Measuring Genome Divergence in Bacteria: A Case Study Using Chlamydian Data
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Niklas Eriksen | S. Andersson | D. Dalevi | Daniel A. Dalevi | Kimmo Eriksson | Siv G.E. Andersson | N. Eriksen | K. Eriksson
[1] W. Ewens,et al. The chromosome inversion problem , 1982 .
[2] W. Doolittle,et al. Phylogenetic classification and the universal tree. , 1999, Science.
[3] N. Sueoka. On the genetic basis of variation and heterogeneity of DNA base composition. , 1962, Proceedings of the National Academy of Sciences of the United States of America.
[4] Sean D. Hooper,et al. Detection of Genes with Atypical Nucleotide Sequence in Microbial Genomes , 2002, Journal of Molecular Evolution.
[5] C. Kurland,et al. Reductive evolution of resident genomes. , 1998, Trends in microbiology.
[6] S. Salzberg,et al. Genome sequences of Chlamydia trachomatis MoPn and Chlamydia pneumoniae AR39. , 2000, Nucleic acids research.
[7] H. Ochman,et al. Lateral gene transfer and the nature of bacterial innovation , 2000, Nature.
[8] M. Hattori,et al. Comparison of whole genome sequences of Chlamydia pneumoniae J138 from Japan and CWL029 from USA. , 2000, Nucleic acids research.
[9] D. Sankoff,et al. Gene order comparisons for phylogenetic inference: evolution of the mitochondrial genome. , 1992, Proceedings of the National Academy of Sciences of the United States of America.
[10] A. Danchin,et al. Ongoing evolution of strand composition in bacterial genomes. , 2001, Molecular biology and evolution.
[11] Richard A. Johnson,et al. Applied Multivariate Statistical Analysis , 1983 .
[12] J. Andersson,et al. Pseudogenes, junk DNA, and the dynamics of Rickettsia genomes. , 2001, Molecular biology and evolution.
[13] E. Dudewicz,et al. Modern Mathematical Statistics. , 1990 .
[14] D. Sankoff,et al. Gene Order Breakpoint Evidence in Animal Mitochondrial Phylogeny , 1999, Journal of Molecular Evolution.
[15] T. Sicheritz-Pontén,et al. A phylogenomic approach to microbial evolution. , 2001, Nucleic acids research.
[16] E. Tillier,et al. Genome rearrangement by replication-directed translocation , 2000, Nature Genetics.
[17] H. Romero,et al. Codon usage in Chlamydia trachomatis is the result of strand-specific mutational biases and a complex pattern of selective forces. , 2000, Nucleic acids research.
[18] R. W. Davis,et al. Genome sequence of an obligate intracellular pathogen of humans: Chlamydia trachomatis. , 1998, Science.
[19] H. Ochman,et al. Amelioration of Bacterial Genomes: Rates of Change and Exchange , 1997, Journal of Molecular Evolution.
[20] Blanchette,et al. Phylogenetic Invariants for Metazoan Mitochondrial Genome Evolution. , 1998, Genome informatics. Workshop on Genome Informatics.
[21] C. Kurland. Something for everyone , 2000, EMBO reports.
[22] L. Koski,et al. Codon bias and base composition are poor indicators of horizontally transferred genes. , 2001, Molecular biology and evolution.
[23] E. Tillier,et al. The Contributions of Replication Orientation, Gene Direction, and Signal Sequences to Base-Composition Asymmetries in Bacterial Genomes , 2000, Journal of Molecular Evolution.