Multi-layer fast level set segmentation for macular OCT

Segmenting optical coherence tomography (OCT) images of the retina is important in the diagnosis, staging, and tracking of ophthalmological diseases. Whereas automatic segmentation methods are typically much faster than manual segmentation, they may still take several minutes to segment a three-dimensional macular scan, and this can be prohibitive for routine clinical application. In this paper, we propose a fast, multi-layer macular OCT segmentation method based on a fast level set method. In our framework, the boundary evolution operations are computationally fast, are specific to each boundary between retinal layers, guarantee proper layer ordering, and avoid level set computation during evolution. Subvoxel resolution is achieved by reconstructing the level set functions after convergence. Experiments demonstrate that our method reduces the computation expense by 90% compared to graph-based methods and produces comparable accuracy to both graph-based and level set retinal OCT segmentation methods.

[1]  Aaron Carass,et al.  Multiple-object geometric deformable model for segmentation of macular OCT. , 2014, Biomedical optics express.

[2]  Xiaodong Wu,et al.  Automated 3-D Intraretinal Layer Segmentation of Macular Spectral-Domain Optical Coherence Tomography Images , 2009, IEEE Transactions on Medical Imaging.

[3]  Jan Kybic,et al.  Discrete curvature calculation for fast level set segmentation , 2009, 2009 16th IEEE International Conference on Image Processing (ICIP).

[4]  Yan Wang,et al.  A Generative Model for OCT Retinal Layer Segmentation by Integrating Graph-Based Multi-surface Searching and Image Registration , 2013, MICCAI.

[5]  Chong Wang,et al.  Automatic segmentation of nine retinal layer boundaries in OCT images of non-exudative AMD patients using deep learning and graph search. , 2017, Biomedical optics express.

[6]  J A Sethian,et al.  A fast marching level set method for monotonically advancing fronts. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[7]  C. Crainiceanu,et al.  Microcystic macular oedema, thickness of the inner nuclear layer of the retina, and disease characteristics in multiple sclerosis: a retrospective study , 2012, The Lancet Neurology.

[8]  Boris Hermann,et al.  Robust segmentation of intraretinal layers in the normal human fovea using a novel statistical model based on texture and shape analysis. , 2010, Optics express.

[9]  J. Sethian,et al.  Fronts propagating with curvature-dependent speed: algorithms based on Hamilton-Jacobi formulations , 1988 .

[10]  Guillermo Sapiro,et al.  Minimal Surfaces Based Object Segmentation , 1997, IEEE Trans. Pattern Anal. Mach. Intell..

[11]  L. R. Dice Measures of the Amount of Ecologic Association Between Species , 1945 .

[12]  Alexander Wong,et al.  Intra-retinal layer segmentation in optical coherence tomography images. , 2009, Optics express.

[13]  Peter A. Calabresi,et al.  Segmentation of retinal OCT images using a random forest classifier , 2013, Medical Imaging.

[14]  Junaed Sattar Snakes , Shapes and Gradient Vector Flow , 2022 .

[15]  W. Clem Karl,et al.  A fast level set method without solving PDEs [image segmentation applications] , 2005, Proceedings. (ICASSP '05). IEEE International Conference on Acoustics, Speech, and Signal Processing, 2005..

[16]  Jerry L Prince,et al.  Retinal layer segmentation of macular OCT images using boundary classification , 2013, Biomedical optics express.