Current and emerging tools for the recovery of genetic information from post mortem samples: New directions for disaster victim identification.

DNA profiling has emerged as the gold standard for the identification of victims in mass disaster events providing an ability to identify victims, reassociate remains and provide investigative leads at a relatively low cost, and with a high degree of discrimination. For the majority of samples, DNA-based identification can be achieved in a fast, streamlined and high-throughput manner. However, a large number of remains will be extremely compromised, characteristic of mass disasters. Advances in technology and in the field of forensic biology have increased the options for the collection, sampling, preservation and processing of samples for DNA profiling. Furthermore, recent developments now allow a vast array of new genetic markers and genotyping techniques to extract as much genetic information from a sample as possible, ensuring that identification is not only accurate but also possible where material is degraded, or limited. Where historically DNA profiling has involved comparison with ante mortem samples or relatives, now DNA profiling can direct investigators towards putative victims or relatives, for comparison through the determination of externally visible characteristics, or biogeographical ancestry. This paper reviews the current and emerging tools available for maximising the recovery of genetic information from post mortem samples in a disaster victim identification context.

[1]  R. Roy,et al.  Evaluation of Direct PCR Amplification Using Various Swabs and Washing Reagents , 2015, Journal of forensic sciences.

[2]  J. Dudar,et al.  Technical note: improved DNA extraction from ancient bones using silica-based spin columns. , 1998, American journal of physical anthropology.

[3]  S. Pääbo,et al.  Multiplexed DNA Sequence Capture of Mitochondrial Genomes Using PCR Products , 2010, PloS one.

[4]  R. Chakraborty,et al.  Development and validation of a novel multiplexed DNA analysis system, InnoTyper® 21. , 2017, Forensic science international. Genetics.

[5]  P. Zalewski,et al.  Ca2+/Mg(2+)-dependent nuclease: tissue distribution, relationship to inter-nucleosomal DNA fragmentation and inhibition by Zn2+. , 1991, Biochemical and biophysical research communications.

[6]  A. Marcsik,et al.  A simple and efficient method for PCR amplifiable DNA extraction from ancient bones. , 2000, Nucleic acids research.

[7]  D. Sweet INTERPOL DVI best-practice standards--An overview. , 2010, Forensic science international.

[8]  B. Budowle,et al.  A high volume extraction and purification method for recovering DNA from human bone. , 2014, Forensic science international. Genetics.

[9]  S Andelinović,et al.  DNA typing from skeletal remains: evaluation of multiplex and megaplex STR systems on DNA isolated from bone and teeth samples. , 2001, Croatian medical journal.

[10]  T. Parsons,et al.  Highly effective DNA extraction method for nuclear short tandem repeat testing of skeletal remains from mass graves. , 2007, Croatian Medical Journal.

[11]  H. Pfeiffer,et al.  Application of mtDNA SNP analysis in forensic casework. , 2011, Forensic science international. Genetics.

[12]  L. Harsányi Differential Diagnosis of Human and Animal Bone , 1993 .

[13]  Jeremy Heil,et al.  Human diallelic insertion/deletion polymorphisms. , 2002, American journal of human genetics.

[14]  K. Makino,et al.  Mechanistic studies on depurination and apurinic site chain breakage in oligodeoxyribonucleotides. , 1994, Nucleic acids research.

[15]  D. De Leo,et al.  Effects of individual dental factors on genomic DNA analysis. , 2000, The American journal of forensic medicine and pathology.

[16]  O. Feugeas,et al.  Direct PCR from whole blood, without DNA extraction. , 1990, Nucleic acids research.

[17]  C. Lalueza-Fox,et al.  Tracking down human contamination in ancient human teeth. , 2006, Molecular biology and evolution.

[18]  M. Kayser,et al.  Bringing colour back after 70 years: Predicting eye and hair colour from skeletal remains of World War II victims using the HIrisPlex system. , 2017, Forensic science international. Genetics.

[19]  K. Schoenly A statistical analysis of successional patterns in carrion-arthropod assemblages: implications for forensic entomology and determination of the postmortem interval. , 1992, Journal of forensic sciences.

[20]  John M. Butler,et al.  Forensic DNA Typing: Biology, Technology, and Genetics of STR Markers , 2001 .

[21]  D. Higgins,et al.  Dentine and cementum as sources of nuclear DNA for use in human identification , 2011 .

[22]  J. Builes,et al.  X-STRs as a tool for missing persons identification using only siblings as reference , 2015 .

[23]  Jordan M. Eizenga,et al.  A phylogenetic approach for haplotype analysis of sequence data from complex mitochondrial mixtures. , 2017, Forensic science international. Genetics.

[24]  Gabriel Silva,et al.  Ancestry informative marker sets for determining continental origin and admixture proportions in common populations in America , 2009, Human mutation.

[25]  B. Halliwell,et al.  Hypochlorous acid-induced base modifications in isolated calf thymus DNA. , 1997, Chemical research in toxicology.

[26]  Philip L. F. Johnson,et al.  A Revised Timescale for Human Evolution Based on Ancient Mitochondrial Genomes , 2013, Current Biology.

[27]  C. Frégeau,et al.  New incompatibilities uncovered using the Promega DNA IQ™ chemistry. , 2015, Forensic science international.

[28]  D. Sweet,et al.  Quantification of forensic DNA from various regions of human teeth. , 2003, Journal of forensic sciences.

[29]  A. Wollstein,et al.  Global skin colour prediction from DNA , 2017, Human Genetics.

[30]  E. Willerslev,et al.  More on contamination: the use of asymmetric molecular behavior to identify authentic ancient human DNA. , 2007, Molecular biology and evolution.

[31]  B. Budowle,et al.  A validation study of the Qiagen Investigator DIPplex® kit; an INDEL-based assay for human identification , 2012, International Journal of Legal Medicine.

[32]  D. Foran,et al.  The fingernails of Mary Sullivan: developing reliable methods for selectively isolating endogenous and exogenous DNA from evidence. , 2003, Journal of forensic sciences.

[33]  Micaela Poetsch,et al.  The auditory ossicles as a DNA source for genetic identification of highly putrefied cadavers , 2015, International Journal of Legal Medicine.

[34]  H. Erlich,et al.  Target capture enrichment of nuclear SNP markers for massively parallel sequencing of degraded and mixed samples. , 2018, Forensic science international. Genetics.

[35]  W. Kaufmann,et al.  Diagnoses of neuronal ceroid-lipofuscinosis by immunochemical methods. , 1995, American journal of medical genetics.

[36]  C. Phillips,et al.  Massively parallel sequencing of customised forensically informative SNP panels on the MiSeq , 2016, Electrophoresis.

[37]  Jennifer D. Churchill,et al.  Analysis of Short Tandem Repeat and Single Nucleotide Polymorphism Loci From Single-Source Samples Using a Custom HaloPlex Target Enrichment System Panel , 2016, The American journal of forensic medicine and pathology.

[38]  D. Turbón,et al.  Lack of founding Amerindian mitochondrial DNA lineages in extinct aborigines from Tierra del Fuego-Patagonia. , 1997, Human molecular genetics.

[39]  Weibo Liang,et al.  NGS technology makes microhaplotype a potential forensic marker , 2015 .

[40]  B. Stuart,et al.  The effect of soil type on adipocere formation. , 2005, Forensic science international.

[41]  M. Wadhams,et al.  Extraction, evaluation, and amplification of DNA from decalcified and undecalcified United States Civil War bone. , 1993, Journal of forensic sciences.

[42]  Myung Jin Park,et al.  Simple and highly effective DNA extraction methods from old skeletal remains using silica columns. , 2010, Forensic science international. Genetics.

[43]  O. Drummer,et al.  The contribution of DNA to the disaster victim identification (DVI) effort. , 2011, Forensic science international.

[44]  Usha Chakravarthy,et al.  DNA-based eye colour prediction across Europe with the IrisPlex system. , 2012, Forensic science international. Genetics.

[45]  R. Lessig,et al.  International standards in cases of mass disaster victim identification (DVI) , 2012, Forensic Science, Medicine, and Pathology.

[46]  Suni M. Edson,et al.  Sampling of the cranium for mitochondrial DNA analysis of human skeletal remains , 2009 .

[47]  L. Tsai,et al.  Investigation of length heteroplasmy in mitochondrial DNA control region by massively parallel sequencing. , 2017, Forensic science international. Genetics.

[48]  N. Watson,et al.  Typing of DNA HLA-DQ alpha alleles extracted from human nail material using polymerase chain reaction. , 1995, Journal of forensic sciences.

[49]  T. Irving,et al.  The in situ supermolecular structure of type I collagen. , 2001, Structure.

[50]  Q. Wang,et al.  Expansion of a SNaPshot assay to a 55‐SNP multiplex: Assay enhancements, validation, and power in forensic science , 2016, Electrophoresis.

[51]  M. Holland,et al.  Improved MtDNA sequence analysis of forensic remains using a "mini-primer set" amplification strategy. , 2001, Journal of forensic sciences.

[52]  Toni M. Diegoli Forensic typing of short tandem repeat markers on the X and Y chromosomes. , 2015, Forensic science international. Genetics.

[53]  Charles Ginther,et al.  Identifying individuals by sequencing mitochondrial DNA from teeth , 1992, Nature Genetics.

[54]  Mark Shriver,et al.  A panel of ancestry informative markers for estimating individual biogeographical ancestry and admixture from four continents: utility and applications , 2008, Human mutation.

[55]  F. Betti,et al.  Forensic DNA typing of human nails at various stages of decomposition , 2006 .

[56]  Á. Carracedo,et al.  Effect of environmental factors on PCR-DNA analysis from dental pulp , 2005, International Journal of Legal Medicine.

[57]  Mitchell Holland,et al.  Evaluation of the RapidHIT™ 200, an automated human identification system for STR analysis of single source samples. , 2015, Forensic science international. Genetics.

[58]  Manfred Kayser,et al.  IrisPlex: a sensitive DNA tool for accurate prediction of blue and brown eye colour in the absence of ancestry information. , 2011, Forensic science international. Genetics.

[59]  N. von Wurmb-Schwark,et al.  The impact of DNA contamination of bone samples in forensic case analysis and anthropological research. , 2008, Legal medicine.

[60]  C. Wemmer,et al.  Transporting and storing field-collected specimens for DNA without refrigeration for subsequent DNA extraction and analysis. , 1994, BioTechniques.

[61]  L. Rubio,et al.  Study of Short‐ and Long‐Term Storage of Teeth and Its Influence on DNA , 2009, Journal of forensic sciences.

[62]  B. Sykes,et al.  Authenticating DNA Extracted From Ancient Skeletal Remains , 1995 .

[63]  B Brinkmann,et al.  DNA Commission of the International Society of Forensic Genetics: recommendations on forensic analysis using Y-chromosome STRs. , 2001, Forensic science international.

[64]  D. Hartman,et al.  Examples of kinship analysis where Profiler Plus™ was not discriminatory enough for the identification of victims using DNA identification. , 2011, Forensic science international.

[65]  Ken-ichi Yoshida,et al.  Usefulness of blood vessels as a DNA source for PCR-based genotyping based on two cases of corpse dismemberment. , 2010, Legal medicine.

[66]  Meredith A. Turnbough,et al.  INNULs: A Novel Design Amplification Strategy for Retrotransposable Elements for Studying Population Variation , 2012, Human Heredity.

[67]  E. Haubruge,et al.  Cadaveric volatile organic compounds released by decaying pig carcasses (Sus domesticus L.) in different biotopes. , 2009, Forensic science international.

[68]  P. Wiegand,et al.  As solid as a rock—comparison of CE- and MPS-based analyses of the petrosal bone as a source of DNA for forensic identification of challenging cranial bones , 2017, International Journal of Legal Medicine.

[69]  Eske Willerslev,et al.  DNA in ancient bone - where is it located and how should we extract it? , 2012, Annals of anatomy = Anatomischer Anzeiger : official organ of the Anatomische Gesellschaft.

[70]  David H. Warshauer,et al.  Massively parallel sequencing of 68 insertion/deletion markers identifies novel microhaplotypes for utility in human identity testing. , 2016, Forensic science international. Genetics.

[71]  J. Chaseling,et al.  Tissue preservation in extreme temperatures for rapid response to military deaths. , 2018, Forensic science international. Genetics.

[72]  P. T. Widodo,et al.  DNA identification of human remains in Disaster Victim Identification (DVI): An efficient sampling method for muscle, bone, bone marrow and teeth. , 2018, Forensic science international.

[73]  Kerstin Montelius,et al.  DNA analysis in disaster victim identification , 2012, Forensic Science, Medicine, and Pathology.

[74]  I. Giddings,et al.  A polymerase chain reaction inhibitor of ancient hard and soft tissue DNA extracts is determined as human collagen type I. , 1998, Analytical biochemistry.

[75]  M. Stoneking,et al.  Diversity and heterogeneity in mitochondrial DNA of North American populations. , 2001, Journal of forensic sciences.

[76]  A D Kloosterman,et al.  Objective data on DNA success rates can aid the selection process of crime samples for analysis by rapid mobile DNA technologies. , 2016, Forensic science international.

[77]  Chris Phillips,et al.  Forensic genetic analysis of bio-geographical ancestry. , 2015, Forensic science international. Genetics.

[78]  S. Rhine,et al.  An experimental field protocol for investigating the postmortem interval using multidisciplinary indicators. , 1991, Journal of forensic sciences.

[79]  Sylvain Amory,et al.  Automatable full demineralization DNA extraction procedure from degraded skeletal remains. , 2012, Forensic science international. Genetics.

[80]  B. Kemp,et al.  Use of bleach to eliminate contaminating DNA from the surface of bones and teeth. , 2005, Forensic science international.

[81]  N. von Wurmb-Schwark,et al.  Degradation of biomolecules in artificially and naturally aged teeth: implications for age estimation based on aspartic acid racemization and DNA analysis. , 2008, Forensic science international.

[82]  D. Gangitano,et al.  Preservation and rapid purification of DNA from decomposing human tissue samples. , 2016, Forensic science international. Genetics.

[83]  W. Parson,et al.  Massively parallel sequencing of complete mitochondrial genomes from hair shaft samples. , 2015, Forensic science international. Genetics.

[84]  M. Kayser,et al.  Simultaneous Whole Mitochondrial Genome Sequencing with Short Overlapping Amplicons Suitable for Degraded DNA Using the Ion Torrent Personal Genome Machine , 2015, Human mutation.

[85]  Report on ISFG SNP Panel Discussion , 2008 .

[86]  S. Harbison,et al.  The persistence of DNA under fingernails following submersion in water , 2003 .

[87]  A. Wilson,et al.  Taphonomic Changes to the Buried Body in Arid Environments: An Experimental Case Study in Peru , 2009 .

[88]  Jamie D. Fredericks,et al.  DNA analysis of skeletal tissue recovered from the English Channel. , 2013, Journal of forensic and legal medicine.

[89]  Mitchell M Holland,et al.  Development and assessment of an optimized next-generation DNA sequencing approach for the mtgenome using the Illumina MiSeq. , 2014, Forensic science international. Genetics.

[90]  Amy Z Mundorff,et al.  An economical and efficient method for postmortem DNA sampling in mass fatalities. , 2018, Forensic science international. Genetics.

[91]  A. Torre-Blanco,et al.  Founding Amerindian mitochondrial DNA lineages in ancient Maya from Xcaret, Quintana Roo. , 2001, American journal of physical anthropology.

[92]  Davorka Sutlovic,et al.  Interaction of humic acids with human DNA: Proposed mechanisms and kinetics , 2008, Electrophoresis.

[93]  Sha Tang,et al.  Characterization of mitochondrial DNA heteroplasmy using a parallel sequencing system. , 2010, BioTechniques.

[94]  B. Kemp,et al.  Repeat silica extraction: a simple technique for the removal of PCR inhibitors from DNA extracts , 2006 .

[95]  Duncan A. Taylor,et al.  DNA profiles from fingernails using direct PCR , 2015, Forensic Science, Medicine, and Pathology.

[96]  Niels Morling,et al.  Evaluation of the Precision ID Ancestry Panel for crime case work: A SNP typing assay developed for typing of 165 ancestral informative markers. , 2017, Forensic science international. Genetics.

[97]  H. Ellegren,et al.  Insertion-deletion polymorphisms (indels) as genetic markers in natural populations , 2008, BMC Genetics.

[98]  Ryan E. Mills,et al.  Small insertions and deletions (INDELs) in human genomes. , 2010, Human molecular genetics.

[99]  Niels Morling,et al.  Second-generation sequencing of forensic STRs using the Ion Torrent™ HID STR 10-plex and the Ion PGM™. , 2015, Forensic science international. Genetics.

[100]  Joannah Lee,et al.  Recommendations for DNA laboratories supporting Disaster Victim Identification (DVI) Operations--Australian and New Zealand consensus on ISFG recommendations. , 2008, Forensic science international. Genetics.

[101]  S. Oliveira,et al.  DNA obtained from decomposed corpses cartilage: A comparison with skeleton muscle source , 2008 .

[102]  Pam Scott,et al.  Direct amplification of casework bloodstains using the Promega PowerPlex(®) 21 PCR amplification system. , 2014, Forensic science international. Genetics.

[103]  D. Shin,et al.  Technical note: Efficiency of total demineralization and ion-exchange column for DNA extraction from bone. , 2009, American journal of physical anthropology.

[104]  Kenneth K. Kidd,et al.  SNPs for a universal individual identification panel , 2010, Human Genetics.

[105]  L. Kobilinsky,et al.  Characterization of deoxyribonucleic acid (DNA) obtained from teeth subjected to various environmental conditions. , 1991, Journal of forensic sciences.

[106]  Á. Carracedo,et al.  Forensic performance of two insertion–deletion marker assays , 2012, International Journal of Legal Medicine.

[107]  Titia Sijen,et al.  Developmental validation of the HIrisPlex system: DNA-based eye and hair colour prediction for forensic and anthropological usage. , 2014, Forensic science international. Genetics.

[108]  D. McNevin,et al.  Short tandem repeat (STR) genotyping of keratinised hair. Part 2. An optimised genomic DNA extraction procedure reveals donor dependence of STR profiles. , 2005, Forensic science international.

[109]  Duncan A. Taylor,et al.  Successful direct amplification of nuclear markers from a single hair follicle , 2013, Forensic Science, Medicine, and Pathology.

[110]  B. Rerkamnuaychoke,et al.  Forensic genetic analysis of bone remain samples. , 2018, Forensic science international.

[111]  Tom J. Griffin,et al.  A Multidisciplinary Approach to the Detection of Clandestine Graves , 1992 .

[112]  R. Lessig,et al.  Quality exercise in disaster victim identification , 2015 .

[113]  Ate D Kloosterman,et al.  Efficacy and limits of genotyping low copy number (LCN) DNA samples by multiplex PCR of STR loci. , 2003, Journal de la Societe de biologie.

[114]  B. Kemp,et al.  Further evaluation of the efficacy of contamination removal from bone surfaces. , 2013, Forensic science international.

[115]  J. Jakubowska,et al.  Comparison of three methods of DNA extraction from human bones with different degrees of degradation , 2011, International Journal of Legal Medicine.

[116]  Duncan A. Taylor,et al.  Direct PCR Improves the Recovery of DNA from Various Substrates , 2015, Journal of forensic sciences.

[117]  B. Stuart,et al.  The effect of the burial environment on adipocere formation. , 2005, Forensic science international.

[118]  J. Bytheway,et al.  The Ethics and Best Practices of Human Decomposition Facilities in the United States , 2015 .

[119]  Francisco M De La Vega,et al.  Analyses of a set of 128 ancestry informative single-nucleotide polymorphisms in a global set of 119 population samples , 2011, Investigative Genetics.

[120]  R. Schwenzer,et al.  Implementation of a robotized real-time PCR setup for the use of the Quantifiler™ Human DNA Quantification Kit , 2008 .

[121]  E. Parra,et al.  A simple and efficient method for extracting DNA from old and burned bone. , 2004, Journal of forensic sciences.

[122]  Dennis McNevin,et al.  Assessment of the Precision ID Ancestry panel , 2018, International Journal of Legal Medicine.

[123]  J. Austin,et al.  Reduced reaction volumes and increased Taq DNA polymerase concentration improve STR profiling outcomes from a real-world low template DNA source: telogen hairs , 2015, Forensic Science, Medicine, and Pathology.

[124]  K. Geršak,et al.  Highly efficient automated extraction of DNA from old and contemporary skeletal remains. , 2016, Journal of forensic and legal medicine.

[125]  B. Halliwell,et al.  Loss of oxidized and chlorinated bases in DNA treated with reactive oxygen species: implications for assessment of oxidative damage in vivo. , 2002, Biochemical and biophysical research communications.

[126]  D. Higgins,et al.  Teeth as a source of DNA for forensic identification of human remains: a review. , 2013, Science & justice : journal of the Forensic Science Society.

[127]  Suni M. Edson,et al.  Naming the Dead - Confronting the Realities of Rapid Identification of Degraded Skeletal Remains. , 2004, Forensic science review.

[128]  Carlos M Vullo,et al.  GHEP-ISFG collaborative simulated exercise for DVI/MPI: Lessons learned about large-scale profile database comparisons. , 2016, Forensic science international. Genetics.

[129]  Titia Sijen,et al.  The HIrisPlex-S system for eye, hair and skin colour prediction from DNA: Introduction and forensic developmental validation. , 2018, Forensic science international. Genetics.

[130]  V. Pascali,et al.  Collaborative EDNAP exercise on the IrisPlex system for DNA-based prediction of human eye colour. , 2014, Forensic science international. Genetics.

[131]  R. Chakraborty,et al.  Haplotype block: a new type of forensic DNA markers , 2009, International Journal of Legal Medicine.

[132]  Duncan A. Taylor,et al.  Genetic profiling from challenging samples: Direct PCR of touch DNA , 2013 .

[133]  D. Primorac,et al.  Twelve-year experience in identification of skeletal remains from mass graves. , 2005, Croatian medical journal.

[134]  M. Holland,et al.  Considering DNA damage when interpreting mtDNA heteroplasmy in deep sequencing data. , 2017, Forensic science international. Genetics.

[135]  T. Spector,et al.  First all-in-one diagnostic tool for DNA intelligence: genome-wide inference of biogeographic ancestry, appearance, relatedness, and sex with the Identitas v1 Forensic Chip , 2012, International Journal of Legal Medicine.

[136]  A. Mundorff,et al.  Examination of DNA yield rates for different skeletal elements at increasing post mortem intervals. , 2014, Forensic science international. Genetics.

[137]  Á. Carracedo,et al.  Inferring ancestral origin using a single multiplex assay of ancestry-informative marker SNPs. , 2007, Forensic science international. Genetics.

[138]  K. Kidd,et al.  Mini-haplotypes as lineage informative SNPs and ancestry inference SNPs , 2012, European Journal of Human Genetics.

[139]  D. McNevin,et al.  Direct-to-PCR tissue preservation for DNA profiling , 2015, International Journal of Legal Medicine.

[140]  C. Frégeau,et al.  Competition for DNA binding sites using Promega DNA IQ™ paramagnetic beads. , 2012, Forensic science international. Genetics.

[141]  S. Oppenheimer,et al.  Molecular Phylogeography of a Human Autosomal Skin Color Locus Under Natural Selection , 2013, G3: Genes, Genomes, Genetics.

[142]  M. Holland,et al.  Second generation sequencing allows for mtDNA mixture deconvolution and high resolution detection of heteroplasmy , 2011, Croatian medical journal.

[143]  W Parson,et al.  Analysis of artificially degraded DNA using STRs and SNPs--results of a collaborative European (EDNAP) exercise. , 2006, Forensic science international.

[144]  António Amorim,et al.  A new multiplex for human identification using insertion/deletion polymorphisms , 2009, Electrophoresis.

[145]  Bruce Budowle,et al.  High sensitivity multiplex short tandem repeat loci analyses with massively parallel sequencing. , 2015, Forensic science international. Genetics.

[146]  Z. Nagy A hands-on overview of tissue preservation methods for molecular genetic analyses , 2010, Organisms Diversity & Evolution.

[147]  S. Weiner,et al.  Relatively well preserved DNA is present in the crystal aggregates of fossil bones. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[148]  Manfred Kayser,et al.  The HIrisPlex system for simultaneous prediction of hair and eye colour from DNA. , 2013, Forensic science international. Genetics.

[149]  B. Llamas,et al.  DNA capture and next-generation sequencing can recover whole mitochondrial genomes from highly degraded samples for human identification , 2013, Investigative Genetics.

[150]  B H Olson,et al.  Rapid method for separation of bacterial DNA from humic substances in sediments for polymerase chain reaction , 1992, Applied and environmental microbiology.

[151]  P. Bedford,et al.  Post mortem sampling of the bladder for the identification of victims of fire related deaths. , 2013, Forensic science international.

[152]  W. Hauswirth,et al.  Mitochondrial DNA copy number in bovine oocytes and somatic cells. , 1982, Developmental biology.

[153]  J. Austin,et al.  A quantitative assessment of a reliable screening technique for the STR analysis of telogen hair roots. , 2013, Forensic science international. Genetics.

[154]  K. Sturk-Andreaggi,et al.  Performance evaluation of a mitogenome capture and Illumina sequencing protocol using non-probative, case-type skeletal samples: Implications for the use of a positive control in a next-generation sequencing procedure. , 2017, Forensic science international. Genetics.

[155]  Harald J Meyer,et al.  The Kaprun cable car fire disaster--aspects of forensic organisation following a mass fatality with 155 victims. , 2003, Forensic science international.

[156]  F. Le,et al.  Interim and archival preservation of plant specimens in alcohols for DNA studies. , 1996 .

[157]  N. Rohland,et al.  Comparison and optimization of ancient DNA extraction. , 2007, BioTechniques.

[158]  W. Vahjen,et al.  Interference of humic acids and DNA extracted directly from soil in detection and transformation of recombinant DNA from bacteria and a yeast , 1993, Applied and environmental microbiology.

[159]  Suni M. Edson,et al.  Field Contamination of Skeletonized Human Remains with Exogenous DNA , 2013, Journal of forensic sciences.

[160]  D. Tobin,et al.  Modelling the buried human body environment in upland climes using three contrasting field sites. , 2007, Forensic science international.

[161]  W. Goodwin The use of forensic DNA analysis in humanitarian forensic action: The development of a set of international standards. , 2017, Forensic science international.

[162]  Ana Rita Oliveira,et al.  Assessment of IrisPlex-based multiplex for eye and skin color prediction with application to a Portuguese population , 2015, International Journal of Legal Medicine.

[163]  E. Bartelink,et al.  DNA Preservation in Skeletal Elements from the World Trade Center Disaster: Recommendations for Mass Fatality Management *,† , 2009, Journal of forensic sciences.

[164]  Shosuke Ito,et al.  Predicting Phenotype from Genotype: Normal Pigmentation * , 2010, Journal of forensic sciences.

[165]  L. Pikó,et al.  Number of mitochondria and some properties of mitochondrial DNA in the mouse egg. , 1976, Developmental biology.

[166]  R. Just,et al.  A high-throughput Sanger strategy for human mitochondrial genome sequencing , 2013, BMC Genomics.

[167]  T. Parsons,et al.  Success rates of nuclear short tandem repeat typing from different skeletal elements. , 2007, Croatian medical journal.

[168]  MPS analysis of the mtDNA hypervariable regions on the MiSeq with improved enrichment , 2017, International Journal of Legal Medicine.

[169]  E. Willerslev,et al.  Insights into the processes behind the contamination of degraded human teeth and bone samples with exogenous sources of DNA , 2006 .

[170]  R. Pettifor,et al.  Patterns of nuclear DNA degeneration over time — a case study in historic teeth samples , 2003, Molecular ecology.

[171]  H. Hayatsu,et al.  Reaction of sodium hypochlorite with nucleic acids and their constituents. , 1971, Chemical & pharmaceutical bulletin.

[172]  C. W. Kilpatrick,et al.  Noncryogenic Preservation of Mammalian Tissues for DNA Extraction: An Assessment of Storage Methods , 2002, Biochemical Genetics.

[173]  J. Denton,et al.  Effects of hydrated lime and quicklime on the decay of buried human remains using pig cadavers as human body analogues. , 2012, Forensic science international.

[174]  M. Holland,et al.  Mitochondrial DNA Sequence Analysis - Validation and Use for Forensic Casework. , 1999, Forensic science review.

[175]  R. Just,et al.  Evaluation of automatable silica-based extraction methods for low quantity samples , 2011 .

[176]  Nirav C. Merchant,et al.  Neolithic mitochondrial haplogroup H genomes and the genetic origins of Europeans , 2013, Nature Communications.

[177]  J. Yunis,et al.  Different dental tissues as source of DNA for human identification in forensic cases. , 2003, Croatian medical journal.

[178]  K. Kidd,et al.  Progress toward an efficient panel of SNPs for ancestry inference. , 2014, Forensic science international. Genetics.

[179]  John D. Currey,et al.  Bones: Structure and Mechanics , 2002 .

[180]  Walther Parson,et al.  Forensic Population Genetics - Original Research Full mtGenome reference data: Development and characterization of 588 forensic-quality haplotypes representing three U.S. populations , 2015 .

[181]  E. Willerslev,et al.  Biochemical and physical correlates of DNA contamination in archaeological human bones and teeth excavated at Matera, Italy , 2005 .

[182]  J. Dissing,et al.  On the elimination of extraneous DNA in fossil human teeth with hypochlorite , 2008 .

[183]  A. von Haeseler,et al.  Mitochondrial DNA sequencing of shed hairs and saliva on robbery caps: sensitivity and matching probabilities. , 1998, Journal of forensic sciences.

[184]  W R Mayr,et al.  DNA Commission of the International Society for Forensic Genetics (ISFG): recommendations regarding the role of forensic genetics for disaster victim identification (DVI). , 2007, Forensic science international. Genetics.

[185]  Z. Xuan,et al.  Genome-wide in situ exon capture for selective resequencing , 2007, Nature Genetics.

[186]  J. Maguire,et al.  Solution Hybrid Selection with Ultra-long Oligonucleotides for Massively Parallel Targeted Sequencing , 2009, Nature Biotechnology.

[187]  H. Swerdlow,et al.  A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers , 2012, BMC Genomics.

[188]  Hans-Jürgen Bandelt,et al.  Extended guidelines for mtDNA typing of population data in forensic science. , 2007, Forensic science international. Genetics.

[189]  M V Lareu,et al.  Case report: identification of skeletal remains using short-amplicon marker analysis of severely degraded DNA extracted from a decomposed and charred femur. , 2008, Forensic science international. Genetics.

[190]  Kenneth K Kidd,et al.  Expanding data and resources for forensic use of SNPs in individual identification. , 2012, Forensic science international. Genetics.

[191]  D. Corach,et al.  Long-term room temperature preservation of corpse soft tissue: an approach for tissue sample storage , 2011, Investigative Genetics.

[192]  Optimization of Human mtDNA Control Region Sequencing for Forensic Applications , 2014, Journal of forensic sciences.

[193]  N. Rohland,et al.  A rapid column‐based ancient DNA extraction method for increased sample throughput , 2009, Molecular ecology resources.

[194]  T. Parsons,et al.  High efficiency DNA extraction from bone by total demineralization. , 2007, Forensic science international. Genetics.

[195]  Ryan E. Mills,et al.  Natural genetic variation caused by small insertions and deletions in the human genome. , 2011, Genome research.

[196]  W C Rodriguez,et al.  Decomposition of buried bodies and methods that may aid in their location. , 1985, Journal of forensic sciences.

[197]  Reza R R Gerretsen,et al.  Femur, rib, and tooth sample collection for DNA analysis in disaster victim identification (DVI) , 2008, Forensic science, medicine, and pathology.

[198]  Robert E. M. Hedges,et al.  Bone diagenesis: an overview of processes , 2002 .

[199]  M. Collins,et al.  BONE PRESERVATION AND DNA AMPLIFICATION , 2002 .

[200]  D. McNevin,et al.  Short tandem repeat (STR) genotyping of keratinised hair. Part 1. Review of current status and knowledge gaps. , 2005, Forensic science international.

[201]  M. Ingman,et al.  Evaluation of mitochondrial DNA coding region assays for increased discrimination in forensic analysis. , 2008, Forensic science international. Genetics.

[202]  Automated Genotyping of a Highly Informative Panel of 40 Short Insertion-Deletion Polymorphisms Resolved in Polyacrylamide Gels for Forensic Identification and Kinship Analysis , 2012, Transfusion Medicine and Hemotherapy.

[203]  H. Malmström,et al.  Extensive human DNA contamination in extracts from ancient dog bones and teeth. , 2005, Molecular biology and evolution.

[204]  Connie L. Parks A Study of the Human Decomposition Sequence in Central Texas * , 2011, Journal of forensic sciences.

[205]  D. McNevin,et al.  Human tissue preservation for disaster victim identification (DVI) in tropical climates. , 2012, Forensic science international. Genetics.

[206]  B. Stuart,et al.  The effect of the method of burial on adipocere formation. , 2005, Forensic science international.

[207]  K. Kidd,et al.  Current sequencing technology makes microhaplotypes a powerful new type of genetic marker for forensics. , 2014, Forensic science international. Genetics.

[208]  N. Morling,et al.  Application of thiopropyl sepharose 6B for removal of PCR inhibitors from DNA extracts of a thigh bone recovered from the sea , 2003, International Journal of Legal Medicine.

[209]  M. Mahesh,et al.  DNA profiling and forensic dentistry--a review of the recent concepts and trends. , 2011, Journal of forensic and legal medicine.

[210]  V Castella,et al.  Genetic identification of decomposed cadavers using nails as DNA source. , 2008, Forensic science international. Genetics.

[211]  António Amorim,et al.  Straightforward Inference of Ancestry and Admixture Proportions through Ancestry-Informative Insertion Deletion Multiplexing , 2012, PloS one.

[212]  Bruce Budowle,et al.  High-quality and high-throughput massively parallel sequencing of the human mitochondrial genome using the Illumina MiSeq. , 2014, Forensic science international. Genetics.

[213]  M. Holland,et al.  Mitochondrial DNA sequence analysis of human skeletal remains: identification of remains from the Vietnam War. , 1993, Journal of forensic sciences.

[214]  K K Kidd,et al.  The utility of DNA typing in forensic work. , 1991, Science.

[215]  C. Kreader Relief of amplification inhibition in PCR with bovine serum albumin or T4 gene 32 protein , 1996, Applied and environmental microbiology.

[216]  Titia Sijen,et al.  Developmental validation of the IrisPlex system: determination of blue and brown iris colour for forensic intelligence. , 2011, Forensic science international. Genetics.

[217]  S. Hughes-Stamm,et al.  In-field collection and preservation of decomposing human tissues to facilitate rapid purification and STR typing. , 2018, Forensic science international. Genetics.

[218]  P. Boag,et al.  Preservation of avian blood and tissue samples for DNA analyses , 1991 .

[219]  T. Sijen,et al.  DNA and RNA profiling of excavated human remains with varying postmortem intervals , 2016, International Journal of Legal Medicine.

[220]  K. Kidd,et al.  Evaluating 130 microhaplotypes across a global set of 83 populations. , 2017, Forensic science international. Genetics.

[221]  A. Alonso,et al.  Challenges of DNA profiling in mass disaster investigations. , 2005, Croatian medical journal.

[222]  Mariusz Goniewicz,et al.  Current genetic methodologies in the identification of disaster victims and in forensic analysis , 2011, Journal of Applied Genetics.

[223]  Bruce Budowle,et al.  Genetic analysis of the Yavapai Native Americans from West-Central Arizona using the Illumina MiSeq FGx™ forensic genomics system. , 2016, Forensic science international. Genetics.

[224]  P. Endicott,et al.  Preferential access to genetic information from endogenous hominin ancient DNA and accurate quantitative SNP-typing via SPEX , 2009, Nucleic acids research.

[225]  Dennis McNevin,et al.  Forensically relevant SNaPshot® assays for human DNA SNP analysis: a review , 2016, International Journal of Legal Medicine.

[226]  Á. Carracedo,et al.  A SNaPshot of next generation sequencing for forensic SNP analysis. , 2015, Forensic science international. Genetics.

[227]  B. Ludes,et al.  Case report: on the use of the HID-Ion AmpliSeq™ Ancestry Panel in a real forensic case , 2017, International Journal of Legal Medicine.

[228]  Bruce Budowle,et al.  Blind study evaluation illustrates utility of the Ion PGM™ system for use in human identity DNA typing , 2015, Croatian medical journal.

[229]  R. Stoughton,et al.  INFLUENCE OF DIMETHYLSULFOXIDE (DMSO) ON HUMAN PERCUTANEOUS ABSORPTION. , 1964, Archives of dermatology.

[230]  M. Grassberger,et al.  Initial Study of Arthropod Succession on Pig Carrion in a Central European Urban Habitat , 2004, Journal of medical entomology.

[231]  C. Thermes,et al.  Ten years of next-generation sequencing technology. , 2014, Trends in genetics : TIG.

[232]  S. Hummel,et al.  DNA preservation: A microsatellite‐DNA study on ancient skeletal remains , 1999, Electrophoresis.

[233]  K. Kidd,et al.  Genetic markers for massively parallel sequencing in forensics , 2015 .

[234]  Mark Stoneking,et al.  High-throughput sequencing of complete human mtDNA genomes from the Philippines. , 2011, Genome research.

[235]  E. Graham DNA reviews: hair , 2007, Forensic science, medicine, and pathology.

[236]  E. Hagelberg,et al.  Isolation and characterization of DNA from archaeological bone , 1991, Proceedings of the Royal Society of London. Series B: Biological Sciences.

[237]  B. Budowle,et al.  Whole mitochondrial genome genetic diversity in an Estonian population sample , 2015, International Journal of Legal Medicine.

[238]  Bruce Budowle,et al.  Forensically relevant SNP classes. , 2008, BioTechniques.

[239]  Suni M. Edson,et al.  Extraction of DNA from Skeletal Remains. , 2016, Methods in molecular biology.

[240]  C. Frégeau,et al.  Validation of a DNA IQ-based extraction method for TECAN robotic liquid handling workstations for processing casework. , 2010, Forensic science international. Genetics.

[241]  Reza Alaeddini Forensic implications of PCR inhibition--A review. , 2012, Forensic science international. Genetics.

[242]  Dennis McNevin,et al.  Non-cryogenic forensic tissue preservation in the field: a review , 2013 .

[243]  Gillian Tully,et al.  The EDNAP mitochondrial DNA population database (EMPOP) collaborative exercises: organisation, results and perspectives. , 2004, Forensic science international.

[244]  Ryan E. Mills,et al.  An initial map of insertion and deletion (INDEL) variation in the human genome. , 2006, Genome research.

[245]  R. G. Garrido,et al.  Cartilage and phalanges from hallux: Alternative sources of samples for DNA typing in disaster victim identification (DVI). A comparative study , 2013 .

[246]  S. Pääbo,et al.  The retrieval of ancient human DNA sequences. , 1996, American journal of human genetics.

[247]  M Kuś,et al.  Comparison of three different DNA extraction methods from a highly degraded biological material. , 2016, Journal of forensic and legal medicine.

[248]  David H. Warshauer,et al.  Sequencing the hypervariable regions of human mitochondrial DNA using massively parallel sequencing: Enhanced data acquisition for DNA samples encountered in forensic testing. , 2015, Legal medicine.

[249]  K. Watt,et al.  Decontamination techniques in ancient DNA analysis , 2005 .

[250]  D. Corach,et al.  A DNA extraction method of small quantities of bone for high-quality genotyping. , 2013, Forensic science international. Genetics.

[251]  Matthias Meyer,et al.  Generating barcoded libraries for multiplex high-throughput sequencing. , 2012, Methods in molecular biology.

[252]  Martin Grassberger,et al.  Evaluation of a novel tagging and tissue preservation system for potential use in forensic sample collection. , 2005, Forensic science international.

[253]  R. Montiel,et al.  Authenticating Ancient Human Mitochondrial DNA , 2001, Human biology.

[254]  M V Lareu,et al.  Revision of the SNPforID 34-plex forensic ancestry test: Assay enhancements, standard reference sample genotypes and extended population studies. , 2013, Forensic science international. Genetics.

[255]  R. Chakraborty,et al.  Characterization of 114 insertion/deletion (INDEL) polymorphisms, and selection for a global INDEL panel for human identification. , 2014, Legal medicine.

[256]  R. Mattern,et al.  The Achilles tendon as a DNA source for STR typing of highly decayed corpses. , 2007, Forensic science international.

[257]  F. Moriya,et al.  Effects of environmental conditions to which nails are exposed on DNA analysis of them. , 2003, Legal medicine.

[258]  T. Parsons,et al.  DNA extraction from aged skeletal samples for STR typing by capillary electrophoresis. , 2012, Methods in molecular biology.

[259]  W. Parson,et al.  Optimized mtDNA Control Region Primer Extension Capture Analysis for Forensically Relevant Samples and Highly Compromised mtDNA of Different Age and Origin , 2017, Genes.

[260]  C. Snow,et al.  Forensic DNA testing on skeletal remains from mass graves: a pilot project in Guatemala. , 1995, Journal of forensic sciences.

[261]  Jennifer D. Churchill,et al.  Working towards implementation of whole genome mitochondrial DNA sequencing into routine casework , 2017 .

[262]  D. Hartman,et al.  Toenails as an alternative source material for the extraction of DNA from decomposed human remains. , 2016, Forensic science international.

[263]  S. Ohnishi,et al.  DNA damage induced by hypochlorite and hypobromite with reference to inflammation-associated carcinogenesis. , 2002, Cancer letters.

[264]  E. Meyer,et al.  Extraction and amplification of authentic DNA from ancient human remains. , 2000, Forensic science international.

[265]  Peter M Schneider,et al.  DNA-based prediction of human externally visible characteristics in forensics: motivations, scientific challenges, and ethical considerations. , 2009, Forensic science international. Genetics.

[266]  P. Gill,et al.  Identification of the remains of the Romanov family by DNA analysis , 1994, Nature Genetics.

[267]  T. Lindahl,et al.  Rate of depurination of native deoxyribonucleic acid. , 1972, Biochemistry.

[268]  A. Chamberlain,et al.  Extraction of single-copy nuclear DNA from forensic specimens with a variety of postmortem histories. , 1997, Journal of forensic sciences.

[269]  Li Li,et al.  Preliminary DNA Identification for the Tsunami Victims in Thailand , 2016, Genomics, proteomics & bioinformatics.

[270]  G. Calacal,et al.  Comparing different post-mortem human samples as DNA sources for downstream genotyping and identification. , 2015, Forensic science international. Genetics.

[271]  M. Krawczak,et al.  Use of X-linked markers for forensic purposes , 2003, International Journal of Legal Medicine.