Evaluation of spiral acquisition variants for functional imaging of human superior colliculus at 3T field strength

High‐resolution functional magnetic resonance imaging of human subcortical brain structures is challenging because of their deep location in the cranium, and their comparatively weak blood oxygen level dependent responses to strong stimuli. Magnetic resonance imaging data for subcortical brain regions exhibit both low signal‐to‐noise ratio and low functional contrast‐to‐noise ratio. To overcome these challenges, this work evaluates the use of dual‐echo spiral variants that combine outward and inward trajectories. Specifically, in‐in, in‐out, and out‐out combinations are evaluated. For completeness, single‐echo spiral‐in and parallel‐receive‐accelerated echo‐planar‐imaging sequences are also evaluated.

[1]  Serge O Dumoulin,et al.  Measurement of population receptive fields in human early visual cortex using back-projection tomography. , 2014, Journal of vision.

[2]  Steen Moeller,et al.  Multiband multislice GE‐EPI at 7 tesla, with 16‐fold acceleration using partial parallel imaging with application to high spatial and temporal whole‐brain fMRI , 2010, Magnetic resonance in medicine.

[3]  G. Glover,et al.  Spiral‐in/out BOLD fMRI for increased SNR and reduced susceptibility artifacts , 2001, Magnetic resonance in medicine.

[4]  D. Larkman,et al.  Use of multicoil arrays for separation of signal from multiple slices simultaneously excited , 2001, Journal of magnetic resonance imaging : JMRI.

[5]  Robin M Heidemann,et al.  Controlled aliasing in parallel imaging results in higher acceleration (CAIPIRINHA) for multi‐slice imaging , 2005, Magnetic resonance in medicine.

[6]  Bénédicte M A Delattre,et al.  Spiral demystified. , 2010, Magnetic resonance imaging.

[7]  G. Glover,et al.  Physiological noise in oxygenation‐sensitive magnetic resonance imaging , 2001, Magnetic resonance in medicine.

[8]  J. Gore,et al.  Measurement of the point spread function in MRI using constant time imaging , 1997, Magnetic resonance in medicine.

[9]  Bharath Chandrasekaran,et al.  Tonotopic Organization in the Depth of Human Inferior Colliculus , 2013, Front. Hum. Neurosci..

[10]  David Ress,et al.  High-resolution functional magnetic resonance imaging methods for human midbrain. , 2012, Journal of visualized experiments : JoVE.

[11]  Gary H Glover,et al.  Improved combination of spiral‐in/out images for BOLD fMRI , 2004, Magnetic resonance in medicine.

[12]  Stephen M. Smith,et al.  Multiplexed Echo Planar Imaging for Sub-Second Whole Brain FMRI and Fast Diffusion Imaging , 2010, PloS one.

[13]  Essa Yacoub,et al.  Zoomed Functional Imaging in the Human Brain at 7 Tesla with Simultaneous High Spatial and High Temporal Resolution , 2002, NeuroImage.

[14]  Kevin DeSimone,et al.  Population Receptive Field Estimation Reveals New Retinotopic Maps in Human Subcortex , 2015, The Journal of Neuroscience.

[15]  David Ress,et al.  Topography of covert visual attention in human superior colliculus. , 2010, Journal of neurophysiology.

[16]  P Börnert,et al.  Reversed spiral MR imaging , 2000, Magnetic resonance in medicine.

[17]  David Hinkley,et al.  Bootstrap Methods: Another Look at the Jackknife , 2008 .

[18]  Jens Frahm,et al.  Spiral imaging: A critical appraisal , 2005, Journal of magnetic resonance imaging : JMRI.

[19]  Chandrajit L. Bajaj,et al.  Surface-based analysis methods for high-resolution functional magnetic resonance imaging , 2011, Graph. Model..

[20]  Yang Wang,et al.  Dual‐echo spiral in/in acquisition method for reducing magnetic susceptibility artifacts in blood‐oxygen‐level‐dependent functional magnetic resonance imaging , 2006, Magnetic resonance in medicine.

[21]  Alison R Preston,et al.  Comparison of spiral-in/out and spiral-out BOLD fMRI at 1.5 and 3 T , 2004, NeuroImage.

[22]  Guido Gerig,et al.  User-guided 3D active contour segmentation of anatomical structures: Significantly improved efficiency and reliability , 2006, NeuroImage.

[23]  Anders M. Dale,et al.  Cortical Surface-Based Analysis I. Segmentation and Surface Reconstruction , 1999, NeuroImage.

[24]  J. Polimeni,et al.  Blipped‐controlled aliasing in parallel imaging for simultaneous multislice echo planar imaging with reduced g‐factor penalty , 2012, Magnetic resonance in medicine.

[25]  Sabine Kastner,et al.  Effects of Sustained Spatial Attention in the Human Lateral Geniculate Nucleus and Superior Colliculus , 2009, The Journal of Neuroscience.

[26]  Gary H. Glover,et al.  Spiral imaging in fMRI , 2012, NeuroImage.

[27]  Mark S. Cohen,et al.  Spatiotopic Organization in Human Superior Colliculus Observed with fMRI , 2000, NeuroImage.

[28]  J. E. Albano,et al.  Visual-motor function of the primate superior colliculus. , 1980, Annual review of neuroscience.

[29]  B. Efron The jackknife, the bootstrap, and other resampling plans , 1987 .

[30]  Robert Tibshirani,et al.  An Introduction to the Bootstrap , 1994 .