal microbiota composition in the Flinders sensitive line rat model of depression , 2018, Psychopharmacology.

[1070]  P. Scully,et al.  Early Life Stress Alters Behavior, Immunity, and Microbiota in Rats: Implications for Irritable Bowel Syndrome and Psychiatric Illnesses , 2009, Biological Psychiatry.

[1071]  P. Nilsson,et al.  Economic Burden of Obesity: A Systematic Literature Review , 2017, International journal of environmental research and public health.

[1072]  J. Jane,et al.  Resistant Starch Alters the Microbiota-Gut Brain Axis: Implications for Dietary Modulation of Behavior , 2016, PloS one.

[1073]  P. Bork,et al.  Enterotypes of the human gut microbiome , 2011, Nature.

[1074]  Jonathan Kipnis,et al.  Interactions of innate and adaptive immunity in brain development and function , 2015, Brain Research.

[1075]  W. Langhans,et al.  Cognitive effects of subdiaphragmatic vagal deafferentation in rats , 2017, Neurobiology of Learning and Memory.

[1076]  S. Cole,et al.  Towards a systems view of IBS , 2015, Nature Reviews Gastroenterology &Hepatology.

[1077]  Lactobacillus supplementation for diarrhoea related to chemotherapy of colorectal cancer: a randomised study , 2007, British Journal of Cancer.

[1078]  H. Berthoud,et al.  Neuroanatomy of extrinsic afferents supplying the gastrointestinal tract , 2004, Neurogastroenterology and motility : the official journal of the European Gastrointestinal Motility Society.

[1079]  J. Bornstein,et al.  The relation between cesarean birth and child cognitive development , 2017, Scientific Reports.

[1080]  K. Berding,et al.  Dietary Prebiotics, Milk Fat Globule Membrane, and Lactoferrin Affects Structural Neurodevelopment in the Young Piglet , 2016, Front. Pediatr..

[1081]  C. Tsigos,et al.  Hypothalamic-pituitary-adrenal axis, neuroendocrine factors and stress. , 2002, Journal of psychosomatic research.

[1082]  C. Akdis,et al.  Histamine-secreting microbes are increased in the gut of adult asthma patients. , 2016, The Journal of allergy and clinical immunology.

[1083]  M. Watson,et al.  The Madness of Microbiome: Attempting To Find Consensus “Best Practice” for 16S Microbiome Studies , 2018, Applied and Environmental Microbiology.

[1084]  V. Théodorou,et al.  Synergy between Lactobacillus paracasei and its bacterial products to counteract stress-induced gut permeability and sensitivity increase in rats. , 2007, The Journal of nutrition.

[1085]  M. Lyte,et al.  Fluoxetine-induced alteration of murine gut microbial community structure: evidence for a microbial endocrinology-based mechanism of action responsible for fluoxetine-induced side effects , 2019, PeerJ.

[1086]  C. Dees,et al.  Effect of Bacterial Flora and Mouse Genotype (Euthymic or Athymic) on Scrapie Pathogenesis , 1986, Journal of leukocyte biology.

[1087]  R. Richardson,et al.  Early-life stress, microbiota, and brain development: probiotics reverse the effects of maternal separation on neural circuits underpinning fear expression and extinction in infant rats , 2019, Developmental Cognitive Neuroscience.

[1088]  S. Rampelli,et al.  Gut Microbiota and Extreme Longevity , 2016, Current Biology.

[1089]  Katherine H. Huang,et al.  Structure, Function and Diversity of the Healthy Human Microbiome , 2012, Nature.

[1090]  A. Khoruts,et al.  Stable engraftment of human microbiota into mice with a single oral gavage following antibiotic conditioning , 2017, Microbiome.

[1091]  Kelcie Hubach,et al.  Different Types of Resistant Starch Elicit Different Glucose Reponses in Humans , 2010, Journal of nutrition and metabolism.

[1092]  Valentin A. Pavlov,et al.  The cholinergic anti-inflammatory pathway , 2005, Brain, Behavior, and Immunity.

[1093]  J. Escardo,et al.  The central organization of the vagus nerve innervating the colon of the rat. , 1993, Gastroenterology.

[1094]  E. Distrutti,et al.  The Bile Acid Receptor FXR Is a Modulator of Intestinal Innate Immunity1 , 2009, The Journal of Immunology.

[1095]  M. Thakkar Histamine in the regulation of wakefulness. , 2011, Sleep medicine reviews.

[1096]  K. Djafarian,et al.  Effect of probiotic and prebiotic vs placebo on psychological outcomes in patients with major depressive disorder: A randomized clinical trial. , 2019, Clinical nutrition.

[1097]  T. Powley,et al.  Vagal innervation of intestines: afferent pathways mapped with new en bloc horseradish peroxidase adaptation , 2007, Cell and Tissue Research.

[1098]  S. Adhya,et al.  Phage Therapy: Current Research and Applications , 2015 .

[1099]  J. Bennet,et al.  TREATMENT OF ULCERATIVE COLITIS BY IMPLANTATION OF NORMAL COLONIC FLORA , 1989, The Lancet.

[1100]  Marco Prinz,et al.  Communicating systems in the body: how microbiota and microglia cooperate , 2017, Immunology.

[1101]  J. Foster,et al.  Metabolic and Microbiota Measures as Peripheral Biomarkers in Major Depressive Disorder , 2018, Front. Psychiatry.

[1102]  J. Knott The organization of behavior: A neuropsychological theory , 1951 .

[1103]  J. Chudek,et al.  Toxin profile of fecal Clostridium perfringens strains isolated from children with autism spectrum disorders. , 2018, Anaerobe.

[1104]  J. Foster,et al.  Reduced anxiety‐like behavior and central neurochemical change in germ‐free mice , 2011, Neurogastroenterology and motility : the official journal of the European Gastrointestinal Motility Society.

[1105]  Harvard Medical School,et al.  Speciation by Symbiosis: the Microbiome and Behavior , 2016, mBio.

[1106]  T. Dinan,et al.  Drunk bugs: Chronic vapour alcohol exposure induces marked changes in the gut microbiome in mice , 2017, Behavioural Brain Research.

[1107]  J. Foster,et al.  Gut–brain axis: how the microbiome influences anxiety and depression , 2013, Trends in Neurosciences.

[1108]  D. Savage,et al.  Influences of Dietary and Environmental Stress on Microbial Populations in the Murine Gastrointestinal Tract , 1974, Infection and immunity.

[1109]  R. Hagerman,et al.  The Gut Microbiota and Autism Spectrum Disorders , 2017, Front. Cell. Neurosci..

[1110]  G. Silecchia,et al.  Gut Microbiota Markers in Obese Adolescent and Adult Patients: Age-Dependent Differential Patterns , 2018, Front. Microbiol..

[1111]  K. Aagaard,et al.  Maturation of the Infant Microbiome Community Structure and Function Across Multiple Body Sites and in Relation to Mode of Delivery , 2017, Nature Medicine.

[1112]  D. Ciocan,et al.  Intestinal microbiota contributes to individual susceptibility to alcoholic liver disease , 2015, Gut.

[1113]  S. Bilbo,et al.  Got worms? Perinatal exposure to helminths prevents persistent immune sensitization and cognitive dysfunction induced by early-life infection , 2016, Brain, Behavior, and Immunity.

[1114]  D. Bannerman,et al.  Prebiotic administration normalizes lipopolysaccharide (LPS)-induced anxiety and cortical 5-HT2A receptor and IL1-β levels in male mice , 2016, Brain, Behavior, and Immunity.

[1115]  M. Blaser,et al.  Association of caesarean delivery with child adiposity from age 6 weeks to 15 years , 2013, International Journal of Obesity.

[1116]  Edmund T. Rolls,et al.  Taste, olfactory, and food reward value processing in the brain , 2015, Progress in Neurobiology.

[1117]  S. Keely,et al.  Ursodeoxycholic acid and lithocholic acid exert anti-inflammatory actions in the colon 3 4 , 2017 .

[1118]  Laurette Dubé,et al.  Beyond the “I” in the Obesity Epidemic: A Review of Social Relational and Network Interventions on Obesity , 2013, Journal of obesity.

[1119]  S. Hashioka,et al.  Clostridium butyricum MIYAIRI 588 as Adjunctive Therapy for Treatment-Resistant Major Depressive Disorder: A Prospective Open-Label Trial , 2018, Clinical neuropharmacology.

[1120]  Paul Forsythe,et al.  Lactobacillus reuteri enhances excitability of colonic AH neurons by inhibiting calcium‐dependent potassium channel opening , 2009, Journal of cellular and molecular medicine.

[1121]  M. Lyte,et al.  Evidence for PMAT- and OCT-like biogenic amine transporters in a probiotic strain of Lactobacillus: Implications for interkingdom communication within the microbiota-gut-brain axis , 2018, PloS one.

[1122]  F. Helmchen,et al.  Resting Microglial Cells Are Highly Dynamic Surveillants of Brain Parenchyma in Vivo , 2005, Science.

[1123]  C. Hill,et al.  The interaction between bacteria and bile. , 2005, FEMS microbiology reviews.

[1124]  E. Cereda,et al.  Probiotics and prebiotic fiber for constipation associated with Parkinson disease , 2016, Neurology.

[1125]  Martin J. Blaser,et al.  Antibiotics, birth mode, and diet shape microbiome maturation during early life , 2016, Science Translational Medicine.

[1126]  W. Kop,et al.  Inflammatory markers and negative mood symptoms following exercise withdrawal , 2008, Brain, Behavior, and Immunity.

[1127]  D. Häussinger,et al.  Bile acids PKA‐dependently induce a switch of the IL‐10/IL‐12 ratio and reduce proinflammatory capability of human macrophages , 2013, Journal of leukocyte biology.

[1128]  H. Smidt,et al.  Association between Psychosocial Stress and Fecal Microbiota in Pregnant Women , 2019, Scientific Reports.

[1129]  M. Lyte The role of microbial endocrinology in infectious disease. , 1993, The Journal of endocrinology.

[1130]  A. Baccarelli,et al.  Maternal gut and fetal brain connection: Increased anxiety and reduced social interactions in Wistar rat offspring following peri-conceptional antibiotic exposure , 2016, Progress in Neuro-Psychopharmacology and Biological Psychiatry.

[1131]  Jesse R. Zaneveld,et al.  Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences , 2013, Nature Biotechnology.

[1132]  T. Dinan,et al.  The vagus nerve modulates BDNF expression and neurogenesis in the hippocampus , 2018, European Neuropsychopharmacology.

[1133]  J. Walters,et al.  Guts and Gall: Bile Acids in Regulation of Intestinal Epithelial Function in Health and Disease. , 2018, Physiological reviews.

[1134]  G. Rossi,et al.  SLAB51 Probiotic Formulation Activates SIRT1 Pathway Promoting Antioxidant and Neuroprotective Effects in an AD Mouse Model , 2018, Molecular Neurobiology.

[1135]  Edoardo Pasolli,et al.  Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle , 2019, Cell.

[1136]  Brigitta B. Gundersen,et al.  Effects of the histone deacetylase inhibitor sodium butyrate in models of depression and anxiety , 2009, Neuropharmacology.

[1137]  R. Lignell,et al.  THEORETICAL MODELS FOR THE CONTROL OF BACTERIAL GROWTH RATE, ABUNDANCE, DIVERSITY AND CARBON DEMAND , 1997 .

[1138]  B. McEwen,et al.  Stress Effects on Neuronal Structure: Hippocampus, Amygdala, and Prefrontal Cortex , 2016, Neuropsychopharmacology.

[1139]  T. Dinan,et al.  A Microbial Drugstore for Motility. , 2018, Cell host & microbe.

[1140]  J. Holst,et al.  Intake of Lactobacillus reuteri Improves Incretin and Insulin Secretion in Glucose-Tolerant Humans: A Proof of Concept , 2015, Diabetes Care.

[1141]  Jing Sun,et al.  Clostridium butyricum Attenuates Chronic Unpredictable Mild Stress-Induced Depressive-Like Behavior in Mice via the Gut-Brain Axis. , 2018, Journal of agricultural and food chemistry.

[1142]  W. Oldendorf Uptake of Radiolabeled Essential Amino Acids by Brain Following Arterial Injection , 1971, Proceedings of the Society for Experimental Biology and Medicine. Society for Experimental Biology and Medicine.

[1143]  G. Tetz,et al.  Bacteriophage infections of microbiota can lead to leaky gut in an experimental rodent model , 2016, Gut Pathogens.

[1144]  G. De Palma,et al.  The microbiota-gut-brain axis in functional gastrointestinal disorders , 2014, Gut microbes.

[1145]  M. Millan Descending control of pain , 2002, Progress in Neurobiology.

[1146]  A. Nadjar,et al.  Microglia in neuronal plasticity: Influence of stress , 2015, Neuropharmacology.

[1147]  E. Laconi,et al.  Caloric restriction promotes rapid expansion and long-lasting increase of Lactobacillus in the rat fecal microbiota , 2018, Gut microbes.

[1148]  D. Manahan‐Vaughan,et al.  Persistent deficits in hippocampal synaptic plasticity accompany losses of hippocampus-dependent memory in a rodent model of psychosis , 2013, Front. Integr. Neurosci..

[1149]  J. Nicoli,et al.  Absence of gut microbiota influences lipopolysaccharide-induced behavioral changes in mice , 2016, Behavioural Brain Research.

[1150]  R. Mackie,et al.  Developmental microbial ecology of the neonatal gastrointestinal tract. , 1999, The American journal of clinical nutrition.

[1151]  Sébastien Matamoros,et al.  Intestinal permeability, gut-bacterial dysbiosis, and behavioral markers of alcohol-dependence severity , 2014, Proceedings of the National Academy of Sciences.

[1152]  M. Hattori,et al.  Bifidobacterium-Rich Fecal Donor May Be a Positive Predictor for Successful Fecal Microbiota Transplantation in Patients with Irritable Bowel Syndrome , 2017, Digestion.

[1153]  V. Théodorou,et al.  Maternal high-fat diet and early life stress differentially modulate spine density and dendritic morphology in the medial prefrontal cortex of juvenile and adult rats , 2017, Brain Structure and Function.

[1154]  Shizuo Akira,et al.  The roles of TLRs, RLRs and NLRs in pathogen recognition. , 2009, International immunology.

[1155]  Jennifer S. Labus,et al.  Brain Structure and Response to Emotional Stimuli as Related to Gut Microbial Profiles in Healthy Women , 2017, Psychosomatic medicine.

[1156]  W. Yeo,et al.  A meta-analysis of the use of probiotics to alleviate depressive symptoms. , 2018, Journal of affective disorders.

[1157]  P. Mortensen,et al.  Kinetic studies on the metabolism of short-chain fatty acids and glucose by isolated rat colonocytes. , 1994, Gastroenterology.

[1158]  C. Lay,et al.  Effect of Synbiotic on the Gut Microbiota of Cesarean Delivered Infants: A Randomized, Double-blind, Multicenter Study. , 2017, Journal of pediatric gastroenterology and nutrition.

[1159]  Ahmad Esmaillzadeh,et al.  Clinical and metabolic response to probiotic administration in patients with major depressive disorder: A randomized, double-blind, placebo-controlled trial. , 2016, Nutrition.

[1160]  M. Mcmurdo,et al.  Characterization of Bacterial Communities in Feces from Healthy Elderly Volunteers and Hospitalized Elderly Patients by Using Real-Time PCR and Effects of Antibiotic Treatment on the Fecal Microbiota , 2004, Applied and Environmental Microbiology.

[1161]  I. Amit,et al.  Microbiota Diurnal Rhythmicity Programs Host Transcriptome Oscillations , 2016, Cell.

[1162]  Werner Poewe,et al.  Neurological Outcome of Septic Cardioembolic Stroke After Infective Endocarditis , 2006, Stroke.

[1163]  Zhiguo Yuan,et al.  Antidepressant fluoxetine induces multiple antibiotics resistance in Escherichia coli via ROS-mediated mutagenesis. , 2018, Environment international.

[1164]  Carlo C Maley,et al.  Is eating behavior manipulated by the gastrointestinal microbiota? Evolutionary pressures and potential mechanisms , 2014, BioEssays : news and reviews in molecular, cellular and developmental biology.

[1165]  G. Macfarlane,et al.  Role of intestinal bacteria in nutrient metabolism. , 1997, JPEN. Journal of parenteral and enteral nutrition.

[1166]  Sang-Uk Seo,et al.  Role of the gut microbiota in immunity and inflammatory disease , 2013, Nature Reviews Immunology.

[1167]  A. Burns,et al.  Building a brain in the gut: development of the enteric nervous system , 2013, Clinical genetics.

[1168]  F. Sutterwala,et al.  The tiny conductor: immune regulation via commensal organisms. , 2008, Cell host & microbe.

[1169]  B. Stevens,et al.  Microglia Function in Central Nervous System Development and Plasticity. , 2015, Cold Spring Harbor perspectives in biology.

[1170]  A. Zinsmeister,et al.  A randomized controlled trial of a probiotic, VSL#3, on gut transit and symptoms in diarrhoea‐predominant irritable bowel syndrome , 2003, Alimentary pharmacology & therapeutics.

[1171]  B. Durupınar,et al.  [Investigation of antibacterial activity of sertralin]. , 2009, Mikrobiyoloji bulteni.

[1172]  K. Theis,et al.  Host Biology in Light of the Microbiome: Ten Principles of Holobionts and Hologenomes , 2015, PLoS biology.

[1173]  K. Kaliannan,et al.  Maternal omega-3 fatty acids regulate offspring obesity through persistent modulation of gut microbiota , 2018, Microbiome.

[1174]  Stephen Maren,et al.  Stress and Fear Extinction , 2016, Neuropsychopharmacology.

[1175]  E. Koonin,et al.  Evolution of cell-cell signaling in animals: did late horizontal gene transfer from bacteria have a role? , 2004, Trends in genetics : TIG.

[1176]  M. Fornaro,et al.  Hippocampal plasticity after a vagus nerve injury in the rat , 2012, Neural regeneration research.

[1177]  Å. Keita,et al.  The intestinal barrier and its regulation by neuroimmune factors , 2010, Neurogastroenterology and motility : the official journal of the European Gastrointestinal Motility Society.

[1178]  F. Zadjali,et al.  Use of Germ-Free Animal Models in Microbiota-Related Research. , 2015, Journal of microbiology and biotechnology.

[1179]  B. Lennox,et al.  Prebiotic attenuation of olanzapine-induced weight gain in rats: analysis of central and peripheral biomarkers and gut microbiota , 2018, Translational Psychiatry.

[1180]  G. Bifulco,et al.  The Bile Acid Receptor GPBAR-1 (TGR5) Modulates Integrity of Intestinal Barrier and Immune Response to Experimental Colitis , 2011, PloS one.

[1181]  C. von Mering,et al.  Like Will to Like: Abundances of Closely Related Species Can Predict Susceptibility to Intestinal Colonization by Pathogenic and Commensal Bacteria , 2010, PLoS pathogens.

[1182]  P. Brun,et al.  Toll like receptor-2 regulates production of glial-derived neurotrophic factors in murine intestinal smooth muscle cells , 2015, Molecular and Cellular Neuroscience.

[1183]  P. Okhuysen,et al.  A Rapid and Specific Method for the Detection of Indole in Complex Biological Samples , 2015, Applied and Environmental Microbiology.

[1184]  J. Molnár,et al.  Mechanism of action of tricyclic drugs on Escherichia coli and Yersinia enterocolitica plasmid maintenance and replication. , 1992, Anticancer research.

[1185]  Luis Carrasco,et al.  Fungal Enolase, β-Tubulin, and Chitin Are Detected in Brain Tissue from Alzheimer’s Disease Patients , 2016, Front. Microbiol..

[1186]  Bin Wang,et al.  Adaptive strategies of the candidate probiotic E. coli Nissle in the mammalian gut , 2018, bioRxiv.

[1187]  O. Franco,et al.  The microbiota: an exercise immunology perspective. , 2015, Exercise immunology review.

[1188]  G. P. Smith,et al.  A method for selective section of vagal afferent or efferent axons in the rat. , 1994, The American journal of physiology.

[1189]  Robert A Edwards,et al.  Discovery of an expansive bacteriophage family that includes the most abundant viruses from the human gut , 2017, Nature Microbiology.

[1190]  T. Dinan,et al.  Gut microbiota, obesity and diabetes , 2016, Postgraduate Medical Journal.

[1191]  Chang H. Kim,et al.  Gut Microbiota-Derived Short-Chain Fatty Acids, T Cells, and Inflammation , 2014, Immune network.

[1192]  M. Azad,et al.  Infant antibiotic exposure and the development of childhood overweight and central adiposity , 2014, International Journal of Obesity.

[1193]  E. Tsavkelova,et al.  Detection of neurotransmitter amines in microorganisms with the use of high-performance liquid chromatography. , 2000, Doklady biochemistry : proceedings of the Academy of Sciences of the USSR, Biochemistry section.

[1194]  G. Frisoni,et al.  Reduction of Abeta amyloid pathology in APPPS1 transgenic mice in the absence of gut microbiota , 2017, Scientific Reports.

[1195]  Luigi Ferrucci,et al.  Mediterranean diet and mobility decline in older persons , 2011, Experimental Gerontology.

[1196]  Chenhong Zhang,et al.  Gut bacteria selectively promoted by dietary fibers alleviate type 2 diabetes , 2018, Science.

[1197]  M. Surette,et al.  Probiotic Bifidobacterium longum NCC3001 Reduces Depression Scores and Alters Brain Activity: A Pilot Study in Patients With Irritable Bowel Syndrome. , 2017, Gastroenterology.

[1198]  Johanna Louise Reichert,et al.  Probiotics drive gut microbiome triggering emotional brain signatures , 2018, Gut microbes.

[1199]  Liquan Huang,et al.  Taste bud homeostasis in health, disease, and aging. , 2014, Chemical senses.

[1200]  Liquan Huang,et al.  Human taste: peripheral anatomy, taste transduction, and coding. , 2006, Advances in oto-rhino-laryngology.

[1201]  S. Prakash,et al.  Changes in bile acids, FGF-19 and sterol absorption in response to bile salt hydrolase active L. reuteri NCIMB 30242 , 2015, Gut microbes.

[1202]  John D. Van Horn,et al.  The structural, connectomic and network covariance of the human brain , 2013, NeuroImage.

[1203]  A. M. Habib,et al.  Glucose Sensing in L Cells: A Primary Cell Study , 2008, Cell metabolism.

[1204]  P. Patterson Immune involvement in schizophrenia and autism: Etiology, pathology and animal models , 2009, Behavioural Brain Research.

[1205]  Lawrence A. David,et al.  Diet rapidly and reproducibly alters the human gut microbiome , 2013, Nature.

[1206]  T. Bale,et al.  Stress during pregnancy alters temporal and spatial dynamics of the maternal and offspring microbiome in a sex-specific manner , 2017, Scientific Reports.

[1207]  L. Debarbieux,et al.  “I will survive”: A tale of bacteriophage-bacteria coevolution in the gut , 2018, Gut microbes.

[1208]  M. J. Saad,et al.  Gut microbiota composition and its effects on obesity and insulin resistance , 2014, Current opinion in clinical nutrition and metabolic care.

[1209]  Kathryn Moynihan Ramsey,et al.  Circadian Rhythms and Metabolic Syndrome: From Experimental Genetics to Human Disease , 2010, Circulation research.

[1210]  Xin-hua Yang,et al.  Resveratrol ameliorates chronic unpredictable mild stress-induced depression-like behavior: involvement of the HPA axis, inflammatory markers, BDNF, and Wnt/β-catenin pathway in rats , 2017, Neuropsychiatric disease and treatment.

[1211]  A. Ericsson,et al.  Microbial modulation of behavior and stress responses in zebrafish larvae , 2016, Behavioural Brain Research.

[1212]  Rashmi Chandra,et al.  An Enteroendocrine Cell – Enteric Glia Connection Revealed by 3D Electron Microscopy , 2014, PloS one.

[1213]  B. Bonaz,et al.  Brain-gut interactions in inflammatory bowel disease. , 2013, Gastroenterology.

[1214]  Lee M. Kaplan,et al.  Conserved Shifts in the Gut Microbiota Due to Gastric Bypass Reduce Host Weight and Adiposity , 2013, Science Translational Medicine.

[1215]  James T. Morton,et al.  Parkinson's disease and Parkinson's disease medications have distinct signatures of the gut microbiome , 2017, Movement disorders : official journal of the Movement Disorder Society.

[1216]  A. Harkin Muscling in on depression. , 2014, The New England journal of medicine.

[1217]  Eric G. Pamer,et al.  Commensal microbiota affects ischemic stroke outcome by regulating intestinal γδT cells , 2016, Nature Medicine.

[1218]  V. Ganapathy,et al.  Functional Identification of SLC5A8, a Tumor Suppressor Down-regulated in Colon Cancer, as a Na+-coupled Transporter for Short-chain Fatty Acids* , 2004, Journal of Biological Chemistry.

[1219]  Liping Zhao,et al.  A human stool-derived Bilophila wadsworthia strain caused systemic inflammation in specific-pathogen-free mice , 2017, Gut Pathogens.

[1220]  Chuangzhao Qiu,et al.  Ketogenic diet poses a significant effect on imbalanced gut microbiota in infants with refractory epilepsy , 2017, World journal of gastroenterology.

[1221]  M. Lyte Microbial Endocrinology in the Microbiome-Gut-Brain Axis: How Bacterial Production and Utilization of Neurochemicals Influence Behavior , 2013, PLoS pathogens.

[1222]  L. Bossi,et al.  Inducible prophages contribute to Salmonella virulence in mice , 1999, Molecular microbiology.

[1223]  F. Bäckhed,et al.  Microbiota-Generated Metabolites Promote Metabolic Benefits via Gut-Brain Neural Circuits , 2014, Cell.

[1224]  M. Young,et al.  The Human Gut Phage Community and Its Implications for Health and Disease , 2017, Viruses.

[1225]  A. Alexandrov,et al.  Adherence to a Mediterranean Diet and Prediction of Incident Stroke , 2015, Stroke.

[1226]  P. O’Toole,et al.  γ‐Aminobutyric acid production by culturable bacteria from the human intestine , 2012, Journal of applied microbiology.

[1227]  V. Théodorou,et al.  Prevention of gut leakiness by a probiotic treatment leads to attenuated HPA response to an acute psychological stress in rats , 2012, Psychoneuroendocrinology.

[1228]  E. Mitchell,et al.  Effect of Lactobacillus rhamnosus HN001 in Pregnancy on Postpartum Symptoms of Depression and Anxiety: A Randomised Double-blind Placebo-controlled Trial , 2017, EBioMedicine.

[1229]  T. Dinan,et al.  Bifidobacteria modulate cognitive processes in an anxious mouse strain , 2015, Behavioural Brain Research.

[1230]  P. Hemarajata,et al.  Histamine Derived from Probiotic Lactobacillus reuteri Suppresses TNF via Modulation of PKA and ERK Signaling , 2012, PloS one.

[1231]  W. Tao,et al.  Ingestion of Lactobacillus strain reduces anxiety and improves cognitive function in the hyperammonemia rat , 2014 .

[1232]  M. Kamm,et al.  Faecal Microbiota Transplantation for Inflammatory Bowel Disease: A Systematic Review and Meta-analysis , 2017, Journal of Crohn's & colitis.

[1233]  E. Castro-Nallar,et al.  Composition, taxonomy and functional diversity of the oropharynx microbiome in individuals with schizophrenia and controls , 2015, PeerJ.

[1234]  M. Swain,et al.  Environmental stress-induced gastrointestinal permeability is mediated by endogenous glucocorticoids in the rat. , 2000, Gastroenterology.

[1235]  R. Xavier,et al.  CARD9 impacts colitis by altering gut microbiota metabolism of tryptophan into aryl hydrocarbon receptor ligands , 2016, Nature Medicine.

[1236]  H. Gerstein,et al.  The role of Homer1c in metabotropic glutamate receptor‐dependent long‐term potentiation , 2014, Hippocampus.

[1237]  Michael L. Wilson,et al.  Social behavior shapes the chimpanzee pan-microbiome , 2016, Science Advances.

[1238]  C. Mains,et al.  Cell death after traumatic brain injury: Detrimental role of anoikis in healing. , 2018, Clinica chimica acta; international journal of clinical chemistry.

[1239]  Sean M. Kearney,et al.  Microbial Symbionts Accelerate Wound Healing via the Neuropeptide Hormone Oxytocin , 2013, PloS one.

[1240]  C. Ohland,et al.  Effects of Lactobacillus helveticus on murine behavior are dependent on diet and genotype and correlate with alterations in the gut microbiome , 2013, Psychoneuroendocrinology.

[1241]  A. M. Habib,et al.  Short-Chain Fatty Acids Stimulate Glucagon-Like Peptide-1 Secretion via the G-Protein–Coupled Receptor FFAR2 , 2012, Diabetes.

[1242]  Alexander N. Levy,et al.  Insights into the role of fecal microbiota transplantation for the treatment of inflammatory bowel disease , 2019, Therapeutic advances in gastroenterology.

[1243]  T. Baram,et al.  Cellular and molecular mechanisms of hippocampal activation by acute stress are age-dependent , 2006, Molecular Psychiatry.

[1244]  A. Kraneveld,et al.  Food allergy and food‐based therapies in neurodevelopmental disorders , 2014, Pediatric allergy and immunology : official publication of the European Society of Pediatric Allergy and Immunology.

[1245]  V. A. Shishov,et al.  Amine neuromediators, their precursors, and oxidation products in the culture of Escherichia coli K-12 , 2009, Applied Biochemistry and Microbiology.

[1246]  Kristl Vonck,et al.  The antidepressant mechanism of action of vagus nerve stimulation: Evidence from preclinical studies , 2015, Neuroscience & Biobehavioral Reviews.

[1247]  Melvin G McInnis,et al.  Interaction Between Atypical Antipsychotics and the Gut Microbiome in a Bipolar Disease Cohort , 2017, Pharmacotherapy.

[1248]  T. Dinan,et al.  Review article: probiotics for the treatment of irritable bowel syndrome – focus on lactic acid bacteria , 2012, Alimentary pharmacology & therapeutics.

[1249]  Jin-zhong Xiao,et al.  Heat-killed Lactobacillus helveticus strain MCC1848 confers resilience to anxiety or depression-like symptoms caused by subchronic social defeat stress in mice , 2019, Bioscience, biotechnology, and biochemistry.

[1250]  G. Farrugia,et al.  Human-derived gut microbiota modulates colonic secretion in mice by regulating 5-HT3 receptor expression via acetate production. , 2017, American journal of physiology. Gastrointestinal and liver physiology.

[1251]  B. Liu,et al.  Starke Belege: Parkinson könnte im Verdauungstrakt beginnen , 2017 .

[1252]  J. Cryan,et al.  Microbe-host interactions: Influence of the gut microbiota on the enteric nervous system. , 2016, Developmental biology.

[1253]  Aleksandar Milosavljevic,et al.  Gastrointestinal microbiome signatures of pediatric patients with irritable bowel syndrome. , 2011, Gastroenterology.

[1254]  T. Dinan,et al.  Gut Microbiota: The Conductor in the Orchestra of Immune-Neuroendocrine Communication. , 2015, Clinical therapeutics.

[1255]  Barbara A. Bailey,et al.  Bacteriophage Transcytosis Provides a Mechanism To Cross Epithelial Cell Layers , 2017, mBio.

[1256]  G. Spalletta,et al.  Schizophrenia and bipolar disorder: The road from similarities and clinical heterogeneity to neurobiological types. , 2015, Clinica chimica acta; international journal of clinical chemistry.

[1257]  Y. Benno,et al.  Impact of Intestinal Microbiota on Intestinal Luminal Metabolome , 2012, Scientific Reports.

[1258]  Ron Milo,et al.  Are We Really Vastly Outnumbered? Revisiting the Ratio of Bacterial to Host Cells in Humans , 2016, Cell.

[1259]  M. Hornef,et al.  Innate immune signalling at the intestinal epithelium in homeostasis and disease , 2012, EMBO reports.

[1260]  T. Dinan,et al.  Growing up in a Bubble: Using Germ-Free Animals to Assess the Influence of the Gut Microbiota on Brain and Behavior , 2016, The international journal of neuropsychopharmacology.

[1261]  F. Bäckhed,et al.  The gut microbiota reduces leptin sensitivity and the expression of the obesity-suppressing neuropeptides proglucagon (Gcg) and brain-derived neurotrophic factor (Bdnf) in the central nervous system. , 2013, Endocrinology.

[1262]  J. Eisen,et al.  The enteric nervous system promotes intestinal health by constraining microbiota composition , 2017, PLoS biology.

[1263]  Forest Rohwer,et al.  Viruses in the fecal microbiota of monozygotic twins and their mothers , 2010, Nature.

[1264]  J. Bienenstock,et al.  Inhibitory effects of Lactobacillus reuteri on visceral pain induced by colorectal distension in Sprague-Dawley rats , 2005, Gut.

[1265]  J. Clemente,et al.  Human gut microbiome viewed across age and geography , 2012, Nature.

[1266]  Colin Hill,et al.  Viromes of one year old infants reveal the impact of birth mode on microbiome diversity , 2018, PeerJ.

[1267]  D. Russell The enzymes, regulation, and genetics of bile acid synthesis. , 2003, Annual review of biochemistry.

[1268]  M. Morris,et al.  Cafeteria diet and probiotic therapy: cross talk among memory, neuroplasticity, serotonin receptors and gut microbiota in the rat , 2018, Molecular Psychiatry.

[1269]  F. Ryan,et al.  Long-term colonisation with donor bacteriophages following successful faecal microbial transplantation , 2018, Microbiome.

[1270]  M. Messaoudi,et al.  Assessment of psychotropic-like properties of a probiotic formulation (Lactobacillus helveticus R0052 and Bifidobacterium longum R0175) in rats and human subjects , 2010, British Journal of Nutrition.

[1271]  M. Furuse,et al.  Gut microbiota of mice putatively modifies amino acid metabolism in the host brain. , 2017, The British journal of nutrition.

[1272]  D. Brenner,et al.  Modulation of the intestinal bile acid/farnesoid X receptor/fibroblast growth factor 15 axis improves alcoholic liver disease in mice , 2018, Hepatology.

[1273]  J. Rucklidge,et al.  A double-blind, randomized, placebo-controlled trial of Lactobacillus helveticus and Bifidobacterium longum for the symptoms of depression , 2017, The Australian and New Zealand journal of psychiatry.

[1274]  Ruixue Huang,et al.  Effect of Probiotics on Depression: A Systematic Review and Meta-Analysis of Randomized Controlled Trials , 2016, Nutrients.

[1275]  Xiling Shen,et al.  A gut-brain neural circuit for nutrient sensory transduction , 2018, Science.

[1276]  C. Hill,et al.  Bacteriophages of the Human Gut: The "Known Unknown" of the Microbiome. , 2019, Cell host & microbe.

[1277]  W. Khan,et al.  Diverse Effects of Gut-Derived Serotonin in Intestinal Inflammation. , 2017, ACS chemical neuroscience.

[1278]  T. Hare,et al.  The Adolescent Brain , 2008, Annals of the New York Academy of Sciences.

[1279]  T. Dinan,et al.  A gut (microbiome) feeling about the brain , 2016, Current opinion in gastroenterology.

[1280]  S. Maji,et al.  Lipopolysaccharide from Gut Microbiota Modulates α-Synuclein Aggregation and Alters Its Biological Function. , 2019, ACS chemical neuroscience.

[1281]  Richard A. Flavell,et al.  NLRP6 Inflammasome Regulates Colonic Microbial Ecology and Risk for Colitis , 2011, Cell.

[1282]  M. Gershon Development of the Enteric Nervous System: A Genetic Guide to the Perplexed. , 2018, Gastroenterology.

[1283]  F. Dickerson,et al.  Effect of probiotic supplementation on schizophrenia symptoms and association with gastrointestinal functioning: a randomized, placebo-controlled trial. , 2014, The primary care companion for CNS disorders.

[1284]  Hegstrand Lr,et al.  Variations of brain histamine levels in germ-free and nephrectomized rats. , 1986 .

[1285]  Martin Ingelsson,et al.  The Alzheimer's Disease-Associated Amyloid \(\beta\)-Protein Is an Antimicrobial Peptide , 2010 .

[1286]  Javier Santos,et al.  A Review of Microbiota and Irritable Bowel Syndrome: Future in Therapies , 2018, Advances in Therapy.

[1287]  S. Lynch The Lung Microbiome and Airway Disease. , 2016, Annals of the American Thoracic Society.

[1288]  R. Lin,et al.  Cloning and genetic characterization of an evolutionarily conserved human olfactory receptor that is differentially expressed across species. , 2001, Gene.

[1289]  J. Craig,et al.  A new syndrome: progressive familial infantile cerebral dysfunction associated with an unusual urinary substance. , 1954, Pediatrics.

[1290]  G. Tsujimoto,et al.  Free fatty acids regulate gut incretin glucagon-like peptide-1 secretion through GPR120 , 2005, Nature Medicine.

[1291]  K. Chung,et al.  Chapter 27 – Cytokines , 2009 .

[1292]  L. Kaczmarek,et al.  Functional anatomy of neural circuits regulating fear and extinction , 2012, Proceedings of the National Academy of Sciences.

[1293]  Xiaomin Liu,et al.  Expression of glucagon-like peptide-1 in the taste buds of rat circumvallate papillae. , 2008, Acta histochemica.

[1294]  M. Bes-Rastrollo,et al.  Mediterranean diet and depression , 2006, Public Health Nutrition.

[1295]  Arthur Brady,et al.  Strains, functions and dynamics in the expanded Human Microbiome Project , 2017, Nature.

[1296]  S. Ikeda,et al.  β-Hydroxybutyrate Modulates N-Type Calcium Channels in Rat Sympathetic Neurons by Acting as an Agonist for the G-Protein-Coupled Receptor FFA3 , 2013, The Journal of Neuroscience.

[1297]  K. Lai,et al.  Bisphenol A alters gut microbiome: Comparative metagenomics analysis. , 2016, Environmental pollution.

[1298]  Kyle Bittinger,et al.  Optimizing methods and dodging pitfalls in microbiome research , 2017, Microbiome.

[1299]  S. Abramson,et al.  Review: Microbiome in Inflammatory Arthritis and Human Rheumatic Diseases , 2016, Arthritis & rheumatology.

[1300]  M. Sears,et al.  Gut microbiota of healthy Canadian infants: profiles by mode of delivery and infant diet at 4 months , 2013, Canadian Medical Association Journal.

[1301]  Hongwei Zhou,et al.  Fructooligosaccharide (FOS) and Galactooligosaccharide (GOS) Increase Bifidobacterium but Reduce Butyrate Producing Bacteria with Adverse Glycemic Metabolism in healthy young population , 2017, Scientific Reports.

[1302]  Thomas Lengauer,et al.  Exposure to the gut microbiota drives distinct methylome and transcriptome changes in intestinal epithelial cells during postnatal development , 2018, Genome Medicine.

[1303]  M. V. van Zelm,et al.  Review article: short chain fatty acids as potential therapeutic agents in human gastrointestinal and inflammatory disorders , 2018, Alimentary pharmacology & therapeutics.

[1304]  S. Bourdoulous,et al.  A journey into the brain: insight into how bacterial pathogens cross blood–brain barriers , 2017, Nature Reviews Microbiology.

[1305]  M. Nieuwdorp,et al.  Fecal microbiota transplantation in metabolic syndrome: History, present and future , 2017, Gut microbes.

[1306]  P. Vandamme,et al.  Ecotoxicology inside the gut: impact of heavy metals on the mouse microbiome , 2013, BMC Pharmacology and Toxicology.

[1307]  R. Godbout,et al.  Lactobacillus helveticus and Bifidobacterium longum taken in combination reduce the apoptosis propensity in the limbic system after myocardial infarction in a rat model , 2009, British Journal of Nutrition.

[1308]  D. Cain,et al.  Effects of the enteric bacterial metabolic product propionic acid on object-directed behavior, social behavior, cognition, and neuroinflammation in adolescent rats: Relevance to autism spectrum disorder , 2011, Behavioural Brain Research.

[1309]  W. Silen,et al.  Fecal enema as an adjunct in the treatment of pseudomembranous enterocolitis. , 1958, Surgery.

[1310]  T. Dinan,et al.  Differential effects of psychotropic drugs on microbiome composition and gastrointestinal function , 2018, Psychopharmacology.

[1311]  B. Olde,et al.  Identification of a free fatty acid receptor, FFA2R, expressed on leukocytes and activated by short-chain fatty acids. , 2003, Biochemical and biophysical research communications.

[1312]  S. Cucchiara,et al.  Gut-associated bacterial microbiota in paediatric patients with inflammatory bowel disease , 2006, Gut.

[1313]  P. Déchelotte,et al.  The pathogenic potential of Pseudomonas fluorescens MFN1032 on enterocytes can be modulated by serotonin, substance P and epinephrine , 2015, Archives of Microbiology.

[1314]  John H. Gilmore,et al.  Infant Gut Microbiome Associated With Cognitive Development , 2018, Biological Psychiatry.

[1315]  V. Pachnis,et al.  Emerging roles of gut microbiota and the immune system in the development of the enteric nervous system. , 2015, The Journal of clinical investigation.

[1316]  L. Pesti,et al.  The gnotobiotic animal as a tool in the study of host microbial relationships. , 1971, Bacteriological reviews.

[1317]  J. Keelan,et al.  A Critical Review of the Bacterial Baptism Hypothesis and the Impact of Cesarean Delivery on the Infant Microbiome , 2018, Front. Med..

[1318]  L. Morelli,et al.  Mode of delivery affects the bacterial community in the newborn gut. , 2010, Early human development.

[1319]  J. Huizinga,et al.  Bifidobacterium longum NCC3001 inhibits AH neuron excitability , 2013, Neurogastroenterology and motility : the official journal of the European Gastrointestinal Motility Society.

[1320]  A. Clooney,et al.  A clinician's guide to microbiome analysis , 2017, Nature Reviews Gastroenterology &Hepatology.

[1321]  F. Jacob,et al.  Conjugation and genetic recombination in Escherichia coli K-12. , 1956, Cold Spring Harbor symposia on quantitative biology.

[1322]  D. Bach,et al.  Blocking human fear memory with the matrix metalloproteinase inhibitor doxycycline , 2017, Molecular Psychiatry.

[1323]  R. G. Kirk "Life in a Germ-Free World": Isolating Life from the Laboratory Animal to the Bubble Boy , 2012, Bulletin of the history of medicine.

[1324]  Y. Sumi,et al.  Vitamin B-6 deficiency in germfree rats. , 1977, The Journal of nutrition.

[1325]  Alan L. Hutchison,et al.  Effects of diurnal variation of gut microbes and high-fat feeding on host circadian clock function and metabolism. , 2015, Cell host & microbe.

[1326]  T. Bale,et al.  The maternal vaginal microbiome partially mediates the effects of prenatal stress on offspring gut and hypothalamus , 2018, Nature Neuroscience.

[1327]  M. Sears,et al.  Infant gut microbiota and the hygiene hypothesis of allergic disease: impact of household pets and siblings on microbiota composition and diversity , 2013, Allergy, Asthma & Clinical Immunology.

[1328]  P. Widimsky,et al.  Acute stroke therapy: A review. , 2017, Trends in cardiovascular medicine.

[1329]  T. Hökfelt,et al.  Autoantibodies against α-MSH, ACTH, and LHRH in anorexia and bulimia nervosa patients , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[1330]  L. Hooper,et al.  Innate immune responses to commensal bacteria in the gut epithelium. , 2008, Journal of pediatric gastroenterology and nutrition.

[1331]  J. Turna,et al.  “WHAT'S BUGGING THE GUT IN OCD?” A REVIEW OF THE GUT MICROBIOME IN OBSESSIVE–COMPULSIVE DISORDER , 2016, Depression and anxiety.

[1332]  N M Luscombe,et al.  What is Bioinformatics? A Proposed Definition and Overview of the Field , 2001, Methods of Information in Medicine.

[1333]  S. Duncan,et al.  Metabolism of Linoleic Acid by Human Gut Bacteria: Different Routes for Biosynthesis of Conjugated Linoleic Acid , 2007, Journal of bacteriology.

[1334]  J. Miklossy,et al.  Alzheimer's disease—a spirochetosis? , 1993, Neuroreport.

[1335]  D. Romagnolo,et al.  Mediterranean Diet and Prevention of Chronic Diseases , 2017, Nutrition today.

[1336]  U. Namgung,et al.  Hippocampal activation of 5‐HT1B receptors and BDNF production by vagus nerve stimulation in rats under chronic restraint stress , 2019, The European journal of neuroscience.

[1337]  Katherine E. Zink,et al.  Calling all hosts: Bacterial communication in situ. , 2017, Chem.

[1338]  Aileen I. Pogue,et al.  Pathogenic microbes, the microbiome, and Alzheimer’s disease (AD) , 2014, Front. Aging Neurosci..

[1339]  S. Dastmalchi,et al.  Non-specific translocation of peptide-displaying bacteriophage particles across the gastrointestinal barrier. , 2008, European journal of pharmaceutics and biopharmaceutics : official journal of Arbeitsgemeinschaft fur Pharmazeutische Verfahrenstechnik e.V.

[1340]  Rick Richardson,et al.  Effects of D-Cycloserine on Extinction: Translation From Preclinical to Clinical Work , 2006, Biological Psychiatry.

[1341]  Karunesh Ganguly,et al.  Activity-Dependent Neural Plasticity from Bench to Bedside , 2013, Neuron.

[1342]  J. Gilthorpe,et al.  Reactivated herpes simplex infection increases the risk of Alzheimer's disease , 2015, Alzheimer's & Dementia.

[1343]  G. Quirk,et al.  Neuronal signalling of fear memory , 2004, Nature Reviews Neuroscience.

[1344]  P. Illés,et al.  VIP enhances both pre‐ and postsynaptic GABAergic transmission to hippocampal interneurones leading to increased excitatory synaptic transmission to CA1 pyramidal cells , 2004, British journal of pharmacology.

[1345]  A. Schwiertz,et al.  Microbiota and SCFA in Lean and Overweight Healthy Subjects , 2010, Obesity.

[1346]  K. Chakravarthy,et al.  Review of the Uses of Vagal Nerve Stimulation in Chronic Pain Management , 2015, Current Pain and Headache Reports.

[1347]  Ting Wang,et al.  The gut microbiota as an environmental factor that regulates fat storage. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[1348]  P. de Vos,et al.  Aged Gut Microbiota Contributes to Systemical Inflammaging after Transfer to Germ-Free Mice , 2017, Front. Immunol..

[1349]  T. Matsuzawa,et al.  Molecular analyses of the intestinal microbiota of chimpanzees in the wild and in captivity , 2007, American journal of primatology.

[1350]  W. Wade,et al.  The oral microbiome – an update for oral healthcare professionals , 2016, BDJ.

[1351]  S. Larson Lipopolysaccharide and interleukin-1β decrease sucrose intake but do not affect expression of place preference in rats , 2006, Pharmacology Biochemistry and Behavior.

[1352]  Steven F. Maier,et al.  Mycobacterium vaccae immunization protects aged rats from surgery-elicited neuroinflammation and cognitive dysfunction , 2018, Neurobiology of Aging.

[1353]  Marcus J. Claesson,et al.  Composition, variability, and temporal stability of the intestinal microbiota of the elderly , 2010, Proceedings of the National Academy of Sciences.

[1354]  H. Flint,et al.  Acetate Utilization and Butyryl Coenzyme A (CoA):Acetate-CoA Transferase in Butyrate-Producing Bacteria from the Human Large Intestine , 2002, Applied and Environmental Microbiology.

[1355]  Tim D Spector,et al.  Omega-3 fatty acids correlate with gut microbiome diversity and production of N-carbamylglutamate in middle aged and elderly women , 2017, Scientific Reports.

[1356]  G. Frisoni,et al.  Association of brain amyloidosis with pro-inflammatory gut bacterial taxa and peripheral inflammation markers in cognitively impaired elderly , 2017, Neurobiology of Aging.

[1357]  John F. Cryan,et al.  Gut microbiota depletion from early adolescence in mice: Implications for brain and behaviour , 2015, Brain, Behavior, and Immunity.

[1358]  J. Cerqueira,et al.  Absence of IFNγ promotes hippocampal plasticity and enhances cognitive performance , 2016, Translational Psychiatry.

[1359]  M. Pop,et al.  Metagenomic Analysis of the Human Distal Gut Microbiome , 2006, Science.

[1360]  Y. Taché,et al.  Brain regulation of gastric secretion: influence of neuropeptides. , 1980, Proceedings of the National Academy of Sciences of the United States of America.

[1361]  Olga V. Demler,et al.  Lifetime prevalence and age-of-onset distributions of DSM-IV disorders in the National Comorbidity Survey Replication. , 2005, Archives of general psychiatry.

[1362]  Q. Pittman,et al.  Microglia-Dependent Alteration of Glutamatergic Synaptic Transmission and Plasticity in the Hippocampus during Peripheral Inflammation , 2015, The Journal of Neuroscience.

[1363]  Daniel M. Rotroff,et al.  Altered bile acid profile associates with cognitive impairment in Alzheimer's disease—An emerging role for gut microbiome , 2018, Alzheimer's & Dementia.

[1364]  M. Dichgans,et al.  Microbiota Dysbiosis Controls the Neuroinflammatory Response after Stroke , 2016, The Journal of Neuroscience.

[1365]  P. Siersema,et al.  Farnesoid X receptor activation inhibits inflammation and preserves the intestinal barrier in inflammatory bowel disease , 2011, Gut.

[1366]  M. Blaser,et al.  Antibiotics in early life alter the murine colonic microbiome and adiposity , 2012, Nature.

[1367]  W. D. de Vos,et al.  Insight into the prebiotic concept: lessons from an exploratory, double blind intervention study with inulin-type fructans in obese women , 2012, Gut.

[1368]  K. Sharkey,et al.  Plasticity of the enteric nervous system during intestinal inflammation , 2005, Neurogastroenterology and motility : the official journal of the European Gastrointestinal Motility Society.

[1369]  S. Collins A role for the gut microbiota in IBS , 2014, Nature Reviews Gastroenterology &Hepatology.

[1370]  G. Riezzo,et al.  Prophylactic use of a probiotic in the prevention of colic, regurgitation, and functional constipation: a randomized clinical trial. , 2014, JAMA pediatrics.

[1371]  P. Holzer,et al.  Gut Microbiota and the Neuroendocrine System , 2018, Neurotherapeutics.

[1372]  S. Akira,et al.  Microbial recognition by Toll-like receptors. , 2004, Journal of dermatological science.

[1373]  C. Belzer,et al.  The first thousand days – intestinal microbiology of early life: establishing a symbiosis , 2014, Pediatric allergy and immunology : official publication of the European Society of Pediatric Allergy and Immunology.

[1374]  S. Rabot,et al.  Absence of Gut Microbiota Reduces Emotional Reactivity in Japanese Quails (Coturnix japonica) , 2018, Front. Physiol..

[1375]  T. Staverosky,et al.  Treatment of migraine with targeted nutrition focused on improved assimilation and elimination. , 2001, Alternative medicine review : a journal of clinical therapeutic.

[1376]  L. Rutberg Heat Induction of Prophage φ 105 in Bacillus subtilis: Bacteriophage-Induced Bidirectional Replication of the Bacterial Chromosome , 1973, Journal of virology.

[1377]  Rob Knight,et al.  Impact of Dietary Resistant Starch on the Human Gut Microbiome, Metaproteome, and Metabolome , 2017, mBio.

[1378]  P. Rutgeerts,et al.  Baseline microbiota activity and initial bifidobacteria counts influence responses to prebiotic dosing in healthy subjects , 2007, Alimentary pharmacology & therapeutics.

[1379]  R. Edwards,et al.  A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes , 2014, Nature Communications.

[1380]  F. Jacka Nutritional Psychiatry: Where to Next? , 2017, EBioMedicine.

[1381]  Jeffrey I. Gordon,et al.  Mechanisms underlying the resistance to diet-induced obesity in germ-free mice , 2007, Proceedings of the National Academy of Sciences.

[1382]  D. Brough,et al.  Brain injury induces specific changes in the caecal microbiota of mice via altered autonomic activity and mucoprotein production , 2016, Brain, Behavior, and Immunity.

[1383]  Naiman A. Khan,et al.  Associations among diet, the gastrointestinal microbiota, and negative emotional states in adults , 2020, Nutritional neuroscience.

[1384]  H. Guillou,et al.  The gut microbiota: a major player in the toxicity of environmental pollutants? , 2016, npj Biofilms and Microbiomes.

[1385]  P. de Coppet,et al.  Short-chain fatty acids regulate the enteric neurons and control gastrointestinal motility in rats. , 2010, Gastroenterology.

[1386]  T. Hernandez-Boussard,et al.  Probiotics Improve Outcomes After Roux-en-Y Gastric Bypass Surgery: A Prospective Randomized Trial , 2009, Journal of Gastrointestinal Surgery.

[1387]  H. Braak,et al.  Staging of Alzheimer-related cortical destruction. , 1997, International psychogeriatrics.

[1388]  R. Dziarski,et al.  Peptidoglycan recognition proteins: modulators of the microbiome and inflammation , 2011, Nature Reviews Immunology.

[1389]  T. Dinan,et al.  The microbiome regulates amygdala-dependent fear recall , 2017, Molecular Psychiatry.

[1390]  Falk Hildebrand,et al.  Enterotypes in the landscape of gut microbial community composition , 2017, Nature Microbiology.

[1391]  G. Macfarlane,et al.  Collaborative JPEN‐Clinical Nutrition Scientific Publications Role of intestinal bacteria in nutrient metabolism , 1997 .

[1392]  M. Surette,et al.  Age-Associated Microbial Dysbiosis Promotes Intestinal Permeability, Systemic Inflammation, and Macrophage Dysfunction , 2017, Cell host & microbe.

[1393]  J. Dean,et al.  Prevention of Intractable Partial Seizures by Intermittent Vagal Stimulation in Humans: Preliminary Results , 1990, Epilepsia.

[1394]  Chunyan Wu,et al.  Alteration of the fecal microbiota in Chinese patients with Parkinson’s disease , 2018, Brain, Behavior, and Immunity.

[1395]  J. Doré,et al.  Comparative assessment of human and farm animal faecal microbiota using real-time quantitative PCR. , 2009, FEMS microbiology ecology.

[1396]  D. Su,et al.  Propionate Ameliorates Dextran Sodium Sulfate-Induced Colitis by Improving Intestinal Barrier Function and Reducing Inflammation and Oxidative Stress , 2016, Front. Pharmacol..

[1397]  Neil Stollman,et al.  Long-Term Follow-Up of Colonoscopic Fecal Microbiota Transplant for Recurrent Clostridium difficile Infection , 2012, The American Journal of Gastroenterology.

[1398]  Jingyuan Fu,et al.  Causal relationships among the gut microbiome, short-chain fatty acids and metabolic diseases , 2019, Nature Genetics.

[1399]  T. Vatanen,et al.  The effect of host genetics on the gut microbiome , 2016, Nature Genetics.

[1400]  S. Kaufmann,et al.  A nutritive view on the host-pathogen interplay. , 2005, Trends in microbiology.

[1401]  A. Haslberger,et al.  Combined PCR-DGGE fingerprinting and quantitative-PCR indicates shifts in fecal population sizes and diversity of Bacteroides, bifidobacteria and Clostridium cluster IV in institutionalized elderly , 2009, Experimental Gerontology.

[1402]  R. Harris,et al.  High-fat maternal diet during pregnancy persistently alters the offspring microbiome in a primate model , 2014, Nature Communications.

[1403]  Á. Gáti,et al.  Taste reactivity deficit in anorexia nervosa , 2010, Psychiatry and clinical neurosciences.

[1404]  Takao K Hensch,et al.  Critical periods in speech perception: new directions. , 2015, Annual review of psychology.

[1405]  B. Crooker,et al.  Symposium review: Microbial endocrinology-Why the integration of microbes, epithelial cells, and neurochemical signals in the digestive tract matters to ruminant health. , 2018, Journal of dairy science.

[1406]  F. Naef,et al.  The Mouse Microbiome Is Required for Sex-Specific Diurnal Rhythms of Gene Expression and Metabolism , 2019, Cell metabolism.

[1407]  H. Forssberg,et al.  Normal gut microbiota modulates brain development and behavior , 2011, Proceedings of the National Academy of Sciences.

[1408]  W. Garrett,et al.  The Microbial Metabolites, Short-Chain Fatty Acids, Regulate Colonic Treg Cell Homeostasis , 2013, Science.

[1409]  Yueyue Yu,et al.  Effects of Intestinal Microbiota on Brain Development in Humanized Gnotobiotic Mice , 2018, Scientific Reports.

[1410]  F. Bäckhed,et al.  From Dietary Fiber to Host Physiology: Short-Chain Fatty Acids as Key Bacterial Metabolites , 2016, Cell.

[1411]  Artificial sweeteners induce glucose intolerance by altering the gut microbiota , 2014, Nature.

[1412]  Y. Vandenplas,et al.  Oligosaccharides in infant formula , 2002, British Journal of Nutrition.

[1413]  Mark D. Ericson,et al.  A fragment of the Escherichia coli ClpB heat-shock protein is a micromolar melanocortin 1 receptor agonist. , 2015, Bioorganic & medicinal chemistry letters.

[1414]  Jianguo Li,et al.  Short Term Intrarectal Administration of Sodium Propionate Induces Antidepressant-Like Effects in Rats Exposed to Chronic Unpredictable Mild Stress , 2018, Front. Psychiatry.

[1415]  Edward G. Jones,et al.  Santiago Ramón y Cajal and the Croonian Lecture, March 1894 , 1994, Trends in Neurosciences.

[1416]  V. Bolivar,et al.  The BTBR T + tf/J mouse model for autism spectrum disorders–in search of biomarkers , 2013, Behavioural Brain Research.

[1417]  V. Théodorou,et al.  A marketed fermented dairy product containing Bifidobacterium lactis CNCM I‐2494 suppresses gut hypersensitivity and colonic barrier disruption induced by acute stress in rats , 2012, Neurogastroenterology and motility : the official journal of the European Gastrointestinal Motility Society.

[1418]  M. Conway,et al.  BCAA Metabolism and NH3 Homeostasis. , 2016, Advances in neurobiology.

[1419]  G. Buck,et al.  Clostridium scindens: a human gut microbe with a high potential to convert glucocorticoids into androgens , 2013, Journal of Lipid Research.

[1420]  R. Dampney,et al.  The Integrative Action of the Autonomic Nervous System Neurobiology of Homeostasis , 2008 .

[1421]  C. Combs,et al.  Acetate reduces microglia inflammatory signaling in vitro , 2012, Journal of neurochemistry.

[1422]  D. McKay,et al.  Probiotics prevent bacterial translocation and improve intestinal barrier function in rats following chronic psychological stress , 2006, Gut.

[1423]  D. Francisci,et al.  The Bile Acid Receptor GPBAR1 Regulates the M1/M2 Phenotype of Intestinal Macrophages and Activation of GPBAR1 Rescues Mice from Murine Colitis , 2017, The Journal of Immunology.

[1424]  M. Fleshner,et al.  Early life diets with prebiotics and bioactive milk fractions attenuate the impact of stress on learned helplessness behaviours and alter gene expression within neural circuits important for stress resistance , 2017, The European journal of neuroscience.

[1425]  M. Salami,et al.  Corrigendum: Does Severity of Alzheimer's Disease Contribute to Its Responsiveness to Modifying Gut Microbiota? A Double Blind Clinical Trial , 2019, Front. Neurol..

[1426]  E. Nestler,et al.  Sustained hippocampal chromatin regulation in a mouse model of depression and antidepressant action , 2006, Nature Neuroscience.

[1427]  S. Cocozza,et al.  Sex-related alterations of gut microbiota composition in the BTBR mouse model of autism spectrum disorder , 2017, Scientific Reports.

[1428]  F. Azpiroz,et al.  Effects of scFOS on the composition of fecal microbiota and anxiety in patients with irritable bowel syndrome: a randomized, double blind, placebo controlled study , 2017, Neurogastroenterology and motility : the official journal of the European Gastrointestinal Motility Society.

[1429]  Y. Nie,et al.  Outcomes and prognostic factors of fecal microbiota transplantation in patients with slow transit constipation: results from a prospective study with long-term follow-up , 2017, Gastroenterology report.

[1430]  Linfeng Yang,et al.  Fecal microbiota transplantation in patients with slow-transit constipation: A randomized, clinical trial , 2017, PloS one.

[1431]  R. Richardson,et al.  Acute early-life stress results in premature emergence of adult-like fear retention and extinction relapse in infant rats. , 2013, Behavioral neuroscience.

[1432]  Claire Williams,et al.  Impact of consuming a milk drink containing a probiotic on mood and cognition , 2007, European Journal of Clinical Nutrition.

[1433]  Hee-Sun Kim,et al.  Anti-inflammatory effects of short chain fatty acids in IFN-γ-stimulated RAW 264.7 murine macrophage cells : Involvement of NF-κB and ERK signaling pathways , 2007 .

[1434]  R. Nicoll,et al.  Mechanisms underlying long-term potentiation of synaptic transmission. , 1991, Annual review of neuroscience.

[1435]  Dong-Hyun Kim,et al.  Lactobacillus plantarum C29 Alleviates TNBS-Induced Memory Impairment in Mice. , 2018, Journal of microbiology and biotechnology.

[1436]  C. Dotson,et al.  Modulation of taste responsiveness by the satiation hormone peptide YY , 2013, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[1437]  Eva H. Telzer,et al.  Mind and gut: Associations between mood and gastrointestinal distress in children exposed to adversity , 2019, Development and Psychopathology.

[1438]  K. Berer,et al.  Gut microbiota from multiple sclerosis patients enables spontaneous autoimmune encephalomyelitis in mice , 2017, Proceedings of the National Academy of Sciences.

[1439]  M. Eisenstein Microbiome: Bacterial broadband , 2016, Nature.

[1440]  B. Haas,et al.  A Catalog of Reference Genomes from the Human Microbiome , 2010, Science.

[1441]  J. Broman,et al.  Synaptic Plasticity and Pain: Role of Ionotropic Glutamate Receptors , 2011, The Neuroscientist : a review journal bringing neurobiology, neurology and psychiatry.

[1442]  P. Tognini,et al.  Gut Microbiota: A Potential Regulator of Neurodevelopment , 2017, Front. Cell. Neurosci..

[1443]  K. Harada,et al.  Commensal Bacteria-Dependent Indole Production Enhances Epithelial Barrier Function in the Colon , 2013, PloS one.

[1444]  Harry Sokol,et al.  Gut Microbiota Regulation of Tryptophan Metabolism in Health and Disease. , 2018, Cell host & microbe.

[1445]  R. Richardson,et al.  Early-life stress leads to sex-dependent changes in pubertal timing in rats that are reversed by a probiotic formulation. , 2018, Developmental psychobiology.

[1446]  F. Dickerson,et al.  Individuals hospitalized with acute mania have increased exposure to antimicrobial medications , 2016, Bipolar disorders.

[1447]  S. Nozoe,et al.  Changes in taste responsiveness in patients with anorexia nervosa during behavior therapy , 1996, Physiology & Behavior.

[1448]  J. Jamart,et al.  Insulin sensitivity, adjusted beta-cell function and adiponectinaemia among lean drug-naive schizophrenic patients treated with atypical antipsychotic drugs: a nine-month prospective study. , 2008, Diabetes & metabolism.

[1449]  P. Salamon,et al.  Bacteriophage adhering to mucus provide a non–host-derived immunity , 2013, Proceedings of the National Academy of Sciences.

[1450]  M. Hornef,et al.  Does a prenatal bacterial microbiota exist? , 2017, Mucosal Immunology.

[1451]  R. Tulley,et al.  Dietary Resistant Starch Increases Hypothalamic POMC Expression in Rats , 2009, Obesity.

[1452]  M. Christman,et al.  Bifidobacterium bifidum R0071 results in a greater proportion of healthy days and a lower percentage of academically stressed students reporting a day of cold/flu: a randomised, double-blind, placebo-controlled study , 2015, British Journal of Nutrition.

[1453]  Andrew P. Salzwedel,et al.  Gut microbiome and brain functional connectivity in infants-a preliminary study focusing on the amygdala , 2019, Psychopharmacology.

[1454]  P. Cotter,et al.  Forgotten fungi—the gut mycobiome in human health and disease , 2017, FEMS microbiology reviews.

[1455]  W. D. de Vos,et al.  Fecal microbiota transplantation against intestinal colonization by extended spectrum beta-lactamase producing Enterobacteriaceae: a proof of principle study , 2018, BMC Research Notes.

[1456]  B. Middel,et al.  Effects of a restricted elimination diet on the behaviour of children with attention-deficit hyperactivity disorder (INCA study): a randomised controlled trial1) , 2011, The Lancet.

[1457]  R. Knight,et al.  Gut microbiome and magnetic resonance spectroscopy study of subjects at ultra-high risk for psychosis may support the membrane hypothesis , 2018, European Psychiatry.

[1458]  M. Lyte,et al.  Alpha and beta adrenergic receptor involvement in catecholamine-induced growth of gram-negative bacteria. , 1993, Biochemical and biophysical research communications.

[1459]  L. Zhan,et al.  Associations of the Mediterranean diet with cognitive and neuroimaging phenotypes of dementia in healthy older adults. , 2019, The American journal of clinical nutrition.

[1460]  Fred W. Turek,et al.  Circadian Disorganization Alters Intestinal Microbiota , 2014, PloS one.

[1461]  J. Elliott,et al.  Escherichia coli has two homologous glutamate decarboxylase genes that map to distinct loci , 1992, Journal of bacteriology.

[1462]  Marcus J. Claesson,et al.  Comparing Apples and Oranges?: Next Generation Sequencing and Its Impact on Microbiome Analysis , 2016, PloS one.

[1463]  E. Hsiao,et al.  The Microbiome and Host Behavior. , 2017, Annual review of neuroscience.

[1464]  A. Randich,et al.  Vagal afferent modulation of spinal nociceptive transmission in the rat. , 1989, Journal of neurophysiology.

[1465]  E. Elliott,et al.  Sodium butyrate attenuates social behavior deficits and modifies the transcription of inhibitory/excitatory genes in the frontal cortex of an autism model , 2016, Neuropharmacology.

[1466]  J. Stewart 9 – Innate and acquired immunity , 2012 .

[1467]  D. Appelt,et al.  Identification and localization of Chlamydia pneumoniae in the Alzheimer's brain , 1998, Medical Microbiology and Immunology.

[1468]  Rebecca Wall,et al.  Bacterial neuroactive compounds produced by psychobiotics. , 2014, Advances in experimental medicine and biology.

[1469]  Patrick M. Smith,et al.  Regulation of life span by the gut microbiota in the short-lived African turquoise killifish , 2017, bioRxiv.

[1470]  J. Clemente,et al.  Microbiota-driven transcriptional changes in prefrontal cortex override genetic differences in social behavior , 2016, eLife.

[1471]  K. Schleifer,et al.  Peptidoglycan Types of Bacterial Cell Walls and Their Taxonomic Implications , 1973, Bacteriological reviews.

[1472]  R. Flavell,et al.  Shaping of Intestinal Microbiota in Nlrp6- and Rag2-Deficient Mice Depends on Community Structure. , 2017, Cell reports.

[1473]  T. R. Licht,et al.  Microbial Enterotypes, Inferred by the Prevotella-to-Bacteroides Ratio, Remained Stable during a 6-Month Randomized Controlled Diet Intervention with the New Nordic Diet , 2013, Applied and Environmental Microbiology.

[1474]  P. Deyn,et al.  The kynurenine pathway in major depression: Haplotype analysis of three related functional candidate genes , 2011, Psychiatry Research.

[1475]  T. Dinan,et al.  Targeting the Microbiota-Gut-Brain Axis: Prebiotics Have Anxiolytic and Antidepressant-like Effects and Reverse the Impact of Chronic Stress in Mice , 2017, Biological Psychiatry.

[1476]  Fumiaki Tanaka,et al.  Sodium butyrate ameliorates phenotypic expression in a transgenic mouse model of spinal and bulbar muscular atrophy. , 2004, Human molecular genetics.

[1477]  Paul J Kennedy,et al.  Irritable bowel syndrome: a microbiome-gut-brain axis disorder? , 2014, World journal of gastroenterology.

[1478]  T. Tompkins,et al.  The role of luminal factors in the recovery of gastric function and behavioral changes after chronic Helicobacter pylori infection. , 2008, American journal of physiology. Gastrointestinal and liver physiology.

[1479]  Q. Aziz,et al.  Functional brain imaging of gastrointestinal sensation in health and disease. , 2007, World journal of gastroenterology.

[1480]  H. Kettenmann,et al.  Physiology of microglia. , 2011, Physiological reviews.

[1481]  Honglei Chen,et al.  The vermiform appendix impacts the risk of developing Parkinson’s disease , 2018, Science Translational Medicine.

[1482]  A. Cox,et al.  Obesity, inflammation, and the gut microbiota. , 2015, The lancet. Diabetes & endocrinology.

[1483]  T. Marsh,et al.  Fecal bacterial diversity of human‐habituated wild chimpanzees (Pan troglodytes schweinfurthii) at Mahale Mountains National Park, Western Tanzania , 2010, American journal of primatology.

[1484]  D. Santini,et al.  Activated mast cells in proximity to colonic nerves correlate with abdominal pain in irritable bowel syndrome. , 2004, Gastroenterology.

[1485]  Patrice D Cani,et al.  Diabetes, obesity and gut microbiota. , 2013, Best practice & research. Clinical gastroenterology.

[1486]  H. Tun,et al.  Exposure to household furry pets influences the gut microbiota of infants at 3–4 months following various birth scenarios , 2017, Microbiome.

[1487]  Frederic D Bushman,et al.  Rhythmicity of the intestinal microbiota is regulated by gender and the host circadian clock , 2015, Proceedings of the National Academy of Sciences.

[1488]  G. MacQueen,et al.  Probiotic treatment of rat pups normalises corticosterone release and ameliorates colonic dysfunction induced by maternal separation , 2007, Gut.

[1489]  K. Whelan,et al.  The low FODMAP diet in the management of irritable bowel syndrome: an evidence‐based review of FODMAP restriction, reintroduction and personalisation in clinical practice , 2018, Journal of human nutrition and dietetics : the official journal of the British Dietetic Association.

[1490]  A. Gewirtz,et al.  Faculty Opinions recommendation of Dietary-fat-induced taurocholic acid promotes pathobiont expansion and colitis in Il10-/- mice. , 2013 .

[1491]  M. Cawthorne,et al.  Roles of GPR41 and GPR43 in leptin secretory responses of murine adipocytes to short chain fatty acids , 2010, FEBS letters.

[1492]  R. Bibiloni Rodent models to study the relationships between mammals and their bacterial inhabitants , 2012, Gut microbes.

[1493]  H. Khamis,et al.  Distal gut microbiota of adolescent children is different from that of adults. , 2011, FEMS microbiology ecology.

[1494]  Lai Guan Ng,et al.  The gut microbiota influences blood-brain barrier permeability in mice , 2014, Science Translational Medicine.

[1495]  M. Berk,et al.  Fermented foods, the gut and mental health: a mechanistic overview with implications for depression and anxiety , 2018, Nutritional neuroscience.

[1496]  B. Berger,et al.  The anxiolytic effect of Bifidobacterium longum NCC3001 involves vagal pathways for gut–brain communication , 2011, Neurogastroenterology and motility : the official journal of the European Gastrointestinal Motility Society.

[1497]  Lei Wu,et al.  Adherence to Mediterranean diet and risk of developing cognitive disorders: An updated systematic review and meta-analysis of prospective cohort studies , 2017, Scientific Reports.

[1498]  M. Wozniak,et al.  Herpes simplex virus infection causes cellular β-amyloid accumulation and secretase upregulation , 2007, Neuroscience Letters.

[1499]  Jingyuan Fu,et al.  Structural variation in the gut microbiome associates with host health , 2019, Nature.

[1500]  Junhai Pan,et al.  Intestinal Crosstalk between Microbiota and Serotonin and its Impact on Gut Motility. , 2018, Current pharmaceutical biotechnology.

[1501]  M. Sekelja,et al.  Correlation between the human fecal microbiota and depression , 2014, Neurogastroenterology and motility : the official journal of the European Gastrointestinal Motility Society.

[1502]  J. Guelfi,et al.  Factors predictive of ten‐year mortality in severe anorexia nervosa patients , 2011, Acta psychiatrica Scandinavica.

[1503]  P. Ducrotte,et al.  Efficacy and safety profile of LCR35 complete freeze-dried culture in irritable bowel syndrome: a randomized, double-blind study. , 2012, World journal of gastroenterology.

[1504]  W. MacNaughton,et al.  Probiotics Improve Inflammation-Associated Sickness Behavior by Altering Communication between the Peripheral Immune System and the Brain , 2015, The Journal of Neuroscience.

[1505]  Patrice D Cani,et al.  Enteroendocrine Cells: Metabolic Relays between Microbes and Their Host. , 2017, Endocrine development.

[1506]  J. Levine,et al.  Vagal modulation of nociception is mediated by adrenomedullary epinephrine in the rat , 2003, The European journal of neuroscience.

[1507]  T. Dinan,et al.  What’s bugging your teen?—The microbiota and adolescent mental health , 2016, Neuroscience & Biobehavioral Reviews.

[1508]  Marcus J Claesson,et al.  An irritable bowel syndrome subtype defined by species-specific alterations in faecal microbiota , 2011, Gut.

[1509]  T. Dinan,et al.  N-3 Polyunsaturated Fatty Acids (PUFAs) Reverse the Impact of Early-Life Stress on the Gut Microbiota , 2015, PloS one.

[1510]  Lu Wang,et al.  The NIH Human Microbiome Project. , 2009, Genome research.

[1511]  D. Ercolini,et al.  Antibiotic-induced microbiota perturbation causes gut endocannabinoidome changes, hippocampal neuroglial reorganization and depression in mice , 2018, Brain, Behavior, and Immunity.

[1512]  T. Wood,et al.  Roles of indole as an interspecies and interkingdom signaling molecule. , 2015, Trends in microbiology.

[1513]  F. Bushman,et al.  Comparison of placenta samples with contamination controls does not provide evidence for a distinct placenta microbiota , 2016, Microbiome.

[1514]  N. Kasparian,et al.  What can the gut microbiome teach us about the connections between child physical and mental health? A systematic review. , 2019, Developmental psychobiology.

[1515]  T. Arentsen,et al.  Sex-dependent alterations in motor and anxiety-like behavior of aged bacterial peptidoglycan sensing molecule 2 knockout mice , 2018, Brain, Behavior, and Immunity.

[1516]  D. Anthony,et al.  Increased cortical neuronal responses to NMDA and improved attentional set-shifting performance in rats following prebiotic (B-GOS®) ingestion , 2018, European Neuropsychopharmacology.

[1517]  G. Rogler,et al.  Smoking Cessation Alters Intestinal Microbiota: Insights from Quantitative Investigations on Human Fecal Samples Using FISH , 2014, Inflammatory bowel diseases.

[1518]  Yaxuan Sun,et al.  Chitosan oligosaccharides alleviate cognitive deficits in an amyloid-β1-42-induced rat model of Alzheimer's disease. , 2016, International journal of biological macromolecules.

[1519]  Ronan M. T. Fleming,et al.  A systems biology approach to studying the role of microbes in human health. , 2013, Current opinion in biotechnology.

[1520]  C. Choi,et al.  Bacterial meningitis. , 1992, Clinics in geriatric medicine.

[1521]  S. Shultz,et al.  Intracerebroventricular injection of propionic acid, an enteric metabolite implicated in autism, induces social abnormalities that do not differ between seizure-prone (FAST) and seizure-resistant (SLOW) rats , 2015, Behavioural Brain Research.

[1522]  Mathieu Almeida,et al.  Dietary intervention impact on gut microbial gene richness , 2013, Nature.

[1523]  R. Tanzi,et al.  Alzheimer’s Disease-Associated β-Amyloid Is Rapidly Seeded by Herpesviridae to Protect against Brain Infection , 2018, Neuron.

[1524]  J. Maniscalco,et al.  Vagal Interoceptive Modulation of Motivated Behavior. , 2018, Physiology.

[1525]  Sean M. Kearney,et al.  Salt-responsive gut commensal modulates TH17 axis and disease , 2017, Nature.

[1526]  C. Agnisola,et al.  Probiotic modulation of the microbiota-gut-brain axis and behaviour in zebrafish , 2016, Scientific Reports.

[1527]  E. Mayer,et al.  The neurobiology of stress and gastrointestinal disease , 2000, Gut.

[1528]  Takafumi Hara,et al.  Short-chain fatty acids and ketones directly regulate sympathetic nervous system via G protein-coupled receptor 41 (GPR41) , 2011, Proceedings of the National Academy of Sciences.

[1529]  A. Ericsson,et al.  Variable Colonization after Reciprocal Fecal Microbiota Transfer between Mice with Low and High Richness Microbiota , 2017, Front. Microbiol..

[1530]  L. Cigliano,et al.  Dietary fructose causes defective insulin signalling and ceramide accumulation in the liver that can be reversed by gut microbiota modulation , 2017, Food & nutrition research.

[1531]  Joseph S. Takahashi,et al.  Transcriptional architecture of the mammalian circadian clock , 2016, Nature Reviews Genetics.

[1532]  M. Raymer,et al.  The networks of human gut microbe–metabolite associations are different between health and irritable bowel syndrome , 2015, The ISME Journal.

[1533]  Vanja Klepac-Ceraj,et al.  PCR-Induced Sequence Artifacts and Bias: Insights from Comparison of Two 16S rRNA Clone Libraries Constructed from the Same Sample , 2005, Applied and Environmental Microbiology.

[1534]  T. Hökfelt,et al.  Autoantibodies against appetite-regulating peptide hormones and neuropeptides: Putative modulation by gut microflora , 2008, Nutrition.

[1535]  J. Davie Inhibition of histone deacetylase activity by butyrate. , 2003, The Journal of nutrition.

[1536]  L. Hansen,et al.  Faecal microbiota transplantation alters gut microbiota in patients with irritable bowel syndrome: results from a randomised, double-blind placebo-controlled study , 2018, Gut.

[1537]  H. Tun,et al.  Effects of exclusive breastfeeding on infant gut microbiota: a meta-analysis across studies and populations , 2018, bioRxiv.

[1538]  M. Tomita,et al.  A Metabolomic-Based Evaluation of the Role of Commensal Microbiota throughout the Gastrointestinal Tract in Mice , 2018, Microorganisms.

[1539]  J. Rho,et al.  Ketogenic diet modifies the gut microbiota in a murine model of autism spectrum disorder , 2016, Molecular Autism.

[1540]  C. Lowry,et al.  Growing literature but limited evidence: A systematic review regarding prebiotic and probiotic interventions for those with traumatic brain injury and/or posttraumatic stress disorder , 2017, Brain, Behavior, and Immunity.

[1541]  M. Salami,et al.  Probiotics treatment improves diabetes-induced impairment of synaptic activity and cognitive function: Behavioral and electrophysiological proofs for microbiome–gut–brain axis , 2013, Neuroscience.

[1542]  J. Grider,et al.  The peristaltic reflex induced by short-chain fatty acids is mediated by sequential release of 5-HT and neuronal CGRP but not BDNF. , 2007, American journal of physiology. Gastrointestinal and liver physiology.

[1543]  J. Raes,et al.  Assessment of faecal microbial transfer in irritable bowel syndrome with severe bloating , 2016, Gut.

[1544]  I. Amit,et al.  Host microbiota constantly control maturation and function of microglia in the CNS , 2015, Nature Neuroscience.

[1545]  S. Collins The Intestinal Microbiota in the Irritable Bowel Syndrome. , 2016, International review of neurobiology.

[1546]  Glenn R. Gibson,et al.  The International Scientific Association for Probiotics and Prebiotics ( ISAPP ) consensus statement on the definition and scope of prebiotics , 2018 .

[1547]  E. Severance,et al.  Probiotic normalization of Candida albicans in schizophrenia: A randomized, placebo-controlled, longitudinal pilot study , 2017, Brain, Behavior, and Immunity.

[1548]  A. Gasbarrini,et al.  The human gut microbiota and virome: Potential therapeutic implications , 2015, Digestive and Liver Disease.

[1549]  N. Mach,et al.  Endurance exercise and gut microbiota: A review , 2016, Journal of sport and health science.

[1550]  S. Hutson,et al.  Branched-Chain Amino Acids and Brain Metabolism , 2017, Neurochemical Research.

[1551]  D. Ward,et al.  Alcohol-related changes in the intestinal microbiome influence neutrophil infiltration, inflammation and steatosis in early alcoholic hepatitis in mice , 2017, PloS one.

[1552]  J. Foster,et al.  Acid resistance in Escherichia coli. , 2003, Advances in applied microbiology.

[1553]  Paula Ravasco,et al.  Definition and classification of cancer cachexia: an international consensus. , 2011, The Lancet. Oncology.

[1554]  D. Nutt,et al.  Tryptophan metabolism in the central nervous system: medical implications , 2006, Expert Reviews in Molecular Medicine.

[1555]  L. Desbonnet,et al.  The probiotic Bifidobacteria infantis: An assessment of potential antidepressant properties in the rat. , 2008, Journal of psychiatric research.

[1556]  S. Maier,et al.  Microglia serve as a neuroimmune substrate for stress-induced potentiation of CNS pro-inflammatory cytokine responses , 2007, Brain, Behavior, and Immunity.

[1557]  F. A. Whitlock Some Psychiatric Consequences of Gastrectomy , 1961, British medical journal.

[1558]  T. Dinan,et al.  Short‐chain fatty acids: microbial metabolites that alleviate stress‐induced brain–gut axis alterations , 2018, The Journal of physiology.

[1559]  G. Macfarlane,et al.  Short chain fatty acids in human large intestine, portal, hepatic and venous blood. , 1987, Gut.

[1560]  Leah M. Feazel,et al.  Sex Differences in the Gut Microbiome Drive Hormone-Dependent Regulation of Autoimmunity , 2013, Science.

[1561]  Z. Asemi,et al.  The effects of vitamin D and probiotic co-supplementation on mental health parameters and metabolic status in type 2 diabetic patients with coronary heart disease: A randomized, double-blind, placebo-controlled trial , 2018, Progress in Neuro-Psychopharmacology and Biological Psychiatry.

[1562]  Eunseog Youn,et al.  Pyrosequencing study of fecal microflora of autistic and control children. , 2010, Anaerobe.

[1563]  D. Savage,et al.  Transit time of epithelial cells in the small intestines of germfree mice and ex-germfree mice associated with indigenous microorganisms , 1981, Applied and environmental microbiology.

[1564]  T. Paus,et al.  Why do many psychiatric disorders emerge during adolescence? , 2008, Nature Reviews Neuroscience.

[1565]  Fredrik H. Karlsson,et al.  Roux-en-Y Gastric Bypass and Vertical Banded Gastroplasty Induce Long-Term Changes on the Human Gut Microbiome Contributing to Fat Mass Regulation , 2015, Cell metabolism.

[1566]  Fred H. Gage,et al.  Exercise Enhances Learning and Hippocampal Neurogenesis in Aged Mice , 2005, The Journal of Neuroscience.

[1567]  D. Appelt,et al.  Chlamydophila pneumoniae and the etiology of late-onset Alzheimer's disease. , 2008, Journal of Alzheimer's disease : JAD.

[1568]  John F. Cryan,et al.  Psychobiotics: A Novel Class of Psychotropic , 2013, Biological Psychiatry.

[1569]  M. Trauner,et al.  Temporal Bacterial Community Dynamics Vary Among Ulcerative Colitis Patients After Fecal Microbiota Transplantation , 2013, The American Journal of Gastroenterology.

[1570]  M. Lyte,et al.  Catecholamine induced growth of gram negative bacteria. , 1992, Life sciences.

[1571]  W. Jackson,et al.  Specific probiotic therapy attenuates antibiotic induced visceral hypersensitivity in mice , 2005, Gut.

[1572]  R. Wevers,et al.  The GC–MS metabolomics signature in patients with fibromyalgia syndrome directs to dysbiosis as an aspect contributing factor of FMS pathophysiology , 2019, Metabolomics.

[1573]  Morris A. Swertz,et al.  Population-based metagenomics analysis reveals markers for gut microbiome composition and diversity , 2016, Science.

[1574]  S. Chevalier,et al.  Gamma-aminobutyric acid acts as a specific virulence regulator in Pseudomonas aeruginosa. , 2013, Microbiology.

[1575]  K. Chopra,et al.  Lactobacillus plantarum MTCC 9510 supplementation protects from chronic unpredictable and sleep deprivation‐induced behaviour, biochemical and selected gut microbial aberrations in mice , 2018, Journal of applied microbiology.

[1576]  N. Calakos,et al.  Neuroepithelial circuit formed by innervation of sensory enteroendocrine cells. , 2015, The Journal of clinical investigation.

[1577]  M. Dapoigny,et al.  The hypersensitivity to colonic distension of IBS patients can be transferred to rats through their fecal microbiota , 2013, Neurogastroenterology and motility : the official journal of the European Gastrointestinal Motility Society.

[1578]  D. Hovda,et al.  Ketogenic diet decreases oxidative stress and improves mitochondrial respiratory complex activity , 2016, Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism.

[1579]  A. Lüthi,et al.  Neuronal circuits for fear and anxiety , 2015, Nature Reviews Neuroscience.

[1580]  M. Lynch,et al.  Modulation of Intestinal Microbiota by the Probiotic VSL#3 Resets Brain Gene Expression and Ameliorates the Age-Related Deficit in LTP , 2014, PloS one.

[1581]  Yunwei Wang,et al.  Dietary fat-induced taurocholic acid production promotes pathobiont and colitis in IL-10−/− mice , 2012, Nature.

[1582]  Patrick D. Schloss,et al.  Reducing the Effects of PCR Amplification and Sequencing Artifacts on 16S rRNA-Based Studies , 2011, PloS one.

[1583]  Wei Zhao,et al.  Hippocampal mTOR signaling is required for the antidepressant effects of paroxetine , 2018, Neuropharmacology.

[1584]  Hu Zhang,et al.  Occurrence of trace elements and antibiotics in manure-based fertilizers from the Zhejiang Province of China. , 2016, The Science of the total environment.

[1585]  E. Phelps,et al.  The influence of acute stress on the regulation of conditioned fear , 2014, Neurobiology of Stress.

[1586]  K. Kaliannan,et al.  Omega-3 fatty acids prevent early-life antibiotic exposure-induced gut microbiota dysbiosis and later-life obesity , 2016, International Journal of Obesity.

[1587]  P. Mattei,et al.  Systemic bile acid sensing by G protein‐coupled bile acid receptor 1 (GPBAR1) promotes PYY and GLP‐1 release , 2013, British journal of pharmacology.

[1588]  Weston R. Whitaker,et al.  Gut Microbiota-Produced Tryptamine Activates an Epithelial G-Protein-Coupled Receptor to Increase Colonic Secretion. , 2018, Cell host & microbe.

[1589]  U. Sundaram,et al.  Monocarboxylate 4 Mediated Butyrate Transport in a Rat Intestinal Epithelial Cell Line , 2013, Digestive Diseases and Sciences.

[1590]  G. Gloor,et al.  Evidence for Greater Production of Colonic Short Chain Fatty Acids in Overweight than Lean Humans , 2014, International Journal of Obesity.

[1591]  Maria Saarela,et al.  Analysis of microbiota in first episode psychosis identifies preliminary associations with symptom severity and treatment response , 2017, Schizophrenia Research.

[1592]  Jeffrey N. Weiser,et al.  Recognition of Peptidoglycan from the Microbiota by Nod1 Enhances Systemic Innate Immunity , 2010, Nature Medicine.

[1593]  S. Rabot,et al.  Absence of the gut microbiota enhances anxiety-like behavior and neuroendocrine response to acute stress in rats , 2014, Psychoneuroendocrinology.

[1594]  T. Borody,et al.  Microbiota Transfer Therapy alters gut ecosystem and improves gastrointestinal and autism symptoms: an open-label study , 2017, Microbiome.

[1595]  Mihai Pop,et al.  Bioinformatics for the Human Microbiome Project , 2012, PLoS Comput. Biol..

[1596]  Y. Saeki,et al.  Dysbiosis Contributes to Arthritis Development via Activation of Autoreactive T Cells in the Intestine , 2016, Arthritis & rheumatology.

[1597]  John F. Cryan,et al.  May the Force Be With You: The Light and Dark Sides of the Microbiota–Gut–Brain Axis in Neuropsychiatry , 2016, CNS Drugs.

[1598]  J. Browning,et al.  Development of New Symptoms Following Medical and Surgical Treatment for Duodenal Ulcer , 1953, Psychosomatic medicine.

[1599]  P. Scully,et al.  Hypothalamic-pituitary-gut axis dysregulation in irritable bowel syndrome: plasma cytokines as a potential biomarker? , 2006, Gastroenterology.

[1600]  K. Bønnelykke,et al.  Reduced diversity of the intestinal microbiota during infancy is associated with increased risk of allergic disease at school age. , 2011, The Journal of allergy and clinical immunology.

[1601]  S. Hwang,et al.  Bacteria activate sensory neurons that modulate pain and inflammation , 2013, Nature.

[1602]  Sarah-Jayne Blakemore,et al.  Imaging brain development: The adolescent brain , 2012, NeuroImage.

[1603]  Jenny Sauk,et al.  Disease-Specific Alterations in the Enteric Virome in Inflammatory Bowel Disease , 2015, Cell.

[1604]  W. D. de Jonge,et al.  Intestinal Fungal Dysbiosis Is Associated With Visceral Hypersensitivity in Patients With Irritable Bowel Syndrome and Rats. , 2017, Gastroenterology.

[1605]  Gut microbiota dysbiosis in male patients with chronic traumatic complete spinal cord injury , 2018, Journal of Translational Medicine.

[1606]  T. Tompkins,et al.  Bifidobacterium longum and Lactobacillus helveticus Synergistically Suppress Stress-related Visceral Hypersensitivity Through Hypothalamic-Pituitary-Adrenal Axis Modulation , 2018, Journal of neurogastroenterology and motility.

[1607]  H. Clevers,et al.  Microbiota Controls the Homeostasis of Glial Cells in the Gut Lamina Propria , 2015, Neuron.

[1608]  C P Buchanan,et al.  Short-Term Benefit From Oral Vancomycin Treatment of Regressive-Onset Autism , 2000, Journal of child neurology.

[1609]  S. Akira,et al.  A role for fungal β-glucans and their receptor Dectin-1 in the induction of autoimmune arthritis in genetically susceptible mice , 2005, The Journal of experimental medicine.

[1610]  J. Ruas,et al.  Kynurenines: Tryptophan’s metabolites in exercise, inflammation, and mental health , 2017, Science.

[1611]  G. Boylan,et al.  Bifidobacterium longum 1714 as a translational psychobiotic: modulation of stress, electrophysiology and neurocognition in healthy volunteers , 2016, Translational psychiatry.

[1612]  C. Gariepy Intestinal Motility Disorders and Development of the Enteric Nervous System , 2001, Pediatric Research.

[1613]  R. Ransohoff,et al.  Microglia in Health and Disease. , 2015, Cold Spring Harbor perspectives in biology.

[1614]  J. Hebebrand,et al.  Hyperactivity in patients with anorexia nervosa and in semistarved rats: evidence for a pivotal role of hypoleptinemia , 2003, Physiology & Behavior.

[1615]  A. Jaeschke,et al.  Mammalian TOR: A Homeostatic ATP Sensor , 2001, Science.

[1616]  J. Cryan,et al.  Converging effects of a Bifidobacterium and Lactobacillus probiotic strain on mouse intestinal physiology. , 2014, American journal of physiology. Gastrointestinal and liver physiology.

[1617]  Francesco Salvatore,et al.  The role of the gut microbiome in the healthy adult status. , 2015, Clinica chimica acta; international journal of clinical chemistry.

[1618]  N. Pons,et al.  Indole, a Signaling Molecule Produced by the Gut Microbiota, Negatively Impacts Emotional Behaviors in Rats , 2018, Front. Neurosci..

[1619]  I. Finnie,et al.  Colonic mucin synthesis is increased by sodium butyrate. , 1995, Gut.

[1620]  A. Mohammadi,et al.  The effects of probiotics on mental health and hypothalamic–pituitary–adrenal axis: A randomized, double-blind, placebo-controlled trial in petrochemical workers , 2016, Nutritional neuroscience.

[1621]  E. Valjent,et al.  Cafeteria diet induces neuroplastic modifications in the nucleus accumbens mediated by microglia activation , 2018, Addiction biology.

[1622]  Robert A Harris,et al.  Mutations in BCKD-kinase Lead to a Potentially Treatable Form of Autism with Epilepsy , 2012, Science.

[1623]  T. Dinan,et al.  Regulation of prefrontal cortex myelination by the microbiota , 2016, Translational Psychiatry.

[1624]  B. Naliboff,et al.  Consumption of fermented milk product with probiotic modulates brain activity. , 2013, Gastroenterology.

[1625]  C. Lam,et al.  Differential Effects of FODMAPs (Fermentable Oligo-, Di-, Mono-Saccharides and Polyols) on Small and Large Intestinal Contents in Healthy Subjects Shown by MRI , 2013, The American Journal of Gastroenterology.

[1626]  M. Kavaliers,et al.  The effects of lipopolysaccharide and lithium chloride on the ingestion of a bitter–sweet taste: Comparing intake and palatability , 2005, Brain, Behavior, and Immunity.

[1627]  Barbara M. Bakker,et al.  The role of short-chain fatty acids in the interplay between diet, gut microbiota, and host energy metabolism , 2013, Journal of Lipid Research.

[1628]  R. Glen,et al.  Microbiome–host systems interactions: protective effects of propionate upon the blood–brain barrier , 2018, Microbiome.

[1629]  N. Volkow,et al.  Whole-body pharmacokinetics of HDAC inhibitor drugs, butyric acid, valproic acid and 4-phenylbutyric acid measured with carbon-11 labeled analogs by PET. , 2013, Nuclear medicine and biology.

[1630]  P. Svenningsson,et al.  Vagotomy and Parkinson disease , 2017, Neurology.

[1631]  M. van den Buuse,et al.  Ketogenic diet prevents impaired prepulse inhibition of startle in an acute NMDA receptor hypofunction model of schizophrenia , 2019, Schizophrenia Research.

[1632]  Alon Chen,et al.  Determining the role of microRNAs in psychiatric disorders , 2015, Nature Reviews Neuroscience.

[1633]  Li-Huei Tsai,et al.  Recovery of learning and memory is associated with chromatin remodelling , 2007, Nature.

[1634]  D. Hodgson,et al.  Effect of Maternal Probiotic Intervention on HPA Axis, Immunity and Gut Microbiota in a Rat Model of Irritable Bowel Syndrome , 2012, PloS one.

[1635]  T. Dinan,et al.  Gut microbiome correlates with altered striatal dopamine receptor expression in a model of compulsive alcohol seeking , 2018, Neuropharmacology.

[1636]  N. Oezguen,et al.  Differences in gut microbial composition correlate with regional brain volumes in irritable bowel syndrome , 2017, Microbiome.

[1637]  D. Malo,et al.  Host resistance to infection: genetic control of lipopolysaccharide responsiveness by TOLL-like receptor genes. , 1999, Trends in genetics : TIG.

[1638]  L. Rinaman Ascending projections from the caudal visceral nucleus of the solitary tract to brain regions involved in food intake and energy expenditure , 2010, Brain Research.

[1639]  K. O'Halloran,et al.  Manipulation of gut microbiota blunts the ventilatory response to hypercapnia in adult rats , 2019, EBioMedicine.

[1640]  Y. Chida,et al.  Postnatal microbial colonization programs the hypothalamic–pituitary–adrenal system for stress response in mice , 2004, The Journal of physiology.

[1641]  Gregor Hasler,et al.  Vagus Nerve as Modulator of the Brain–Gut Axis in Psychiatric and Inflammatory Disorders , 2018, Front. Psychiatry.

[1642]  Renan Corrêa-Oliveira,et al.  Regulation of immune cell function by short-chain fatty acids , 2016, Clinical & translational immunology.

[1643]  J. Bienenstock,et al.  Psychoactive bacteria Lactobacillus rhamnosus (JB-1) elicits rapid frequency facilitation in vagal afferents. , 2013, American journal of physiology. Gastrointestinal and liver physiology.

[1644]  B. Pineda,et al.  Kynurenine pathway metabolites and enzymes involved in redox reactions , 2017, Neuropharmacology.

[1645]  A. Goday,et al.  The Gut Microbiome Profile in Obesity: A Systematic Review , 2018, International journal of endocrinology.

[1646]  Eran Segal,et al.  Transkingdom Control of Microbiota Diurnal Oscillations Promotes Metabolic Homeostasis , 2014, Cell.

[1647]  M. Takiguchi,et al.  Serial measurement of pancreatic lipase immunoreactivity concentration in dogs with immune‐mediated disease treated with prednisolone , 2017, The Journal of small animal practice.

[1648]  C. Bernstein The Brain-Gut Axis and Stress in Inflammatory Bowel Disease. , 2017, Gastroenterology clinics of North America.

[1649]  T. Bliss,et al.  Long‐lasting potentiation of synaptic transmission in the dentate area of the anaesthetized rabbit following stimulation of the perforant path , 1973, The Journal of physiology.

[1650]  A. Castillo-Ruiz,et al.  Birth delivery mode alters perinatal cell death in the mouse brain , 2018, Proceedings of the National Academy of Sciences.

[1651]  B. Bonaz,et al.  Irritable bowel syndrome: a model of the brain-gut interactions. , 2004, Medical science monitor : international medical journal of experimental and clinical research.

[1652]  Y. Belkaid,et al.  Role of the Microbiota in Immunity and Inflammation , 2014, Cell.

[1653]  T. Dinan,et al.  Gutsy Moves: The Amygdala as a Critical Node in Microbiota to Brain Signaling , 2018, BioEssays : news and reviews in molecular, cellular and developmental biology.

[1654]  Y. Calmus,et al.  Shaping macrophages function and innate immunity by bile acids: mechanisms and implication in cholestatic liver diseases. , 2014, Clinics and research in hepatology and gastroenterology.

[1655]  Emeran A. Mayer,et al.  Gut feelings: the emerging biology of gut–brain communication , 2011, Nature Reviews Neuroscience.

[1656]  J. Hoffman,et al.  Serotonin signalling in the gut—functions, dysfunctions and therapeutic targets , 2013, Nature Reviews Gastroenterology &Hepatology.

[1657]  H. Nagashima,et al.  High-resolution nuclear magnetic resonance spectroscopic study of metabolites in the cerebrospinal fluid of patients with cervical myelopathy and lumbar radiculopathy , 2010, European Spine Journal.

[1658]  Jian Peng,et al.  Supplementation of branched-chain amino acids to a reduced-protein diet improves growth performance in piglets: involvement of increased feed intake and direct muscle growth-promoting effect. , 2016, The British journal of nutrition.

[1659]  T. Spector,et al.  Signatures of early frailty in the gut microbiota , 2016, Genome Medicine.

[1660]  Dysbiosis contributes to chronic constipation development via regulation of serotonin transporter in the intestine , 2017, Scientific Reports.

[1661]  Yongzhi Yang,et al.  Micro Integral Membrane Protein (MIMP), a Newly Discovered Anti-Inflammatory Protein of Lactobacillus Plantarum, Enhances the Gut Barrier and Modulates Microbiota and Inflammatory Cytokines , 2018, Cellular Physiology and Biochemistry.

[1662]  C. Huttenhower,et al.  Expansion of intestinal Prevotella copri correlates with enhanced susceptibility to arthritis , 2013, eLife.

[1663]  E. Kandel,et al.  Structural Components of Synaptic Plasticity and Memory Consolidation. , 2015, Cold Spring Harbor perspectives in biology.

[1664]  S. Dowell,et al.  The Orphan G Protein-coupled Receptors GPR41 and GPR43 Are Activated by Propionate and Other Short Chain Carboxylic Acids* , 2003, The Journal of Biological Chemistry.

[1665]  L. Wen,et al.  The role of gut microbiota in the development of type 1, type 2 diabetes mellitus and obesity , 2015, Reviews in Endocrine and Metabolic Disorders.

[1666]  P. Scully,et al.  Disturbance of the gut microbiota in early-life selectively affects visceral pain in adulthood without impacting cognitive or anxiety-related behaviors in male rats , 2014, Neuroscience.

[1667]  M. Fagiolini,et al.  A Diet With Docosahexaenoic and Arachidonic Acids as the Sole Source of Polyunsaturated Fatty Acids Is Sufficient to Support Visual, Cognitive, Motor, and Social Development in Mice , 2019, Front. Neurosci..

[1668]  E. Distrutti,et al.  Probiotics VSL#3 Protect against Development of Visceral Pain in Murine Model of Irritable Bowel Syndrome , 2013, PloS one.

[1669]  Rob Knight,et al.  High-fat diet determines the composition of the murine gut microbiome independently of obesity. , 2009, Gastroenterology.

[1670]  C. Akdis,et al.  Histamine receptor 2 is a key influence in immune responses to intestinal histamine-secreting microbes. , 2014, The Journal of allergy and clinical immunology.

[1671]  M. Pusceddu,et al.  Visceral pain: gut microbiota, a new hope? , 2018, Journal of Biomedical Science.

[1672]  L. Kheirandish-Gozal,et al.  Lipopolysaccharide-binding protein plasma levels in children: effects of obstructive sleep apnea and obesity. , 2014, The Journal of clinical endocrinology and metabolism.

[1673]  M. Horowitz,et al.  Ghrelin, CCK, GLP-1, and PYY(3-36): Secretory Controls and Physiological Roles in Eating and Glycemia in Health, Obesity, and After RYGB. , 2017, Physiological reviews.

[1674]  G. Fink,et al.  Calorie restriction extends Saccharomyces cerevisiae lifespan by increasing respiration , 2002, Nature.

[1675]  E. Segal,et al.  Potential roles of gut microbiome and metabolites in modulating ALS in mice , 2019, Nature.

[1676]  P. Turnbaugh,et al.  Xenobiotics Shape the Physiology and Gene Expression of the Active Human Gut Microbiome , 2013, Cell.

[1677]  John-Paul J. Yu,et al.  Gut microbiome populations are associated with structure-specific changes in white matter architecture , 2018, Translational Psychiatry.

[1678]  K. Kristiansen,et al.  Links between Dietary Protein Sources, the Gut Microbiota, and Obesity , 2017, Front. Physiol..

[1679]  T. Dinan,et al.  Microbes & neurodevelopment – Absence of microbiota during early life increases activity-related transcriptional pathways in the amygdala , 2015, Brain, Behavior, and Immunity.

[1680]  Rob Knight,et al.  Defining the human microbiome. , 2012, Nutrition reviews.

[1681]  F. Fernández-Aranda,et al.  Gut Microbiota Interacts With Brain Microstructure and Function. , 2015, The Journal of clinical endocrinology and metabolism.

[1682]  A. Jayaraman,et al.  The bacterial signal indole increases epithelial-cell tight-junction resistance and attenuates indicators of inflammation , 2009, Proceedings of the National Academy of Sciences.

[1683]  K. Ondičová,et al.  Subdiaphragmatic vagotomy enhances stress-induced epinephrine release in rats , 2015, Autonomic Neuroscience.

[1684]  T. Dinan,et al.  Collective unconscious: how gut microbes shape human behavior. , 2015, Journal of psychiatric research.

[1685]  S. Ng,et al.  Smokers with active Crohn's disease have a clinically relevant dysbiosis of the gastrointestinal microbiota* , 2012, Inflammatory bowel diseases.

[1686]  H. Edlund,et al.  Gpr40 Is Expressed in Enteroendocrine Cells and Mediates Free Fatty Acid Stimulation of Incretin Secretion , 2008, Diabetes.