Genome characterization of Turkey Rotavirus G strains from the United States identifies potential recombination events with human Rotavirus B strains

Rotavirus G (RVG) strains have been detected in a variety of avian species, but RVG genomes have been published from only a single pigeon and two chicken strains. Two turkey RVG strains were identified and characterized, one in a hatchery with no reported health issues and the other in a hatchery with high embryo/poult mortality. The two turkey RVG strains shared only an 85.3 % nucleotide sequence identity in the VP7 gene while the other genes possessed high nucleotide identity among them (96.3–99.9 %). Low nucleotide percentage identities (31.6–87.3 %) occurred among the pigeon and chicken RVG strains. Interestingly, potential recombination events were detected between our RVG strains and a human RVB strain, in the VP6 and NSP3 segments. The epidemiology of RVG in avian flocks and the pathogenicity of the two different RVG strains should be further investigated to understand the ecology and impact of RVG in commercial poultry flocks.

[1]  T. Knutson,et al.  A porcine enterovirus G associated with enteric disease contains a novel papain-like cysteine protease , 2017, The Journal of general virology.

[2]  K. Bányai,et al.  Candidate new rotavirus species in Schreiber's bats, Serbia , 2016, Infection, Genetics and Evolution.

[3]  M. B. Boniotti,et al.  Molecular characterization of avian rotaviruses circulating in Italian poultry flocks , 2015, Avian pathology : journal of the W.V.P.A.

[4]  R. Woods Intrasegmental recombination does not contribute to the long-term evolution of group A rotavirus. , 2015, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.

[5]  K. Bányai,et al.  Candidate New Rotavirus Species in Sheltered Dogs, Hungary , 2015, Emerging infectious diseases.

[6]  Timothy B. Stockwell,et al.  Complete Genomic Sequence for an Avian Group G Rotavirus from South Africa , 2015, Genome Announcements.

[7]  B. Murrell,et al.  RDP4: Detection and analysis of recombination patterns in virus genomes , 2015, Virus evolution.

[8]  M. Estes,et al.  A Novel Form of Rotavirus NSP2 and Phosphorylation-Dependent NSP2-NSP5 Interactions Are Associated with Viroplasm Assembly , 2013, Journal of Virology.

[9]  J. Matthijnssens,et al.  Genotype constellation and evolution of group A rotaviruses infecting humans. , 2012, Current opinion in virology.

[10]  J. Matthijnssens,et al.  VP6-sequence-based cutoff values as a criterion for rotavirus species demarcation , 2012, Archives of Virology.

[11]  Steven L Salzberg,et al.  Fast gapped-read alignment with Bowtie 2 , 2012, Nature Methods.

[12]  H. Hotzel,et al.  Detection of avian rotaviruses of groups A, D, F and G in diseased chickens and turkeys from Europe and Bangladesh , 2011, Veterinary Microbiology.

[13]  D. Belnap,et al.  Sequence analysis of the VP6-encoding genome segment of avian group F and G rotaviruses. , 2011, Virology.

[14]  J. Matthijnssens,et al.  Zoonotic aspects of rotaviruses. , 2010, Veterinary microbiology.

[15]  M. Hardy,et al.  Rotavirus NSP1 Inhibits NFκB Activation by Inducing Proteasome-Dependent Degradation of β-TrCP: A Novel Mechanism of IFN Antagonism , 2009, PLoS pathogens.

[16]  D. Patnayak,et al.  A Retrospective Study on Poult Enteritis Syndrome in Minnesota , 2009 .

[17]  S. Harrison,et al.  Mechanism for coordinated RNA packaging and genome replication by rotavirus polymerase VP1. , 2008, Structure.

[18]  Jelle Matthijnssens,et al.  Recommendations for the classification of group A rotaviruses using all 11 genomic RNA segments , 2008, Archives of Virology.

[19]  Jelle Matthijnssens,et al.  Full Genome-Based Classification of Rotaviruses Reveals a Common Origin between Human Wa-Like and Porcine Rotavirus Strains and Human DS-1-Like and Bovine Rotavirus Strains , 2008, Journal of Virology.

[20]  B. Prasad,et al.  Crystallographic and Biochemical Analysis of Rotavirus NSP2 with Nucleotides Reveals a Nucleoside Diphosphate Kinase-Like Activity , 2007, Journal of Virology.

[21]  M. Barro,et al.  Rotavirus NSP1 Inhibits Expression of Type I Interferon by Antagonizing the Function of Interferon Regulatory Factors IRF3, IRF5, and IRF7 , 2007, Journal of Virology.

[22]  M. Elschner,et al.  Detection of Rotaviruses and Intestinal Lesions in Broiler Chicks from Flocks with Runting and Stunting Syndrome (RSS) , 2006, Avian diseases.

[23]  J. Ball,et al.  Rotavirus NSP4: a multifunctional viral enterotoxin. , 2005, Viral immunology.

[24]  G. Allan,et al.  Epidemiology of rotavirus infection in broiler chickens: Recognition of four serogroups , 2005, Archives of Virology.

[25]  H. Ito,et al.  Complete nucleotide sequence of a group A avian rotavirus genome and a comparison with its counterparts of mammalian rotaviruses. , 2001, Virus research.

[26]  P. Vende,et al.  Efficient Translation of Rotavirus mRNA Requires Simultaneous Interaction of NSP3 with the Eukaryotic Translation Initiation Factor eIF4G and the mRNA 3′ End , 2000, Journal of Virology.

[27]  D. Chen,et al.  Rotavirus open cores catalyze 5'-capping and methylation of exogenous RNA: evidence that VP3 is a methyltransferase. , 1999, Virology.

[28]  E. Fabbretti,et al.  Two non-structural rotavirus proteins, NSP2 and NSP5, form viroplasm-like structures in vivo. , 1999, The Journal of general virology.

[29]  Jean Cohen,et al.  Rotavirus RNA‐binding protein NSP3 interacts with eIF4GI and evicts the poly(A) binding protein from eIF4F , 1998, The EMBO journal.

[30]  S. Buratowski,et al.  Active site of the mRNA-capping enzyme guanylyltransferase from Saccharomyces cerevisiae: similarity to the nucleotidyl attachment motif of DNA and RNA ligases. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[31]  A. Sandino,et al.  Characterization of rotavirus guanylyltransferase activity associated with polypeptide VP3. , 1991, The Journal of general virology.

[32]  G. Both,et al.  Conservation of a potential metal binding motif despite extensive sequence diversity in the rotavirus nonstructural protein NS53. , 1990, Virology.

[33]  M. Estes,et al.  Rotavirus gene structure and function. , 1989, Microbiological reviews.

[34]  K. Nagaraja,et al.  Primary isolation and identification of avian rotaviruses from turkeys exhibiting signs of clinical enteritis in a continuous MA 104 cell line. , 1986, Avian diseases.

[35]  Y. Saif,et al.  Comparison of immune electron microscopy and genome electropherotyping techniques for detection of turkey rotaviruses and rotaviruslike viruses in intestinal contents , 1986, Journal of clinical microbiology.

[36]  M. McCrae,et al.  Definition of two new groups of atypical rotaviruses. , 1986, The Journal of general virology.

[37]  L. Saif,et al.  Enteric viruses in diarrheic turkey poults. , 1985, Avian diseases.