MISTIC: mutual information server to infer coevolution
暂无分享,去创建一个
Cristina Marino Buslje | Elin Teppa | Morten Nielsen | Franco L. Simonetti | Ariel Chernomoretz | M. Nielsen | Elin Teppa | A. Chernomoretz
[1] Steven J. M. Jones,et al. Circos: an information aesthetic for comparative genomics. , 2009, Genome research.
[2] L. C. Martin,et al. Using information theory to search for co-evolving residues in proteins , 2005, Bioinform..
[3] Thomas W. H. Lui,et al. Using multiple interdependency to separate functional from phylogenetic correlations in protein alignments , 2003, Bioinform..
[4] Mario A. Fares,et al. CAPS: coevolution analysis using protein sequences , 2006, Bioinform..
[5] Cristina Marino Buslje,et al. Networks of High Mutual Information Define the Structural Proximity of Catalytic Sites: Implications for Catalytic Residue Identification , 2010, PLoS Comput. Biol..
[6] Dániel Kozma,et al. CMWeb: an interactive on-line tool for analysing residue–residue contacts and contact prediction methods , 2012, Nucleic Acids Res..
[7] Mark Gerstein,et al. An integrated system for studying residue coevolution in proteins , 2008, Bioinform..
[8] Anders Gorm Pedersen,et al. InterMap3D: predicting and visualizing co-evolving protein residues , 2009, Bioinform..
[9] W. Atchley,et al. Correlations among amino acid sites in bHLH protein domains: an information theoretic analysis. , 2000, Molecular biology and evolution.
[10] Cristina Marino Buslje,et al. Correction for phylogeny, small number of observations and data redundancy improves the identification of coevolving amino acid pairs using mutual information , 2009, Bioinform..
[11] Gary D. Bader,et al. Cytoscape Web: an interactive web-based network browser , 2010, Bioinform..
[12] Gregory B. Gloor,et al. Mutual information without the influence of phylogeny or entropy dramatically improves residue contact prediction , 2008, Bioinform..
[13] Morten Nielsen,et al. Seq2Logo: a method for construction and visualization of amino acid binding motifs and sequence profiles including sequence weighting, pseudo counts and two-sided representation of amino acid enrichment and depletion , 2012, Nucleic Acids Res..
[14] E. Birney,et al. Pfam: the protein families database , 2013, Nucleic Acids Res..
[15] Thomas M. Cover,et al. Elements of Information Theory , 2005 .
[16] G. Gloor,et al. Mutual information in protein multiple sequence alignments reveals two classes of coevolving positions. , 2005, Biochemistry.
[17] G. Hong,et al. Nucleic Acids Research , 2015, Nucleic Acids Research.