Filtering transcriptional noise during development: concepts and mechanisms
暂无分享,去创建一个
[1] Andrew P McMahon,et al. A mitogen gradient of dorsal midline Wnts organizes growth in the CNS. , 2002, Development.
[2] J. Ferrell. Self-perpetuating states in signal transduction: positive feedback, double-negative feedback and bistability. , 2002, Current opinion in cell biology.
[3] S. Leibler,et al. Establishment of developmental precision and proportions in the early Drosophila embryo , 2002, Nature.
[4] Randall T Moon,et al. A second canon. Functions and mechanisms of beta-catenin-independent Wnt signaling. , 2003, Developmental cell.
[5] Lewis Wolpert,et al. Principles of Development , 1997 .
[6] G. Odell,et al. Robustness, Flexibility, and the Role of Lateral Inhibition in the Neurogenic Network , 2002, Current Biology.
[7] S. Shen-Orr,et al. Network motifs: simple building blocks of complex networks. , 2002, Science.
[8] Mads Kærn,et al. Noise in eukaryotic gene expression , 2003, Nature.
[9] J. Gurdon,et al. A community effect in animal development , 1988, Nature.
[10] P. Maini,et al. Pattern formation by lateral inhibition with feedback: a mathematical model of delta-notch intercellular signalling. , 1996, Journal of theoretical biology.
[11] Christian Wehrle,et al. Wnt3a plays a major role in the segmentation clock controlling somitogenesis. , 2003, Developmental cell.
[12] C. Nüsslein-Volhard,et al. A gradient of bicoid protein in Drosophila embryos , 1988, Cell.
[13] J Galceran,et al. Rescue of a Wnt mutation by an activated form of LEF-1: Regulation of maintenance but not initiation of Brachyury expression , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[14] T. Klein,et al. The vestigial gene product provides a molecular context for the interpretation of signals during the development of the wing in Drosophila. , 1999, Development.
[15] J. Gurdon,et al. A community effect in muscle development , 1993, Current Biology.
[16] J. Modolell,et al. Different contributions of pannier and wingless to the patterning of the dorsal mesothorax of Drosophila. , 1999, Development.
[17] S. Cohen,et al. Problems and paradigms: Morphogens and pattern formation , 1997 .
[18] Alfonso Martinez Arias,et al. Armadillo/β-catenin-dependent Wnt signalling is required for the polarisation of epidermal cells during dorsal closure in Drosophila , 2004, Development.
[19] H. Clevers,et al. Wnt signalling in stem cells and cancer , 2005, Nature.
[20] Xi C. He,et al. Transcriptional accessibility for genes of multiple tissues and hematopoietic lineages is hierarchically controlled during early hematopoiesis. , 2003, Blood.
[21] N. Perrimon,et al. Functional Genomic Analysis of the Wnt-Wingless Signaling Pathway , 2005, Science.
[22] Scott Barolo,et al. Three habits of highly effective signaling pathways: principles of transcriptional control by developmental cell signaling. , 2002, Genes & development.
[23] Xi He,et al. Coactivation of Rac and Rho by Wnt/Frizzled signaling is required for vertebrate gastrulation. , 2003, Genes & development.
[24] David M. Holloway,et al. Making the body plan: Precision in the genetic hierarchy of Drosophila embryo segmentation , 2003, Silico Biol..
[25] Anjen Chenn,et al. Regulation of Cerebral Cortical Size by Control of Cell Cycle Exit in Neural Precursors , 2002, Science.
[26] Julian Lewis. Autoinhibition with Transcriptional Delay A Simple Mechanism for the Zebrafish Somitogenesis Oscillator , 2003, Current Biology.
[27] N. Perrimon,et al. Notch modulates Wnt signalling by associating with Armadillo/β-catenin and regulating its transcriptional activity , 2005, Development.
[28] Keith Brennan,et al. CSL-independent Notch signalling: a checkpoint in cell fate decisions during development? , 2002, Current opinion in genetics & development.
[29] K. Sachs,et al. Causal Protein-Signaling Networks Derived from Multiparameter Single-Cell Data , 2005, Science.
[30] Alfonso Martinez Arias,et al. Molecular Principles of Animal Development , 2002 .
[31] Jeffrey D. Axelrod,et al. A Second Canon , 2003 .
[32] R. Tjian,et al. Transcription regulation and animal diversity , 2003, Nature.
[33] R. Milo,et al. Network motifs in integrated cellular networks of transcription-regulation and protein-protein interaction. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[34] L. Hood,et al. A Genomic Regulatory Network for Development , 2002, Science.
[35] L. Hood,et al. Regulatory gene networks and the properties of the developmental process , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[36] G. Schubiger,et al. Transdetermination in Drosophila imaginal discs: a model for understanding pluripotency and selector gene maintenance. , 2003, Current opinion in genetics & development.
[37] Rustem F. Ismagilov,et al. Dynamics of Drosophila embryonic patterning network perturbed in space and time using microfluidics , 2005, Nature.
[38] Hans Clevers,et al. Caught up in a Wnt storm: Wnt signaling in cancer. , 2003, Biochimica et biophysica acta.
[39] Robert Geisler,et al. Silberblick/Wnt11 mediates convergent extension movements during zebrafish gastrulation , 2000, Nature.
[40] Michael Levine,et al. Whole-genome analysis of Drosophila gastrulation. , 2004, Current opinion in genetics & development.
[41] B. de Strooper,et al. Analysis of Notch function in presomitic mesoderm suggests a gamma-secretase-independent role for presenilins in somite differentiation. , 2005, Developmental cell.
[42] J. Paulsson. Summing up the noise in gene networks , 2004, Nature.
[43] D. Mccormick. Sequence the Human Genome , 1986, Bio/Technology.
[44] C. Pesce,et al. Regulated cell-to-cell variation in a cell-fate decision system , 2005, Nature.
[45] R. Moon,et al. The Wnt/Ca2+ pathway: a new vertebrate Wnt signaling pathway takes shape. , 2000, Trends in genetics : TIG.
[46] J. Gurdon,et al. eFGF and its mode of action in the community effect during Xenopus myogenesis. , 2001, Development.
[47] Nicola J. Rinaldi,et al. Transcriptional Regulatory Networks in Saccharomyces cerevisiae , 2002, Science.
[48] S Cohen,et al. Morphogens and pattern formation. , 1997, BioEssays : news and reviews in molecular, cellular and developmental biology.
[49] Judith A. Kassis,et al. Two-tiered regulation of spatially patterned engrailed gene expression during Drosophila embryogenesis , 1988, Nature.
[50] C. Nüsslein-Volhard,et al. The bicoid protein determines position in the Drosophila embryo in a concentration-dependent manner , 1988, Cell.
[51] Farren J. Isaacs,et al. Prediction and measurement of an autoregulatory genetic module , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[52] Alfonso Martinez Arias,et al. Repression by Notch is required before Wingless signalling during muscle progenitor cell development in Drosophila , 1999, Current Biology.
[53] P. Swain,et al. Gene Regulation at the Single-Cell Level , 2005, Science.
[54] A. Martinez Arias,et al. The Informational Content of Gradients of Wnt Proteins , 2000, Science's STKE.
[55] S. Shen-Orr,et al. Network motifs in the transcriptional regulation network of Escherichia coli , 2002, Nature Genetics.
[56] K. White,et al. Patterns of Gene Expression During Drosophila Mesoderm Development , 2001, Science.
[57] S. Fiering,et al. To be or not to be active: the stochastic nature of enhancer action. , 2000, BioEssays : news and reviews in molecular, cellular and developmental biology.
[58] Farren J. Isaacs,et al. Signal Processing in Single Cells , 2005, Science.
[59] M. Greaves,et al. Multilineage gene expression precedes commitment in the hemopoietic system. , 1997, Genes & development.
[60] E. Davidson,et al. Gene regulatory networks for development. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[61] F. Schweisguth,et al. Regulation of Notch Signaling Activity , 2004, Current Biology.
[62] J. V. Moran,et al. Initial sequencing and analysis of the human genome. , 2001, Nature.
[63] S Wan,et al. Multiple signalling pathways establish cell fate and cell number in Drosophila malpighian tubules. , 2000, Developmental biology.
[64] B. van Steensel,et al. Mapping of genetic and epigenetic regulatory networks using microarrays. , 2005, Nature genetics.
[65] A. Martinez Arias,et al. Roles of wingless in patterning the larval epidermis of Drosophila. , 1991, Development.
[66] E. Davidson,et al. Modeling transcriptional regulatory networks. , 2002, BioEssays : news and reviews in molecular, cellular and developmental biology.
[67] J. Raser,et al. Control of Stochasticity in Eukaryotic Gene Expression , 2004, Science.
[68] Sudhir Kumar,et al. Comparative Genomics in Eukaryotes , 2005 .
[69] Elaine Fuchs,et al. Defining the impact of beta-catenin/Tcf transactivation on epithelial stem cells. , 2005, Genes & development.
[70] C. Rao,et al. Control, exploitation and tolerance of intracellular noise , 2002, Nature.
[71] J. Treisman,et al. Osa-containing Brahma chromatin remodeling complexes are required for the repression of wingless target genes. , 2000, Genes & development.
[72] M. Baylies,et al. Specification of individual Slouch muscle progenitors in Drosophila requires sequential Wingless signaling , 2005, Development.
[73] M. Ptashne. A genetic switch : phage λ and higher organisms , 1992 .
[74] A. Martinez Arias,et al. Wnts as morphogens? The view from the wing of Drosophila , 2003, Nature reviews. Molecular cell biology.
[75] J. Gergen,et al. Distinct in vivo requirements for establishment versus maintenance of transcriptional repression , 2002, Nature Genetics.
[76] Jonathan M Irish,et al. Single Cell Profiling of Potentiated Phospho-Protein Networks in Cancer Cells , 2004, Cell.
[77] Daniel St Johnston,et al. Seeing Is Believing The Bicoid Morphogen Gradient Matures , 2004, Cell.
[78] A. van Oudenaarden,et al. Noise Propagation in Gene Networks , 2005, Science.
[79] J. Whangbo,et al. A Wnt signaling system that specifies two patterns of cell migration in C. elegans. , 1999, Molecular cell.
[80] M Laurent,et al. Multistability: a major means of differentiation and evolution in biological systems. , 1999, Trends in biochemical sciences.
[81] Carmen Birchmeier,et al. beta-Catenin signals regulate cell growth and the balance between progenitor cell expansion and differentiation in the nervous system. , 2003, Developmental biology.
[82] E. Davidson. Genomic Regulatory Systems: Development and Evolution , 2005 .
[83] N E Baker,et al. Role of segment polarity genes in the definition and maintenance of cell states in the Drosophila embryo. , 1988, Development.
[84] M. Elowitz,et al. Combinatorial Synthesis of Genetic Networks , 2002, Science.
[85] M. Gerstein,et al. Structure and evolution of transcriptional regulatory networks. , 2004, Current opinion in structural biology.
[86] R. Nusse,et al. The Wnt signaling pathway in development and disease. , 2004, Annual review of cell and developmental biology.
[87] A. Oudenaarden,et al. Enhancement of cellular memory by reducing stochastic transitions , 2005, Nature.
[88] Elaine Fuchs,et al. Defining the impact of (cid:1) -catenin/Tcf transactivation on epithelial stem cells , 2005 .
[89] P. Swain,et al. Stochastic Gene Expression in a Single Cell , 2002, Science.
[90] R. Weiss,et al. Ultrasensitivity and noise propagation in a synthetic transcriptional cascade. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[91] M. Groudine,et al. Enhancers increase the probability but not the level of gene expression. , 1995, Proceedings of the National Academy of Sciences of the United States of America.
[92] T. Elston,et al. Stochasticity in gene expression: from theories to phenotypes , 2005, Nature Reviews Genetics.
[93] M. Bate,et al. wingless is required for the formation of a subset of muscle founder cells during Drosophila embryogenesis. , 1995, Development.