Genome sequence of the homoacetogenic bacterium Holophaga foetida type strain (TMBS4T)
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S. Spring | N. Kyrpides | H. Klenk | V. Markowitz | S. Lucas | J. Eisen | P. Hugenholtz | A. Lapidus | I. Anderson | Cliff Han | N. Ivanova | K. Liolios | I. Pagani | Krishna Palaniappan | M. Göker | T. Woyke | K. Mavromatis | L. Goodwin | Amrita Pati | M. Nolan | Jan-Fang Cheng | H. Tice | J. Bristow | J. Detter | M. Land | S. Pitluck | Amy Chen | M. Rohde | R. Tapia | N. Mikhailova | E. Brambilla | Brittany Held | T. G. del Rio | Matt Nolan
[1] I-Min A. Chen,et al. The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata , 2011, Nucleic Acids Res..
[2] G. Garrity. Bergey’s Manual® of Systematic Bacteriology , 2012, Springer New York.
[3] W. Haerty,et al. The LysR-type PcaQ protein regulates expression of a protocatechuate-inducible ABC-type transport system in Sinorhizobium meliloti. , 2011, Microbiology.
[4] M. Moran,et al. Bacterial Catabolism of Dimethylsulfoniopropionate (DMSP) , 2011, Front. Microbio..
[5] S. Spring,et al. Complete genome sequence of Mahella australiensis type strain (50-1 BONT) , 2011, Standards in genomic sciences.
[6] Anton Güntsch,et al. The DNA bank network: the start from a german initiative. , 2011, Biopreservation and biobanking.
[7] Rüdiger,et al. Complete genome sequence of Mahella australiensis type strain (50-1 BON T ) , 2011 .
[8] H. Klenk,et al. En route to a genome-based classification of Archaea and Bacteria? , 2010, Systematic and applied microbiology.
[9] Natalia N. Ivanova,et al. GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes , 2010, Nature Methods.
[10] George M. Garrity,et al. NamesforLife BrowserTool takes expertise out of the database and puts it right in the browser , 2010 .
[11] I-Min A. Chen,et al. The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata , 2007, Nucleic Acids Res..
[12] J. C. Thrash,et al. Phylum XVII. Acidobacteria phyl. nov. , 2010 .
[13] Miriam L. Land,et al. Trace: Tennessee Research and Creative Exchange Prodigal: Prokaryotic Gene Recognition and Translation Initiation Site Identification Recommended Citation Prodigal: Prokaryotic Gene Recognition and Translation Initiation Site Identification , 2022 .
[14] Natalia N. Ivanova,et al. A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea , 2009, Nature.
[15] Alexandros Stamatakis,et al. How Many Bootstrap Replicates Are Necessary? , 2009, RECOMB.
[16] Bernard Henrissat,et al. Three Genomes from the Phylum Acidobacteria Provide Insight into the Lifestyles of These Microorganisms in Soils , 2009, Applied and Environmental Microbiology.
[17] Martin Vödisch,et al. The Ether-Cleaving Methyltransferase System of the Strict Anaerobe Acetobacterium dehalogenans: Analysis and Expression of the Encoding Genes , 2008, Journal of bacteriology.
[18] S. Harayama,et al. Acanthopleuribacter pedis gen. nov., sp. nov., a marine bacterium isolated from a chiton, and description of Acanthopleuribacteraceae fam. nov., Acanthopleuribacterales ord. nov., Holophagaceae fam. nov., Holophagales ord. nov. and Holophagae classis nov. in the phylum 'Acidobacteria'. , 2008, International journal of systematic and evolutionary microbiology.
[19] J. Rougemont,et al. A rapid bootstrap algorithm for the RAxML Web servers. , 2008, Systematic biology.
[20] Alla Lapidus,et al. POLISHER: a Tool for Using Ultra Short Reads in Microbial Genome Finishing , 2008 .
[21] E. Birney,et al. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. , 2008, Genome research.
[22] Chris F. Taylor,et al. The minimum information about a genome sequence (MIGS) specification , 2008, Nature Biotechnology.
[23] Pablo N. Hess,et al. An empirical test of the midpoint rooting method , 2007, Biological journal of the Linnean Society. Linnean Society of London.
[24] Peter F. Hallin,et al. RNAmmer: consistent and rapid annotation of ribosomal RNA genes , 2007, Nucleic acids research.
[25] Eoin L. Brodie,et al. Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB , 2006, Applied and Environmental Microbiology.
[26] Michael P. Cummings,et al. PAUP* [Phylogenetic Analysis Using Parsimony (and Other Methods)] , 2004 .
[27] S. Brunak,et al. Improved prediction of signal peptides: SignalP 3.0. , 2004, Journal of molecular biology.
[28] J. Kreft,et al. Demethylation and degradation of phenylmethylethers by the sulfide-methylating homoacetogenic bacterium strain TMBS 4 , 1993, Archives of Microbiology.
[29] K. Finster,et al. Formation of dimethylsulfide and methanethiol from methoxylated aromatic compounds and inorganic sulfide by newly isolated anaerobic bacteria , 1992, Archives of Microbiology.
[30] J. Kreft,et al. Holophaga foetida gen. nov., sp. nov., a new, homoacetogenic bacterium degrading methoxylated aromatic compounds , 2004, Archives of Microbiology.
[31] Sean R. Eddy,et al. Rfam: an RNA family database , 2003, Nucleic Acids Res..
[32] Christopher J. Lee,et al. Multiple sequence alignment using partial order graphs , 2002, Bioinform..
[33] D. Swofford. PAUP*: Phylogenetic analysis using parsimony (*and other methods), Version 4.0b10 , 2002 .
[34] S. Ragsdale,et al. Characterization of a Three-Component Vanillate O-Demethylase from Moorella thermoacetica , 2001, Journal of bacteriology.
[35] A. Krogh,et al. Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. , 2001, Journal of molecular biology.
[36] M. Ashburner,et al. Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.
[37] Wei Qian,et al. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. , 2000, Molecular biology and evolution.
[38] J. Rétey,et al. Cloning, sequencing and heterologous expression of pyrogallol-phloroglucinol transhydroxylase from Pelobacter acidigallici. , 1999, European journal of biochemistry.
[39] D. Lovley,et al. Geothrix fermentans gen. nov., sp. nov., a novel Fe(III)-reducing bacterium from a hydrocarbon-contaminated aquifer. , 1999, International journal of systematic bacteriology.
[40] F. Kaufmann,et al. O-demethylase from Acetobacterium dehalogenans--substrate specificity and function of the participating proteins. , 1998, European journal of biochemistry.
[41] S. Eddy,et al. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. , 1997, Nucleic acids research.
[42] M. Aguirre,et al. Validation of the publication of new names and new combinations previously effectively published outside the IJSB. , 1996, International journal of systematic bacteriology.
[43] Strain Cip,et al. Validation of the publication of new names and new combinations previously effectively published outside the IJSB. List No. 40. , 1992, International journal of systematic bacteriology.
[44] E. Myers,et al. Basic local alignment search tool. , 1990, Journal of molecular biology.
[45] O. Kandler,et al. Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. , 1990, Proceedings of the National Academy of Sciences of the United States of America.
[46] Martin F. Porter,et al. An algorithm for suffix stripping , 1997, Program.