Comparative Genomic Evidence for a Close Relationship between the Dimorphic Prosthecate Bacteria Hyphomonas neptunium and Caulobacter crescentus
暂无分享,去创建一个
D. Radune | J. Mrázek | M. Laub | J. Badger | D. Haft | K. Nelson | I. Paulsen | J. Selengut | T. Davidsen | M. J. Rosovitz | N. Ward | S. Daugherty | L. Brinkac | R. Madupu | R. Dodson | H. Khouri | M. Giglio | A. S. Durkin | S. Sullivan | Liwei Zhou | Y. Brun | Q. Ren | R. Weiner | G. Alexandre | T. Hoover | N. Zafar | J. Sosa | Sean C. Daugherty | Sagar P Kothari | Qi Yang | Sagar P. Kothari | Nikhat Zafar | Stephen A Sullivan | Karen E. Nelson | Ian T. Paulsen | Naomi L. Ward | Tanja M. Davidsen | Jonathan H. Badger | Timothy R. Hoover | Yves V. Brun | R. Weiner | Michael T. Laub | Michelle Gwinn Giglio
[1] E. Birney,et al. Pfam: the protein families database , 2013, Nucleic Acids Res..
[2] Jeffrey M. Skerker,et al. A phosphorelay system controls stalk biogenesis during cell cycle progression in Caulobacter crescentus , 2006, Molecular microbiology.
[3] J. Poindexter. Dimorphic Prosthecate Bacteria: The Genera Caulobacter, Asticcacaulis, Hyphomicrobium, Pedomicrobium, Hyphomonas and Thiodendron , 2006 .
[4] A. Nordheim,et al. ExbBD-Dependent Transport of Maltodextrins through the Novel MalA Protein across the Outer Membrane of Caulobacter crescentus , 2005, Journal of bacteriology.
[5] Michael T Laub,et al. Two-Component Signal Transduction Pathways Regulating Growth and Cell Cycle Progression in a Bacterium: A System-Level Analysis , 2005, PLoS biology.
[6] Kyung-Bum Lee,et al. The hierarchical system of the 'Alphaproteobacteria': description of Hyphomonadaceae fam. nov., Xanthobacteraceae fam. nov. and Erythrobacteraceae fam. nov. , 2005, International journal of systematic and evolutionary microbiology.
[7] Ian T. Paulsen,et al. Comparative Analyses of Fundamental Differences in Membrane Transport Capabilities in Prokaryotes and Eukaryotes , 2005, PLoS Comput. Biol..
[8] Damon A. Clark,et al. The bacterial chemotactic response reflects a compromise between transient and steady-state behavior. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[9] K. Gerdes,et al. Prokaryotic toxin–antitoxin stress response loci , 2005, Nature Reviews Microbiology.
[10] François Taddei,et al. Aging and Death in an Organism That Reproduces by Morphologically Symmetric Division , 2005, PLoS Biology.
[11] Owen White,et al. Genome Properties: a system for the investigation of prokaryotic genetic content for microbiology, genome annotation and comparative genomics , 2005, Bioinform..
[12] Jay X. Tang,et al. The Elastic Properties of the Caulobacter crescentus Adhesive Holdfast Are Dependent on Oligomers of N-Acetylglucosamine , 2005, Journal of bacteriology.
[13] E. Leifson. Hyphomicrobium neptunium sp. n. , 2005, Antonie van Leeuwenhoek.
[14] Ian T. Paulsen,et al. Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment , 2004, Nature.
[15] A. Bairoch,et al. The Swiss-Prot protein knowledgebase and ExPASy: providing the plant community with high quality proteomic data and tools. , 2004, Plant physiology and biochemistry : PPB.
[16] J. Gober,et al. Regulation of FlbD activity by flagellum assembly is accomplished through direct interaction with the trans‐acting factor, FliX , 2004, Molecular microbiology.
[17] Paul G. Falkowski,et al. The demise of the marine cyanobacterium, Trichodesmium spp., via an autocatalyzed cell death pathway , 2004 .
[18] Michael T. Laub,et al. Cell-cycle progression and the generation of asymmetry in Caulobacter crescentus , 2004, Nature Reviews Microbiology.
[19] Y. Brun,et al. Development of Surface Adhesion in Caulobacter crescentus , 2004, Journal of bacteriology.
[20] Robert C. Edgar,et al. MUSCLE: multiple sequence alignment with high accuracy and high throughput. , 2004, Nucleic acids research.
[21] H. Engelberg-Kulka,et al. Bacterial programmed cell death systems as targets for antibiotics. , 2004, Trends in microbiology.
[22] Ian T. Paulsen,et al. TransportDB: a relational database of cellular membrane transport systems , 2004, Nucleic Acids Res..
[23] H. Berg. The rotary motor of bacterial flagella. , 2003, Annual review of biochemistry.
[24] C. Jacobs-Wagner,et al. Spatial and temporal control of differentiation and cell cycle progression in Caulobacter crescentus. , 2003, Annual review of microbiology.
[25] Finbarr Hayes,et al. Toxins-Antitoxins: Plasmid Maintenance, Programmed Cell Death, and Cell Cycle Arrest , 2003, Science.
[26] Y. Brun,et al. The HfaB and HfaD adhesion proteins of Caulobacter crescentus are localized in the stalk , 2003, Molecular microbiology.
[27] K. Borzym,et al. Complete genome sequence of the marine planctomycete Pirellula sp. strain 1 , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[28] Martin Ackermann,et al. Senescence in a Bacterium with Asymmetric Division , 2003, Science.
[29] T. Nyström. Conditional senescence in bacteria: death of the immortals , 2003, Molecular microbiology.
[30] D. Larson,et al. Identification of Genes Required for Synthesis of the Adhesive Holdfast in Caulobacter crescentus , 2003, Journal of bacteriology.
[31] Alex Bateman,et al. QuickTree: building huge Neighbour-Joining trees of protein sequences , 2002, Bioinform..
[32] Ingeborg Holt,et al. The complete genome sequence of Chlorobium tepidum TLS, a photosynthetic, anaerobic, green-sulfur bacterium , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[33] D. Kelly,et al. The prokaryotes: an evolving electronic resource for the microbiological community - , 2002 .
[34] P. Garrigues. Biomarkers in Marine Organisms: A Practical Approach , 2001 .
[35] S. Salzberg,et al. Complete Genome Sequence of a Virulent Isolate of Streptococcus pneumoniae , 2001, Science.
[36] Ian T. Paulsen,et al. Complete genome sequence of Caulobacter crescentus , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[37] T. Sicheritz-Pontén,et al. A phylogenomic approach to microbial evolution. , 2001, Nucleic acids research.
[38] P. Garrigues,et al. BIOCHEMICAL MARKERS IN MUSSEL, MYTILUS SP., AND POLLUTION MONITORING IN EUROPEAN COASTS : DATA ANALYSIS , 2001 .
[39] H. McAdams,et al. Global analysis of the genetic network controlling a bacterial cell cycle. , 2000, Science.
[40] Igor B. Zhulin,et al. Energy Taxis Is the Dominant Behavior in Azospirillum brasilense , 2000, Journal of bacteriology.
[41] K. Lewis,et al. Programmed Death in Bacteria , 2000, Microbiology and Molecular Biology Reviews.
[42] S. Langille,et al. Polysaccharide-specific probes inhibit adhesion of Hyphomonas rosenbergii strain VP-6 to hydrophilic surfaces , 2000, Journal of Industrial Microbiology and Biotechnology.
[43] M. Saier. A Functional-Phylogenetic Classification System for Transmembrane Solute Transporters , 2000, Microbiology and Molecular Biology Reviews.
[44] A. Matin,et al. The G‐protein FlhF has a role in polar flagellar placement and general stress response induction in Pseudomonas putida , 2000, Molecular microbiology.
[45] R. Weiner,et al. Hyphomonas adhaerens sp. nov., Hyphomonas johnsonii sp. nov. and Hyphomonas rosenbergii sp. nov., marine budding and prosthecate bacteria. , 2000, International journal of systematic and evolutionary microbiology.
[46] R. Ramphal,et al. fleN, a Gene That Regulates Flagellar Number in Pseudomonas aeruginosa , 2000, Journal of bacteriology.
[47] A. Newton,et al. Signal Transduction and Cell Cycle Checkpoints in Developmental Regulation of Caulobacter , 2000 .
[48] S. Salzberg,et al. Improved microbial gene identification with GLIMMER. , 1999, Nucleic acids research.
[49] M. Moran,et al. Transformation of Sulfur Compounds by an Abundant Lineage of Marine Bacteria in the α-Subclass of the ClassProteobacteria , 1999, Applied and Environmental Microbiology.
[50] Stefan Kurtz,et al. REPuter: fast computation of maximal repeats in complete genomes , 1999, Bioinform..
[51] Lucy Shapiro,et al. The CtrA Response Regulator Mediates Temporal Control of Gene Expression during the Caulobacter Cell Cycle , 1999, Journal of bacteriology.
[52] D. Eisenberg,et al. Assigning protein functions by comparative genome analysis: protein phylogenetic profiles. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[53] I. Zhulin,et al. Aerotaxis and other energy-sensing behavior in bacteria. , 1999, Annual review of microbiology.
[54] S. Langille,et al. Spatial and Temporal Deposition ofHyphomonas Strain VP-6 Capsules Involved in Biofilm Formation , 1998, Applied and Environmental Microbiology.
[55] R. Weiner,et al. Spatial and Temporal Deposition of Adhesive Extracellular Polysaccharide Capsule and Fimbriae byHyphomonas Strain MHS-3 , 1998, Applied and Environmental Microbiology.
[56] R. Huber,et al. The complete genome of the hyperthermophilic bacterium Aquifex aeolicus , 1998, Nature.
[57] A. Newton,et al. Regulation of the Caulobacter flagellar gene hierarchy; not just for motility , 1997, Molecular microbiology.
[58] M. Kessel,et al. Fine-structure evidence for cell membrane partitioning of the nucleoid and cytoplasm during bud formation in Hyphomonas species , 1997, Journal of bacteriology.
[59] M. Otte,et al. Organism-induced accumulation of iron, zinc and arsenic in wetland soils. , 1997, Environmental pollution.
[60] S. Karlin,et al. Frequent oligonucleotides and peptides of the Haemophilus influenzae genome. , 1996, Nucleic acids research.
[61] I. Zhulin,et al. Oxygen taxis and proton motive force in Azospirillum brasilense , 1996, Journal of bacteriology.
[62] Lucy Shapiro,et al. Cell Cycle Control by an Essential Bacterial Two-Component Signal Transduction Protein , 1996, Cell.
[63] R. Macnab,et al. Flagella and motility , 1996 .
[64] A. Benson,et al. Global regulation of a sigma 54-dependent flagellar gene family in Caulobacter crescentus by the transcriptional activator FlbD , 1995, Journal of bacteriology.
[65] R. Weiner,et al. Evidence for the Adhesive Function of the Exopolysaccharide of Hyphomonas Strain MHS-3 in Its Attachment to Surfaces , 1995, Applied and environmental microbiology.
[66] P. Matsumura,et al. Chemotactic Signal Transduction in Escherichia coli and Salmonella typhimurium , 1995 .
[67] J. Hoch,et al. Two-component signal transduction , 1995 .
[68] D. Mullin,et al. FlbD has a DNA-binding activity near its carboxy terminus that recognizes ftr sequences involved in positive and negative regulation of flagellar gene transcription in Caulobacter crescentus , 1994, Journal of bacteriology.
[69] A. Ninfa,et al. The Caulobacter crescentus FlbD protein acts at ftr sequence elements both to activate and to repress transcription of cell cycle-regulated flagellar genes. , 1994, Proceedings of the National Academy of Sciences of the United States of America.
[70] J. Wingrove,et al. Spatial and temporal phosphorylation of a transcriptional activator regulates pole-specific gene expression in Caulobacter. , 1993, Genes & development.
[71] L. Shapiro,et al. A temporally controlled sigma-factor is required for polar morphogenesis and normal cell division in Caulobacter. , 1992, Genes & development.
[72] R. Haas,et al. Cloning and genetic characterization of a Hellcobacter pylori flagellin gene , 1992, Molecular microbiology.
[73] Amir Dembo,et al. Poisson Approximations for $r$-Scan Processes , 1992 .
[74] S. Lory,et al. The filA (rpoF) gene of Pseudomonas aeruginosa encodes an alternative sigma factor required for flagellin synthesis , 1992, Molecular microbiology.
[75] H. Kurtz,et al. Analysis of a Caulobacter crescentus gene cluster involved in attachment of the holdfast to the cell , 1992, Journal of bacteriology.
[76] A. Newton,et al. FlbD of Caulobacter crescentus is a homologue of the NtrC (NRI) protein and activates sigma 54-dependent flagellar gene promoters. , 1990, Proceedings of the National Academy of Sciences of the United States of America.
[77] Y. Ohya,et al. Transcriptional analysis of the flagellar regulon of Salmonella typhimurium , 1990, Journal of bacteriology.
[78] R. Weiner,et al. Hyphomonas species metabolise amino acids using Krebs cycle enzyme , 1990 .
[79] J. Smit,et al. Characterization of the Adhesive Holdfast of Marine and Freshwater Caulobacters , 1988, Applied and environmental microbiology.
[80] T. Leisinger,et al. Methyl Chloride: Naturally Occurring Toxicant and C-1 Growth Substrate , 1986 .
[81] R. Weiner,et al. Notes: Genus Hyphomonas Pongratz 1957 nom. rev. emend., Hyphomonas polymorpha Pongratz 1957 nom. rev. emend., and Hyphomonas neptunium (Leifson 1964) comb. nov. emend. (Hyphomicrobium neptunium) , 1984 .
[82] R. Baier,et al. Surface Microfouling During the Induction Period , 1983 .
[83] R. Weiner,et al. Modulation of Adenylate Energy Charge During the Swarmer Cycle of Hyphomicrobium neptunium , 1983, Journal of bacteriology.
[84] J. Köhler,et al. Oxidation of aromatic aldehydes and aliphatic secondary alcohols by Hyphomicrobium spp. , 1982 .
[85] R. L. Moore. The biology of Hyphomicrobium and other prosthecate, budding bacteria. , 1981, Annual review of microbiology.
[86] R. Weiner,et al. Timing of swarmer cell cycle morphogenesis and macromolecular synthesis by Hyphomicrobium neptunium in synchronous culture , 1980, Journal of bacteriology.
[87] C. Dow,et al. Morphogenesis and differentiation in Rhodomicrobium vannielii and other budding and prosthecate bacteria. , 1977, Bacteriological reviews.
[88] D. Koshland,et al. Identification of a protein methyltransferase as the cheR gene product in the bacterial sensing system. , 1977, Proceedings of the National Academy of Sciences of the United States of America.
[89] R. Weiner,et al. Photomicrography of nalidixic acid treated Hyphomicrobium neptunium: inhibition of bud formation and bud separation. , 1975, Canadian journal of microbiology.
[90] L. Shapiro,et al. Regulation of the Caulobacter cell cycle. , 1975, Current topics in cellular regulation.
[91] J. Adler,et al. Negative Chemotaxis in Escherichia coli , 1974, Journal of bacteriology.
[92] R. Weiner,et al. Inhibition of Deoxyribonucleic Acid Synthesis and Bud Formation by Nalidixic Acid in Hyphomicrobium neptunium , 1973, Journal of bacteriology.
[93] J. T. Staley. Prosthecomicrobium and Ancalomicrobium: New Prosthecate Freshwater Bacteria , 1968, Journal of bacteriology.
[94] J. Adler. Chemotaxis in Bacteria , 1966, Science.
[95] J. Poindexter. BIOLOGICAL PROPERTIES AND CLASSIFICATION OF THE CAULOBACTER GROUP , 1964, Bacteriological reviews.
[96] G. Zavarzin,et al. [Budding bacteria]. , 1961, Mikrobiologiia.