Predicting MHC class I epitopes in large datasets

[1]  Sneh Lata,et al.  MHCBN 4.0: A database of MHC/TAP binding peptides and T-cell epitopes , 2009, BMC Research Notes.

[2]  V. Brusic,et al.  Evaluation of MHC class I peptide binding prediction servers: Applications for vaccine research , 2008, BMC Immunology.

[3]  Jean-Philippe Vert,et al.  Efficient peptide-MHC-I binding prediction for alleles with few known binders , 2008, Bioinform..

[4]  Bjoern Peters,et al.  HLA class I supertypes: a revised and updated classification , 2008, BMC Immunology.

[5]  Tin Wee Tan,et al.  Methods and protocols for prediction of immunogenic epitopes , 2006, Briefings Bioinform..

[6]  Thomas Lengauer,et al.  DynaPred: A structure and sequence based method for the prediction of MHC class I binding peptide sequences and conformations , 2006, ISMB.

[7]  Ora Schueler-Furman,et al.  Learning MHC I - peptide binding , 2006, ISMB.

[8]  Morten Nielsen,et al.  A Community Resource Benchmarking Predictions of Peptide Binding to MHC-I Molecules , 2006, PLoS Comput. Biol..

[9]  Channa K. Hattotuwagama,et al.  AntiJen: a quantitative immunology database integrating functional, thermodynamic, kinetic, biophysical, and cellular data , 2005, Immunome research.

[10]  Vladimir Brusic,et al.  MULTIPRED: a computational system for prediction of promiscuous HLA binding peptides , 2005, Nucleic Acids Res..

[11]  O. Lund,et al.  The design and implementation of the immune epitope database and analysis resource , 2005, Immunogenetics.

[12]  O. Lund,et al.  The Immune Epitope Database and Analysis Resource: From Vision to Blueprint , 2005, PLoS biology.

[13]  Ellis L Reinherz,et al.  Definition of MHC Supertypes Through Clustering of MHC Peptide Binding Repertoires , 2004, ICARIS.

[14]  D. Flower,et al.  Identifiying Human MHC Supertypes Using Bioinformatic Methods , 2004, The Journal of Immunology.

[15]  S Brunak,et al.  Sensitive quantitative predictions of peptide-MHC binding by a 'Query by Committee' artificial neural network approach. , 2003, Tissue antigens.

[16]  Roland L. Dunbrack,et al.  A graph‐theory algorithm for rapid protein side‐chain prediction , 2003, Protein science : a publication of the Protein Society.

[17]  Els Goulmy,et al.  Competition-based cellular peptide binding assays for 13 prevalent HLA class I alleles using fluorescein-labeled synthetic peptides. , 2003, Human immunology.

[18]  Arne Elofsson,et al.  Prediction of MHC class I binding peptides, using SVMHC , 2002, BMC Bioinformatics.

[19]  Irini A. Doytchinova,et al.  JenPep: a database of quantitative functional peptide data for immunology , 2002, Bioinform..

[20]  H. Rammensee,et al.  SYFPEITHI: database for MHC ligands and peptide motifs , 1999, Immunogenetics.

[21]  Thorsten Joachims,et al.  Making large-scale support vector machine learning practical , 1999 .

[22]  P. Norman,et al.  Immunobiology: The immune system in health and disease , 1995 .

[23]  R. Henderson,et al.  HLA-A2.1-associated peptides from a mutant cell line: a second pathway of antigen presentation. , 1992, Science.

[24]  J A Swets,et al.  Measuring the accuracy of diagnostic systems. , 1988, Science.

[25]  B. Matthews.  Comparison of the predicted and observed secondary structure of T4 phage lysozyme. , 1975, Biochimica et biophysica acta.

[26]  Morten Nielsen,et al.  Pan-specific MHC class I predictors: a benchmark of HLA class I pan-specific prediction methods , 2009, Bioinform..

[27]  Tom Fawcett,et al.  ROC Graphs: Notes and Practical Considerations for Researchers , 2007 .

[28]  O. Lund,et al.  Reliable prediction of T‐cell epitopes using neural networks with novel sequence representations , 2003, Protein science : a publication of the Protein Society.

[29]  Limsoon Wong,et al.  FIMM, a database of functional molecular immunology: update 2002 , 2002, Nucleic Acids Res..

[30]  Kun Yu,et al.  Methods for Prediction of Peptide Binding to MHC Molecules: A Comparative Study , 2002, Molecular medicine.

[31]  Limsoon Wong,et al.  FIMM, a database of functional molecular immunology , 2000, Nucleic Acids Res..

[32]  V. Brusic,et al.  MHCPEP, a database of MHC-binding peptides: update 1997 , 1998, Nucleic Acids Res..

[33]  Vladimir Brusic,et al.  MHCPEP, a database of MHC-binding peptides: update 1996 , 1997, Nucleic Acids Res..