A two-locus DNA sequence database for typing plant and human pathogens within the Fusarium oxysporum species complex.

[1]  T. Arie,et al.  Variation and phylogeny of Fusarium oxysporum isolates based on nucleotide sequences of polygalacturonase genes. , 2009, Microbes and environments.

[2]  E. Steenkamp,et al.  Evolutionary Relationships among the Fusarium oxysporum f. sp. cubense Vegetative Compatibility Groups , 2009, Applied and Environmental Microbiology.

[3]  M. Rep,et al.  Pathogen profile update: Fusarium oxysporum. , 2009, Molecular plant pathology.

[4]  D. Geiser,et al.  Taxonomy and phylogeny of the Fusarium dimerum species group , 2009, Mycologia.

[5]  T. Giraud,et al.  Assessing the performance of single-copy genes for recovering robust phylogenies. , 2008, Systematic biology.

[6]  M. Rep,et al.  Recent developments in the molecular discrimination of formae speciales of Fusarium oxysporum. , 2008, Pest management science.

[7]  Kerry O'Donnell,et al.  Molecular Phylogenetic Diversity, Multilocus Haplotype Nomenclature, and In Vitro Antifungal Resistance within the Fusarium solani Species Complex , 2008, Journal of Clinical Microbiology.

[8]  M. Rep,et al.  The presence of a virulence locus discriminates Fusarium oxysporum isolates causing tomato wilt from other isolates. , 2008, Environmental microbiology.

[9]  O. K. Ribeiro,et al.  Phytophthora Database: A Forensic Database Supporting the Identification and Monitoring of Phytophthora. , 2008, Plant Disease.

[10]  M. Jacobsen,et al.  Multilocus Sequence Typing of Pathogenic Candida Species , 2008, Eukaryotic Cell.

[11]  Alexander D. Johnson,et al.  The Parasexual Cycle in Candida albicans Provides an Alternative Pathway to Meiosis for the Formation of Recombinant Strains , 2008, PLoS biology.

[12]  D. Geiser,et al.  An adaptive evolutionary shift in Fusarium head blight pathogen populations is driving the rapid spread of more toxigenic Fusarium graminearum in North America. , 2008, Fungal genetics and biology : FG & B.

[13]  Elizabeth Pennisi,et al.  Proposal to 'Wikify' GenBank Meets Stiff Resistance , 2008, Science.

[14]  Tom Hsiang,et al.  Intergeneric transfer of ribosomal genes between two fungi , 2008, BMC Evolutionary Biology.

[15]  T. Arie,et al.  Biological and phylogenetic characterization of Fusarium oxysporum complex, which causes yellows on Brassica spp., and proposal of F. oxysporum f. sp. rapae, a novel forma specialis pathogenic on B. rapa in Japan. , 2008, Phytopathology.

[16]  C. Jackson,et al.  High-Frequency Intragenomic Heterogeneity of the Ribosomal DNA Intergenic Spacer Region in Trichophyton violaceum , 2008, Eukaryotic Cell.

[17]  M. Ghannoum,et al.  Fusarium and Candida albicans Biofilms on Soft Contact Lenses: Model Development, Influence of Lens Type, and Susceptibility to Lens Care Solutions , 2007, Antimicrobial Agents and Chemotherapy.

[18]  Rodrigo Lopez,et al.  Clustal W and Clustal X version 2.0 , 2007, Bioinform..

[19]  N. Patron,et al.  Origin and distribution of epipolythiodioxopiperazine (ETP) gene clusters in filamentous ascomycetes , 2007, BMC Evolutionary Biology.

[20]  Bart Lievens,et al.  A robust identification and detection assay to discriminate the cucumber pathogens Fusarium oxysporum f. sp. cucumerinum and f. sp. radicis-cucumerinum. , 2007, Environmental microbiology.

[21]  D. Geiser,et al.  Phylogenetic Diversity and Microsphere Array-Based Genotyping of Human Pathogenic Fusaria, Including Isolates from the Multistate Contact Lens-Associated U.S. Keratitis Outbreaks of 2005 and 2006 , 2007, Journal of Clinical Microbiology.

[22]  Jeffrey P Townsend,et al.  Profiling phylogenetic informativeness. , 2007, Systematic biology.

[23]  R. Hoekstra,et al.  Mitotic Recombination Accelerates Adaptation in the Fungus Aspergillus nidulans , 2007, PLoS genetics.

[24]  T. Eickbush,et al.  Finely Orchestrated Movements: Evolution of the Ribosomal RNA Genes , 2007, Genetics.

[25]  M. Gahegan,et al.  Plant pathogen culture collections: it takes a village to preserve these resources vital to the advancement of agricultural security and plant pathology. , 2006, Phytopathology.

[26]  Á. Mesterházy,et al.  Detection of new fumonisin mycotoxins and fumonisin-like compounds by reversed-phase high-performance liquid chromatography/electrospray ionization ion trap mass spectrometry. , 2006, Rapid communications in mass spectrometry : RCM.

[27]  K. Wannemuehler,et al.  Multistate outbreak of Fusarium keratitis associated with use of a contact lens solution. , 2006, JAMA.

[28]  R. Vilgalys,et al.  Phylogenetic utility of indels within ribosomal DNA and beta-tubulin sequences from fungi in the Rhizoctonia solani species complex. , 2006, Molecular phylogenetics and evolution.

[29]  Hua Ling,et al.  Emergence of a new disease as a result of interspecific virulence gene transfer , 2006, Nature Genetics.

[30]  A. Glenn,et al.  Fumonisin production and bioavailability to maize seedlings grown from seeds inoculated with Fusarium verticillioides and grown in natural soils. , 2006, Journal of agricultural and food chemistry.

[31]  R. Davis,et al.  Fusarium Wilt of Cotton: Population Diversity and Implications for Management. , 2006, Plant disease.

[32]  W. Marasas,et al.  The application of high-throughput AFLP's in assessing genetic diversity in Fusarium oxysporum f. sp. cubense. , 2006, Mycological research.

[33]  Floriane L’Haridon,et al.  Colonization of Tomato Root by Pathogenic and Nonpathogenic Fusarium oxysporum Strains Inoculated Together and Separately into the Soil , 2006, Applied and Environmental Microbiology.

[34]  H. Saito,et al.  Phylogenetic relationships between the lettuce root rot pathogen Fusarium oxysporum f. sp. lactucae races 1, 2, and 3 based on the sequence of the intergenic spacer region of its ribosomal DNA , 2005, Journal of General Plant Pathology.

[35]  John Bissett,et al.  An oligonucleotide barcode for species identification in Trichoderma and Hypocrea. , 2005, Fungal genetics and biology : FG & B.

[36]  T. Teraoka,et al.  Three evolutionary lineages of tomato wilt pathogen, Fusarium oxysporum f. sp. lycopersici, based on sequences of IGS, MAT1, and pg1, are each composed of isolates of a single mating type and a single or closely related vegetative compatibility group , 2005, Journal of General Plant Pathology.

[37]  Kouji Hayashi,et al.  Identifying gene-independent noncoding functional elements in the yeast ribosomal DNA by phylogenetic footprinting. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[38]  F. Balloux,et al.  Tackling the population genetics of clonal and partially clonal organisms. , 2005, Trends in ecology & evolution.

[39]  J. Robinson,et al.  Genetic Diversity of Human Pathogenic Members of the Fusarium oxysporum Complex Inferred from Multilocus DNA Sequence Data and Amplified Fragment Length Polymorphism Analyses: Evidence for the Recent Dispersion of a Geographically Widespread Clonal Lineage and Nosocomial Origin , 2004, Journal of Clinical Microbiology.

[40]  Jeong-Ah Seo,et al.  Discontinuous distribution of fumonisin biosynthetic genes in the Gibberella fujikuroi species complex. , 2004, Mycological research.

[41]  Izabela Makalowska,et al.  FUSARIUM-ID v. 1.0: A DNA Sequence Database for Identifying Fusarium , 2004, European Journal of Plant Pathology.

[42]  H. Vanetten,et al.  An analysis of the phylogenetic distribution of the pea pathogenicity genes of Nectria haematococca MPVI supports the hypothesis of their origin by horizontal transfer and uncovers a potentially new pathogen of garden pea: Neocosmospora boniensis , 2004, Current Genetics.

[43]  K. O’Donnell,et al.  Fusarium foetens, a new species pathogenic to begonia elatior hybrids (Begonia x hiemalis) and the sister taxon of the Fusarium oxysporum species complex. , 2004, Mycologia.

[44]  J. Guarro,et al.  Fusarium oxysporum as a Multihost Model for the Genetic Dissection of Fungal Virulence in Plants and Mammals , 2004, Infection and Immunity.

[45]  S. Kroken,et al.  Phylogenomic analysis of type I polyketide synthase genes in pathogenic and saprobic ascomycetes , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[46]  Xavier Messeguer,et al.  DnaSP, DNA polymorphism analyses by the coalescent and other methods , 2003, Bioinform..

[47]  M. Inlow,et al.  Expression profiles of pea pathogenicity (PEP) genes in vivo and in vitro, characterization of the flanking regions of the PEP cluster and evidence that the PEP cluster region resulted from horizontal gene transfer in the fungal pathogen Nectria haematococca , 2003, Current Genetics.

[48]  M. Fisher,et al.  Fungal multilocus sequence typing--it's not just for bacteria. , 2003, Current opinion in microbiology.

[49]  G. Recorbet,et al.  Wanted: pathogenesis-related marker molecules for Fusarium oxysporum. , 2003, The New phytologist.

[50]  M. A. Typas,et al.  IGS sequence variation, group-I introns and the complete nuclear ribosomal DNA of the entomopathogenic fungus Metarhizium: excellent tools for isolate detection and phylogenetic analysis. , 2003, Fungal genetics and biology : FG & B.

[51]  C. Alabouvette,et al.  Fusarium oxysporum and its biocontrol. , 2003, The New phytologist.

[52]  D. Posada Using MODELTEST and PAUP* to Select a Model of Nucleotide Substitution , 2003, Current protocols in bioinformatics.

[53]  F. Kauff,et al.  Phylogeny of the Gyalectales and Ostropales (Ascomycota, Fungi): among and within order relationships based on nuclear ribosomal RNA small and large subunits. , 2002, Molecular phylogenetics and evolution.

[54]  A. Logrieco,et al.  Production of Beauvericin by Different Races of Fusarium Oxysporum F. sp. Melonis, The Fusarium Wilt Agent of Muskmelon , 2002, European Journal of Plant Pathology.

[55]  W. Pearson,et al.  Current Protocols in Bioinformatics , 2002 .

[56]  N. Benhamou,et al.  Ability of Nonpathogenic Fusarium oxysporum Strain Fo47 To Induce Resistance against Pythium ultimum Infection in Cucumber , 2002, Applied and Environmental Microbiology.

[57]  J. Davière,et al.  Evolution of the Fot1 transposons in the genus Fusarium: discontinuous distribution and epigenetic inactivation. , 2002, Molecular biology and evolution.

[58]  K. O’Donnell,et al.  Evolution of Fusarium oxysporum f. sp. vasinfectum Races Inferred from Multigene Genealogies. , 2001, Phytopathology.

[59]  G. Recorbet,et al.  Genetic diversity of Fusarium oxysporum populations isolated from different soils in France. , 2001, FEMS microbiology ecology.

[60]  J. Sambrook,et al.  Molecular Cloning: A Laboratory Manual , 2001 .

[61]  B. Roy,et al.  PATTERNS OF ASSOCIATION BETWEEN CRUCIFERS AND THEIR FLOWER‐MIMIC PATHOGENS: HOST JUMPS ARE MORE COMMON THAN COEVOLUTION OR COSPECIATION , 2001, Evolution; international journal of organic evolution.

[62]  D. Hibbett,et al.  Phylogenetic species recognition and species concepts in fungi. , 2000, Fungal genetics and biology : FG & B.

[63]  K. O’Donnell,et al.  Gene Genealogies and AFLP Analyses in the Fusarium oxysporum Complex Identify Monophyletic and Nonmonophyletic Formae Speciales Causing Wilt and Rot Disease. , 2000, Phytopathology.

[64]  Mark P. Simmons,et al.  Gaps as characters in sequence-based phylogenetic analyses. , 2000, Systematic biology.

[65]  M. A. Typas,et al.  The complete DNA sequence of the nuclear ribosomal RNA gene complex of Verticillium dahliae: intraspecific heterogeneity within the intergenic spacer region. , 2000, Fungal genetics and biology : FG & B.

[66]  F. Martin,et al.  The nuclear rDNA intergenic spacer of the ectomycorrhizal basidiomycete Laccaria bicolor: structural analysis and allelic polymorphism. , 1999, Microbiology.

[67]  T. Katan Current status of vegetative compatibility groups in fusarium oxysporum , 1999, Phytoparasitica.

[68]  J. Manners,et al.  Transfer of a supernumerary chromosome between vegetatively incompatible biotypes of the fungus Colletotrichum gloeosporioides. , 1998, Genetics.

[69]  K. O’Donnell,et al.  New Fusarium species and combinations within the Gibberella fujikuroi species complex , 1998 .

[70]  K. O’Donnell,et al.  Molecular systematics and phylogeography of Gibberella fujikuroi species complex , 1998 .

[71]  R. Ploetz,et al.  Multiple evolutionary origins of the fungus causing Panama disease of banana: concordant evidence from nuclear and mitochondrial gene genealogies. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[72]  M. Garbelotto,et al.  A sequence database for the identification of ectomycorrhizal basidiomycetes by phylogenetic analysis , 1998 .

[73]  C. Waalwijk,et al.  Genetic diversity in Fusarium oxysporum f.sp. dianthi and Fusarium redolens f.sp. dianthi , 1997, European Journal of Plant Pathology.

[74]  C. Alabouvette,et al.  Populations of Nonpathogenic Fusarium oxysporum Associated with Roots of Four Plant Species Compared to Soilborne Populations. , 1997, Phytopathology.

[75]  G. Défago,et al.  Nonpathogenic Fusarium oxysporum Strain Fo47 Induces Resistance to Fusarium Wilt in Tomato. , 1997, Plant disease.

[76]  H. Kistler Genetic Diversity in the Plant-Pathogenic Fungus Fusarium oxysporum. , 1997, Phytopathology.

[77]  K. O’Donnell,et al.  Two divergent intragenomic rDNA ITS2 types within a monophyletic lineage of the fungus Fusarium are nonorthologous. , 1997, Molecular phylogenetics and evolution.

[78]  J. R. Coulson,et al.  Safety of Microorganisms Intended for Pest and Plant Disease Control: A Framework for Scientific Evaluation☆ , 1996 .

[79]  J. Seo,et al.  Isolation and characterization of two new type C fumonisins produced by Fusarium oxysporum. , 1996, Journal of natural products.

[80]  E. Boehm,et al.  Genetic duplication in Fusarium oxysporum , 1995, Current Genetics.

[81]  C. Bult,et al.  TESTING SIGNIFICANCE OF INCONGRUENCE , 1994 .

[82]  P. Boonekamp,et al.  Restriction fragment length polymorphisms, races and vegetative compatibility groups within a worldwide collection of Fusarium oxysporum f.sp. gladioli , 1994 .

[83]  A. Molnár,et al.  Parasexual recombination between vegetatively incompatible strains in Fusarium oxysporum , 1990 .

[84]  W. Marasas,et al.  Moniliformin production and toxicity of different Fusarium species from Southern Africa , 1982, Applied and environmental microbiology.

[85]  G. Armstrong,et al.  Reflections on the Wilt Fusaria , 1975 .

[86]  W. B. Turrill Taxonomy and phylogeny , 1942, The Botanical Review.

[87]  A. Glenn,et al.  Transformation-mediated complementation of a FUM gene cluster deletion in Fusarium verticillioides restores both fumonisin production and pathogenicity on maize seedlings. , 2008, Molecular plant-microbe interactions : MPMI.

[88]  S. Hong,et al.  Phylogeny of Fusarium oxysporum f. sp. lactucae Inferred from Mitochondrial Small Subunit, Elongation Factor 1-alpha, and Nuclear Ribosomal Intergenic Spacer Sequence Data. , 2007, Phytopathology.

[89]  Derrick J. Zwickl Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion , 2006 .

[90]  Paul O. Lewis,et al.  Software manual for PAUPRat: A tool to implement Parsimony Ratchet searches using PAUP* , 2006 .

[91]  van Doorn,et al.  Restriction fragment length polymorphisms , races and vegetative compatibility groups within a worldwide collection of Fusarium oxysporum f . sp . , 2005 .

[92]  M. C. Dignani,et al.  Human fusariosis. , 2004, Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.

[93]  Makoto Kato,et al.  Evolution and phylogenetic utility of alignment gaps within intron sequences of three nuclear genes in bumble bees (Bombus). , 2003, Molecular biology and evolution.

[94]  R. Petersen,et al.  Apparent recombination or gene conversion in the ribosomal ITS region of a Flammulina (Fungi, Agaricales) hybrid. , 2001, Molecular biology and evolution.

[95]  K. Nixon,et al.  The Parsimony Ratchet, a New Method for Rapid Parsimony Analysis , 1999, Cladistics : the international journal of the Willi Hennig Society.

[96]  L. Debao,et al.  Genetic diversity in Fusarium oxysporum. , 2000 .

[97]  Jw Taylor,et al.  THE EVOLUTION OF ASEXUAL FUNGI: Reproduction, Speciation and Classification. , 1999, Annual review of phytopathology.

[98]  R. Ploetz,et al.  Systematic Numbering of Vegetative Compatibility Groups in the Plant Pathogenic Fungus Fusarium oxysporum. , 1998, Phytopathology.

[99]  T. Gordon,et al.  The evolutionary biology of Fusarium oxysporum. , 1997, Annual review of phytopathology.

[100]  D. Hopkins,et al.  Suppression of Fusarium wilt of watermelon by nonpathogenic Fusarium oxysporum and other microorganisms recovered from a disease-suppressive soil. , 1996 .

[101]  R. Ploetz,et al.  Statistical analysis of electrophoretic karyotype variation among vegetative compatibility groups of Fusarium oxysporum f.sp. cubense. , 1994 .

[102]  D. Zamir,et al.  Population structure of Fusarium oxysporum f. sp. lycopersici: Restriction fragment length polymorphisms provide genetic evidence that vegetative compatibility group is an indicator of evolutionary origin , 1993 .

[103]  E. Stackebrandt,et al.  Taxonomy and Phylogeny , 1989 .

[104]  A. Kenny Testing for Significance , 1982 .

[105]  G. Gubanov,et al.  Fusarium wilt of cotton. , 1977 .

[106]  A. W. F. EDWARDS,et al.  Population structure , 1974, Nature.