Transcription dynamics.

[1]  Ty C. Voss,et al.  Ultradian hormone stimulation induces glucocorticoid receptor-mediated pulses of gene transcription , 2009, Nature Cell Biology.

[2]  Michael T. McManus,et al.  Chd1 regulates open chromatin and pluripotency of embryonic stem cells , 2009, Nature.

[3]  Robert Tjian,et al.  Imaging transcription in living cells. , 2009, Annual review of biophysics.

[4]  P. Meltzer,et al.  Kinetic complexity of the global response to glucocorticoid receptor action. , 2009, Endocrinology.

[5]  A. Hoffman,et al.  Glucocorticoid Receptor Activation of the Ciz1-Lcn2 Locus by Long Range Interactions* , 2009, Journal of Biological Chemistry.

[6]  William Stafford Noble,et al.  Global mapping of protein-DNA interactions in vivo by digital genomic footprinting , 2009, Nature Methods.

[7]  Ty C. Voss,et al.  Combinatorial probabilistic chromatin interactions produce transcriptional heterogeneity , 2009, Journal of Cell Science.

[8]  Leighton J. Core,et al.  Nascent RNA Sequencing Reveals Widespread Pausing and Divergent Initiation at Human Promoters , 2008, Science.

[9]  D. Larson,et al.  Single-RNA counting reveals alternative modes of gene expression in yeast , 2008, Nature Structural &Molecular Biology.

[10]  James G McNally,et al.  Regulation of TATA-binding protein dynamics in living yeast cells , 2008, Proceedings of the National Academy of Sciences.

[11]  Eric C Greene,et al.  Visualizing one-dimensional diffusion of proteins along DNA , 2008, Nature Structural &Molecular Biology.

[12]  Cem Elbi,et al.  Chromatin remodeling complexes interact dynamically with a glucocorticoid receptor-regulated promoter. , 2008, Molecular biology of the cell.

[13]  Tom Misteli,et al.  Modulation of RNA polymerase assembly dynamics in transcriptional regulation. , 2008, Molecular cell.

[14]  B. Doble,et al.  The ground state of embryonic stem cell self-renewal , 2008, Nature.

[15]  Roger D. Kornberg,et al.  Nucleosome Retention and the Stochastic Nature of Promoter Chromatin Remodeling for Transcription , 2008, Cell.

[16]  T. Misteli,et al.  Global transcription in pluripotent embryonic stem cells. , 2008, Cell stem cell.

[17]  M. Surani,et al.  Chromatin dynamics during epigenetic reprogramming in the mouse germ line , 2008, Nature.

[18]  Paul Wach,et al.  Evidence for a common mode of transcription factor interaction with chromatin as revealed by improved quantitative fluorescence recovery after photobleaching. , 2008, Biophysical journal.

[19]  D. Price.  Poised polymerases: on your mark...get set...go! , 2008, Molecular cell.

[20]  J. Stamatoyannopoulos,et al.  Interaction of the Glucocorticoid Receptor with the Chromatin Landscape , 2008, Molecular cell.

[21]  H. Aburatani,et al.  Cohesin mediates transcriptional insulation by CCCTC-binding factor , 2008, Nature.

[22]  Stephan Sauer,et al.  Cohesins Functionally Associate with CTCF on Mammalian Chromosome Arms , 2008, Cell.

[23]  Rolf Ohlsson,et al.  High-resolution circular chromosome conformation capture assay , 2008, Nature Protocols.

[24]  Corentin Spriet,et al.  Concurrent Fast and Slow Cycling of a Transcriptional Activator at an Endogenous Promoter , 2008, Science.

[25]  Z. Weng,et al.  High-Resolution Mapping and Characterization of Open Chromatin across the Genome , 2008, Cell.

[26]  Watt W Webb,et al.  Intranuclear distribution and local dynamics of RNA polymerase II during transcription activation. , 2007, Molecular cell.

[27]  Ruchir Shah,et al.  RNA polymerase is poised for activation across the genome , 2007, Nature Genetics.

[28]  Manolis Kellis,et al.  RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryo , 2007, Nature Genetics.

[29]  T. Kodadek,et al.  Dynamics of the Hypoxia-inducible Factor-1-Vascular Endothelial Growth Factor Promoter Complex* , 2007, Journal of Biological Chemistry.

[30]  A. Kornblihtt,et al.  The transcriptional cycle of HIV-1 in real-time and live cells , 2007, The Journal of Cell Biology.

[31]  X. Darzacq,et al.  In vivo dynamics of RNA polymerase II transcription , 2007, Nature Structural &Molecular Biology.

[32]  R. Young,et al.  A Chromatin Landmark and Transcription Initiation at Most Promoters in Human Cells , 2007, Cell.

[33]  A. Jacinto,et al.  Drosophila melanogaster embryonic haemocytes: masters of multitasking , 2007, Nature Reviews Molecular Cell Biology.

[34]  William Stafford Noble,et al.  Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project , 2007, Nature.

[35]  J. Elf,et al.  Probing Transcription Factor Dynamics at the Single-Molecule Level in a Living Cell , 2007, Science.

[36]  B. Ingalls,et al.  Deterministic characterization of stochastic genetic circuits , 2007, Proceedings of the National Academy of Sciences.

[37]  T. Kodadek,et al.  The role of the proteasomal ATPases and activator monoubiquitylation in regulating Gal4 binding to promoters. , 2007, Genes & development.

[38]  B. Steensel,et al.  Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture–on-chip (4C) , 2006, Nature Genetics.

[39]  Naokazu Sasaki,et al.  More Than 40,000 Transcripts, Including Novel and Noncoding Transcripts, in Mouse Embryonic Stem Cells , 2006, Stem cells.

[40]  Adam T. Szafran,et al.  Erratum: Estrogen-receptor-α exchange and chromatin dynamics are ligand- and domain-independent (J. Cell Sci. vol. 119 (4101-4116)) , 2006 .

[41]  D. Tranchina,et al.  Stochastic mRNA Synthesis in Mammalian Cells , 2006, PLoS biology.

[42]  Wouter de Laat,et al.  CTCF mediates long-range chromatin looping and local histone modification in the beta-globin locus. , 2006, Genes & development.

[43]  T. Kodadek,et al.  Proteolytic turnover of the Gal4 transcription factor is not required for function in vivo , 2006, Nature.

[44]  W. Webb,et al.  Dynamics of heat shock factor association with native gene loci in living cells , 2006, Nature.

[45]  Peter Hinow,et al.  The DNA binding activity of p53 displays reaction-diffusion kinetics. , 2006, Biophysical journal.

[46]  Yingming Zhao,et al.  HDAC1 acetylation is linked to progressive modulation of steroid receptor-induced gene transcription. , 2006, Molecular cell.

[47]  Tom Misteli,et al.  The road much traveled: trafficking in the cell nucleus. , 2006, Current opinion in cell biology.

[48]  Syuzo Kaneko,et al.  Terminating the transcript: breaking up is hard to do. , 2006, Genes & development.

[49]  T. Misteli,et al.  Hyperdynamic plasticity of chromatin proteins in pluripotent embryonic stem cells. , 2006, Developmental cell.

[50]  Bing Li,et al.  Histone H3 Methylation by Set2 Directs Deacetylation of Coding Regions by Rpd3S to Suppress Spurious Intragenic Transcription , 2005, Cell.

[51]  S. Halford,et al.  Measurement of the contributions of 1D and 3D pathways to the translocation of a protein along DNA. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[52]  Myles A Brown,et al.  Spatial and temporal recruitment of androgen receptor and its coactivators involves chromosomal looping and polymerase tracking. , 2005, Molecular cell.

[53]  Leah Barrera,et al.  A high-resolution map of active promoters in the human genome , 2005, Nature.

[54]  J. Mellor.  The dynamics of chromatin remodeling at promoters. , 2005, Molecular cell.

[55]  C. Carlberg,et al.  Spatio-temporal activation of chromatin on the human CYP24 gene promoter in the presence of 1alpha,25-Dihydroxyvitamin D3. , 2005, Journal of molecular biology.

[56]  T. Elston,et al.  Stochasticity in gene expression: from theories to phenotypes , 2005, Nature Reviews Genetics.

[57]  Roger D Kornberg,et al.  Mediator and the mechanism of transcriptional activation. , 2005, Trends in biochemical sciences.

[58]  Cem Elbi,et al.  Ligand-Specific Dynamics of the Progesterone Receptor in Living Cells and during Chromatin Remodeling In Vitro , 2005, Molecular and Cellular Biology.

[59]  R. Roeder,et al.  Transcriptional regulation and the role of diverse coactivators in animal cells , 2005, FEBS letters.

[60]  M. Groudine,et al.  Proximity among distant regulatory elements at the beta-globin locus requires GATA-1 and FOG-1. , 2005, Molecular cell.

[61]  Jan-Fang Cheng,et al.  Loss of silent-chromatin looping and impaired imprinting of DLX5 in Rett syndrome , 2005, Nature Genetics.

[62]  James G McNally,et al.  Dynamic interactions of a transcription factor with DNA are accelerated by a chromatin remodeller , 2004, EMBO reports.

[63]  Cameron S. Osborne,et al.  Active genes dynamically colocalize to shared sites of ongoing transcription , 2004, Nature Genetics.

[64]  Tom Misteli,et al.  Global Nature of Dynamic Protein-Chromatin Interactions In Vivo: Three-Dimensional Genome Scanning and Dynamic Interaction Networks of Chromatin Proteins , 2004, Molecular and Cellular Biology.

[65]  Hendrikus J Dubbink,et al.  The androgen receptor ligand-binding domain stabilizes DNA binding in living cells. , 2004, Journal of structural biology.

[66]  E. Young,et al.  Cortisol pulsatility and its role in stress regulation and health , 2004, Frontiers in Neuroendocrinology.

[67]  Richard Simon,et al.  In silico simulation of inhibitor drug effects on nuclear factor-kappaB pathway dynamics. , 2004, Molecular Pharmacology.

[68]  R. Pego,et al.  Analysis of binding reactions by fluorescence recovery after photobleaching. , 2004, Biophysical journal.

[69]  J. Marko,et al.  How do site-specific DNA-binding proteins find their targets? , 2004, Nucleic acids research.

[70]  G. Hager,et al.  Rapid periodic binding and displacement of the glucocorticoid receptor during chromatin remodeling. , 2004, Molecular cell.

[71]  James G. McNally,et al.  Rapid Glucocorticoid Receptor Exchange at a Promoter Is Coupled to Transcription and Regulated by Chaperones and Proteasomes , 2004, Molecular and Cellular Biology.

[72]  Cem Elbi,et al.  Molecular chaperones function as steroid receptor nuclear mobility factors. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[73]  D B Kell,et al.  Oscillations in NF-kappaB signaling control the dynamics of gene expression. , 2004, Science.

[74]  Heike Brand,et al.  Estrogen Receptor-α Directs Ordered, Cyclical, and Combinatorial Recruitment of Cofactors on a Natural Target Promoter , 2003, Cell.

[75]  J. T. Kadonaga,et al.  The RNA polymerase II core promoter. , 2003, Annual review of biochemistry.

[76]  J. Ellenberg,et al.  Cyclic, proteasome-mediated turnover of unliganded and liganded ERalpha on responsive promoters is an integral feature of estrogen signaling. , 2003, Molecular cell.

[77]  O. Jänne,et al.  Involvement of Proteasome in the Dynamic Assembly of the Androgen Receptor Transcription Complex* , 2002, The Journal of Biological Chemistry.

[78]  Hiroshi Kimura,et al.  The transcription cycle of RNA polymerase II in living cells , 2002, The Journal of cell biology.

[79]  Erik Splinter,et al.  Looping and interaction between hypersensitive sites in the active beta-globin locus. , 2002, Molecular cell.

[80]  James G McNally,et al.  Dynamic behavior of transcription factors on a natural promoter in living cells , 2002, EMBO reports.

[81]  T. Misteli,et al.  A Kinetic Framework for a Mammalian RNA Polymerase in Vivo , 2002, Science.

[82]  S. McKnight,et al.  NPAS2: A Gas-Responsive Transcription Factor , 2002, Science.

[83]  A. Houtsmuller,et al.  Rapid switching of TFIIH between RNA polymerase I and II transcription and DNA repair in vivo. , 2002, Molecular cell.

[84]  K. Yamamoto,et al.  Disassembly of Transcriptional Regulatory Complexes by Molecular Chaperones , 2002, Science.

[85]  R. Kingston,et al.  Nucleosome Remodeling by the Human SWI/SNF Complex Requires Transient Global Disruption of Histone-DNA Interactions , 2002, Molecular and Cellular Biology.

[86]  D. Sharma,et al.  Ordered recruitment of histone acetyltransferases and the TRAP/Mediator complex to thyroid hormone-responsive promoters in vivo , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[87]  G. Hager,et al.  ATP-Dependent Mobilization of the Glucocorticoid Receptor during Chromatin Remodeling , 2002, Molecular and Cellular Biology.

[88]  A. Hoffmann,et al.  The IkappaB-NF-kappaB signaling module: temporal control and selective gene activation. , 2002, Science.

[89]  T Misteli,et al.  Protein dynamics: implications for nuclear architecture and gene expression. , 2001, Science.

[90]  B. O’Malley,et al.  FRAP reveals that mobility of oestrogen receptor-alpha is ligand- and proteasome-dependent. , 2001, Nature cell biology.

[91]  Myles Brown,et al.  Cofactor Dynamics and Sufficiency in Estrogen Receptor–Regulated Transcription , 2000, Cell.

[92]  J. McNally,et al.  The glucocorticoid receptor: rapid exchange with regulatory sites in living cells. , 2000, Science.

[93]  P. Cook.  The organization of replication and transcription. , 1999, Science.

[94]  D. Auble,et al.  Molecular analysis of the SNF2/SWI2 protein family member MOT1, an ATP-driven enzyme that dissociates TATA-binding protein from DNA , 1997, Molecular and cellular biology.

[95]  R. Conaway,et al.  The RNA polymerase II elongation complex , 1995, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[96]  A. Bird,et al.  Gene number, noise reduction and biological complexity. , 1995, Trends in genetics : TIG.

[97]  T. Perlmann,et al.  Quantitative analysis of the glucocorticoid receptor-DNA interaction at the mouse mammary tumor virus glucocorticoid response element. , 1990, The Journal of biological chemistry.

[98]  Sarah C. R. Elgin,et al.  The chromatin structure of specific genes: I. Evidence for higher order domains of defined DNA sequence , 1979, Cell.