SARS-CoV-2 Titers in Wastewater Are Higher than Expected from Clinically Confirmed Cases

Wastewater surveillance may represent a complementary approach to measure the presence and even prevalence of infectious diseases when the capacity for clinical testing is limited. Moreover, aggregate, population-wide data can help inform modeling efforts. We tested wastewater collected at a major urban treatment facility in Massachusetts and found the presence of SARS-CoV-2 at high titers in the period from March 18 - 25 using RT-qPCR. We then confirmed the identity of the PCR product by direct DNA sequencing. Viral titers observed were significantly higher than expected based on clinically confirmed cases in Massachusetts as of March 25. The reason for the discrepancy is not yet clear, however, and until further experiments are complete, these data do not necessarily indicate that clinical estimates are incorrect. Our approach is scalable and may be useful in modeling the SARS-CoV-2 pandemic and future outbreaks.

[1]  P. Vollmar,et al.  Virological assessment of hospitalized cases of coronavirus disease 2019 , 2020 .

[2]  Y. Manor,et al.  Estimation of polio infection prevalence from environmental surveillance data , 2017, Science Translational Medicine.

[3]  X. Zhu,et al.  Concentration and detection of SARS coronavirus in sewage from Xiao Tang Shan Hospital and the 309th Hospital of the Chinese People's Liberation Army. , 2005, Water science and technology : a journal of the International Association on Water Pollution Research.

[4]  Y. Bi,et al.  Virus shedding patterns in nasopharyngeal and fecal specimens of COVID-19 patients , 2020, medRxiv.

[5]  Maria Hellmér,et al.  Detection of Pathogenic Viruses in Sewage Provided Early Warnings of Hepatitis A Virus and Norovirus Outbreaks , 2014, Applied and Environmental Microbiology.

[6]  S. Blomqvist,et al.  Detection of Imported Wild Polioviruses and of Vaccine-Derived Polioviruses by Environmental Surveillance in Egypt , 2012, Applied and Environmental Microbiology.

[7]  Yan Bai,et al.  Presumed Asymptomatic Carrier Transmission of COVID-19. , 2020, JAMA.

[8]  H. Shan,et al.  Prolonged presence of SARS-CoV-2 viral RNA in faecal samples , 2020, The Lancet Gastroenterology & Hepatology.

[9]  E. Kopel,et al.  Lessons from a public health emergency--importation of wild poliovirus to Israel. , 2014, The New England journal of medicine.

[10]  M. Pallansch,et al.  Insights from a Systematic Search for Information on Designs, Costs, and Effectiveness of Poliovirus Environmental Surveillance Systems , 2017, Food and Environmental Virology.

[11]  M. Matus,et al.  Rapid Assessment of Opioid Exposure and Treatment in Cities Through Robotic Collection and Chemical Analysis of Wastewater , 2020, Journal of Medical Toxicology.

[12]  Tobias Bleicker,et al.  Clinical presentation and virological assessment of hospitalized cases of coronavirus disease 2019 in a travel-associated transmission cluster , 2020, medRxiv.

[13]  P. Vollmar,et al.  Virological assessment of hospitalized patients with COVID-2019 , 2020, Nature.

[14]  K. Kim,et al.  What Is COVID-19? , 2020, Frontiers for Young Minds.

[15]  Ruiyun Li,et al.  Substantial undocumented infection facilitates the rapid dissemination of novel coronavirus (SARS-CoV-2) , 2020, Science.

[16]  H. Doerr,et al.  Stability and inactivation of SARS coronavirus , 2004, Medical Microbiology and Immunology.