Laser-induced fluorescence technique for DNA and proteins separated by capillary electrophoresis.

Recent developments in capillary electrophoresis (CE) in conjunction with laser-induced fluorescence (LIF) using long-wavelength (maximum excitation wavelength>500 nm) dyes are reviewed. These dyes are particularly of interest when conducting the analyses of biopolymers by CE-LIF using He-Ne lasers. These systems are benefited from low background, low costs, easy maintenance, and compactness. Derivatizations of DNA and proteins with fluorescent or nonfluorescent chemicals can be carried out prior to, during, or after separations. With the advantages of sensitivity, rapidity, and high efficiency, the applications of CE-LIF to the analysis of polymerase chain reaction products, DNA sequencing, trace analysis of proteins, and single cell analysis have been presented.

[1]  X. Le,et al.  Development of a tetramethylrhodamine-labeled probe for a capillary electrophoresis-based competitive immunoassay of staphylococcal enterotoxin B , 2002 .

[2]  H. Issaq,et al.  Separation and detection of amino acids and their enantiomers by capillary electrophoresis: A review , 1995, Electrophoresis.

[3]  M. Bowser,et al.  In vivomonitoring of amine neurotransmitters using microdialysis with on‐line capillary electrophoresis , 2001, Electrophoresis.

[4]  W. Tseng,et al.  Separation of dsDNA in the presence of electroosmotic flow under discontinuous conditions , 2001, Electrophoresis.

[5]  W. Tseng,et al.  On-line concentration and separation of proteins by capillary electrophoresis using polymer solutions. , 2000, Analytical chemistry.

[6]  N. Dovichi,et al.  Capillary electrophoresis for the analysis of biopolymers. , 2000, Analytical chemistry.

[7]  G. Mátyás,et al.  Quantification of single nucleotide polymorphisms: A novel method that combines primer extension assay and capillary electrophoresis , 2002, Human mutation.

[8]  E. Yeung,et al.  Automated and integrated system for high-throughput DNA genotyping directly from blood. , 1999, Analytical chemistry.

[9]  J. Khandurina,et al.  Bioanalysis in microfluidic devices. , 2002, Journal of chromatography. A.

[10]  O. Wolfbeis,et al.  Nonimmunological assay of urinary albumin based on laser-induced fluorescence. , 1992, Clinical chemistry.

[11]  N. Guzman,et al.  Laser-induced fluorescence and fluorescence microscopy for capillary electrophoresis zone detection☆ , 1991 .

[12]  L. Kotler,et al.  DNA sequencing up to 1300 bases in two hours by capillary electrophoresis with mixed replaceable linear polyacrylamide solutions. , 2000, Analytical chemistry.

[13]  E. Yeung,et al.  Laser fluorescence detector for capillary electrophoresis , 1992 .

[14]  D E Wemmer,et al.  Stable fluorescent complexes of double-stranded DNA with bis-intercalating asymmetric cyanine dyes: properties and applications. , 1992, Nucleic acids research.

[15]  Stephen N. Smith,et al.  The photophysics of Lissamine rhodamine-B sulphonyl chloride in aqueous solution: implications for fluorescent protein–dye conjugates , 2001 .

[16]  Christoph Heller,et al.  Principles of DNA separation with capillary electrophoresis , 2001, Electrophoresis.

[17]  E. Yeung,et al.  High-throughput comprehensive peptide mapping of proteins by multiplexed capillary electrophoresis. , 2000, Analytical chemistry.

[18]  P Yager,et al.  Concentration and separation of proteins in microfluidic channels on the basis of transverse IEF. , 2001, Analytical chemistry.

[19]  R. Mathies,et al.  Ultra‐high throughput rotary capillary array electrophoresis scanner for fluorescent DNA sequencing and analysis , 1999, Electrophoresis.

[20]  H Li,et al.  Selective detection of individual DNA molecules by capillary polymerase chain reaction. , 2001, Analytical chemistry.

[21]  D. Figeys,et al.  Use of the fluorescent intercalating dyes POPO-3, YOYO-3 and YOYO-1 for ultrasensitive detection of double-stranded DNA separated by capillary electrophoresis with hydroxypropylmethyl cellulose and non-cross-linked polyacrylamide , 1994 .

[22]  C A Boulet,et al.  Indirect laser-induced fluorescence detection for capillary electrophoresis using a violet diode laser. , 2001, Analytical chemistry.

[23]  M. Morris,et al.  Electrophoretic separation of linear and supercoiled DNA in uncoated capillaries. , 1999, Journal of chromatography. A.

[24]  D. J. Harrison,et al.  Red diode laser induced fluorescence detection with a confocal microscope on a microchip for capillary electrophoresis. , 2000, Biosensors & bioelectronics.

[25]  O. Wolfbeis,et al.  Albumin blue 580 fluorescence assay for albumin. , 1997, Analytical biochemistry.

[26]  W. Tseng,et al.  ANALYSIS OF ALBUMINS, USING ALBUMIN BLUE 580, BY CAPILLARY ELECTROPHORESIS AND LASER-INDUCED FLUORESCENCE , 2001 .

[27]  X. Le,et al.  Measuring DNA damage using capillary electrophoresis with laser-induced fluorescence detection. , 2000, Methods.

[28]  X. Estivill,et al.  Rapid sizing of polymorphic microsatellite markers by capillary array electrophoresis. , 1997, Journal of chromatography. A.

[29]  S. J. Wang,et al.  Analysis of large-volume DNA markers and polymerase chain reaction products by capillary electrophoresis in the presence of electroosmotic flow. , 2001, Journal of chromatography. A.

[30]  F. J. Alba,et al.  Green‐light transilluminator for the detection without photodamage of proteins and DNA labeled with different fluorescent dyes , 2001, Electrophoresis.

[31]  J. Landers,et al.  Exploiting sensitive laser-induced fluorescence detection on electrophoretic microchips for executing rapid clinical diagnostics. , 2001, Luminescence : the journal of biological and chemical luminescence.

[32]  Richard P. Haugland,et al.  Handbook of fluorescent probes and research chemicals , 1996 .

[33]  C. Colyer,et al.  Determination of phycobiliproteins by capillary electrophoresis with laser‐induced fluorescence detection , 2001, Electrophoresis.

[34]  Thomas W Vickroy,et al.  In vivo monitoring of amino acids by direct sampling of brain extracellular fluid at ultralow flow rates and capillary electrophoresis , 2002, Journal of Neuroscience Methods.

[35]  Darwin R. Reyes,et al.  Micro total analysis systems. 2. Analytical standard operations and applications. , 2002, Analytical chemistry.

[36]  Routine DNA sequencing of 1000 bases in less than one hour by capillary electrophoresis with replaceable linear polyacrylamide solutions. , 1998, Analytical chemistry.

[37]  S. J. Wang,et al.  Effect of ionic strength, pH and polymer concentration on the separation of DNA fragments in the presence of electroosmotic flow. , 2000, Journal of chromatography. A.

[38]  W. Underberg,et al.  Derivatization trends in capillary electrophoresis: An update , 2002, Electrophoresis.

[39]  Luis Hernández,et al.  Biomedical applications of capillary electrophoresis with laser‐induced fluorescence detection , 2001, Biopharmaceutics & drug disposition.

[40]  J. Jett,et al.  Characteristics of different nucleic acid staining dyes for DNA fragment sizing by flow cytometry. , 1999, Analytical chemistry.

[41]  J. Tsai,et al.  Analysis of Src kinase and protein kinase C activity by capillary electrophoresis and laser-induced fluorescence. , 1999, Analytical biochemistry.

[42]  V. Dolnik Recent developments in capillary zone electrophoresis of proteins , 1999, Electrophoresis.

[43]  N. Dovichi,et al.  Instrumentation for chemical cytometry. , 2000, Analytical chemistry.

[44]  Richard D. Smith,et al.  High‐resolution capillary isoelectric focusing of proteins using highly hydrophilic‐substituted cellulose‐coated capillaries , 2000 .

[45]  A. Tsuji,et al.  Analysis of single-strand conformation polymorphisms by capillary electrophoresis with laser induced fluorescence detection. , 1997, Journal of pharmaceutical and biomedical analysis.

[46]  E. Yeung Study of single cells by using capillary electrophoresis and native fluorescence detection. , 1999, Journal of chromatography. A.

[47]  Thomas M. Yoshida,et al.  Evaluation of different nucleic acid stains for sensitive double-stranded DNA analysis with capillary electrophoretic separation. , 2002, Journal of chromatography. A.

[48]  M. Samsó,et al.  Use of the hydrophobic probe Nile red for the fluorescent staining of protein bands in sodium dodecyl sulfate-polyacrylamide gels. , 1991, Analytical biochemistry.

[49]  J. Westberg,et al.  A liquid core waveguide fluorescence detector for multicapillary electrophoresis applied to DNA sequencing in a 91‐capillary array , 2000, Electrophoresis.

[50]  C. Desruisseaux,et al.  Theory of DNA electrophoresis: A look at some current challenges , 2000, Electrophoresis.

[51]  H. B. Lim,et al.  Simple and sensitive laser‐induced fluorescence detection for capillary electrophoresis and its application to protein separation , 1995, Electrophoresis.

[52]  William E Lee,et al.  Affinity protection chromatography for efficient labeling of antibodies for use in affinity capillary electrophoresis , 2002, Electrophoresis.

[53]  Igor L. Medintz,et al.  High‐performance genetic analysis using microfabricated capillary array electrophoresis microplates , 2001, Electrophoresis.

[54]  N. Dovichi,et al.  Single-cell analysis avoids sample processing bias. , 2000, Journal of chromatography. B, Biomedical sciences and applications.

[55]  C. Riener,et al.  Anomalous fluorescence enhancement of Cy3 and cy3.5 versus anomalous fluorescence loss of Cy5 and Cy7 upon covalent linking to IgG and noncovalent binding to avidin. , 2000, Bioconjugate chemistry.

[56]  Alexander N. Glazer,et al.  Phycobiliproteins — a family of valuable, widely used fluorophores , 1994, Journal of Applied Phycology.

[57]  T. Imasaka,et al.  Micellar electrokinetic chromatography with diode laser‐induced fluorescence detection as a tool for investigating the fluorescence labeling of proteins , 2002, Electrophoresis.

[58]  C. Colyer,et al.  Indocyanine green as a noncovalent, pseudofluorogenic label for protein determination by capillary electrophoresis , 2001, Electrophoresis.

[59]  C. Colyer,et al.  Separation and quantitation of phycobiliproteins using phytic acid in capillary electrophoresis with laser-induced fluorescence detection. , 2002, Journal of chromatography. A.

[60]  A D Stroock,et al.  An integrated fluorescence detection system in poly(dimethylsiloxane) for microfluidic applications. , 2001, Analytical chemistry.

[61]  R. Zare,et al.  Probing single secretory vesicles with capillary electrophoresis. , 1998, Science.

[62]  J. Skeidsvoll,et al.  Analysis of double-stranded DNA by capillary electrophoresis with laser-induced fluorescence detection using the monomeric dye SYBR green I. , 1995, Analytical biochemistry.

[63]  E. Yeung,et al.  Axial-beam laser-excited fluorescence detection in capillary electrophoresis , 1992 .

[64]  K. Kasai,et al.  Fluorescence-labeled peptide pI markers for capillary isoelectric focusing. , 2002, Analytical chemistry.

[65]  Characterization of visible dyes for four-decay fluorescence detection in DNA sequencing. , 1997, Analytical chemistry.

[66]  J P Landers,et al.  Dynamic labeling during capillary or microchip electrophoresis for laser-induced fluorescence detection of protein-SDS complexes without pre- or postcolumn labeling. , 2001, Analytical chemistry.

[67]  Alexander N. Glazer,et al.  Stable dye–DNA intercalation complexes as reagents for high-sensitivity fluorescence detection , 1992, Nature.

[68]  N. Dovichi,et al.  Life and Death of a Single Enzyme Molecule , 1998 .

[69]  D. Schmalzing,et al.  Recent advances in DNA sequencing by capillary and microdevice electrophoresis , 2001, Electrophoresis.

[70]  O. Wolfbeis,et al.  Laser-induced fluorometric determination of albumin using longwave absorbing molecular probes. , 1992, Analytical biochemistry.

[71]  C. J. Lewis,et al.  Cyanine dye labeling reagents: sulfoindocyanine succinimidyl esters. , 1993, Bioconjugate chemistry.

[72]  David R Walt,et al.  Optical imaging fiber-based single live cell arrays: a high-density cell assay platform. , 2002, Analytical chemistry.

[73]  M. Sauer,et al.  Multiplex dye DNA sequencing in capillary gel electrophoresis by diode laser-based time-resolved fluorescence detection. , 1998, Analytical chemistry.

[74]  S. Lillard,et al.  Measurement of single-cell gene expression using capillary electrophoresis. , 2001, Analytical chemistry.

[75]  A. Pingoud,et al.  Influence of fluorophor dye labels on the migration behavior of polymerase chain reaction – amplified short tandem repeats during denaturing capillary electrophoresis , 2001, Electrophoresis.

[76]  H. Lingeman,et al.  Derivatization trends in capillary electrophoresis , 2000, Electrophoresis.

[77]  J H Jett,et al.  Detection of single molecules of phycoerythrin in hydrodynamically focused flows by laser-induced fluorescence. , 1987, Analytical chemistry.

[78]  P. Boček,et al.  Fast separation of DNA sequencing fragments in highly alkaline solutions of linear polyacrylamide using electrophoresis in bare silica capillaries , 2001, Electrophoresis.

[79]  D. Tyrrell,et al.  Detection of duck hepatitis B virus DNA fragments using on-column intercalating dye labeling with capillary electrophoresis-laser-induced fluorescence. , 1999, Journal of chromatography. A.

[80]  D. Armstrong,et al.  Monitoring the migration behavior of living microorganisms in capillary electrophoresis using laser‐induced fluorescence detection with a charge‐coupled device imaging system , 2002, Electrophoresis.

[81]  H. T. Chang,et al.  Stepwise capillary electrophoretic separation of DNA fragments using poly(ethylene oxide) solutions in the presence of electroosmotic flow. , 1999, Journal of chromatography. A.

[82]  Igor L. Medintz,et al.  Energy-transfer cassette labeling for capillary array electrophoresis short tandem repeat DNA fragment sizing. , 2001, Bioconjugate chemistry.

[83]  S. Clark,et al.  High-sensitivity capillary electrophoresis of double-stranded DNA fragments using monomeric and dimeric fluorescent intercalating dyes. , 1994, Analytical chemistry.

[84]  Chih-Ching Huang,et al.  Maximization of injection volumes for DNA analysis in capillary electrophoresis , 2001, Electrophoresis.

[85]  F T Chen,et al.  Analysis of structural specificity in antibody-antigen reactions by capillary electrophoresis with laser-induced fluorescence detection. , 1994, Journal of chromatography. A.

[86]  M. Eggertson,et al.  β‐Galactosidase assay using capillary electrophoresis laser‐induced fluorescence detection and resorufin‐β‐D‐galactopyranoside as substrate , 1999 .

[87]  M. D. Harvey,et al.  Subnanomolar detection limit for sodium dodecyl sulfate — capillary gel electrophoresis using a fluorogenic, noncovalent dye , 1998, Electrophoresis.

[88]  C. Colyer,et al.  Non-covalent labeling of human serum albumin with indocyanine green: a study by capillary electrophoresis with diode laser-induced fluorescence detection. , 1999, Journal of chromatography. B, Biomedical sciences and applications.

[89]  W. Tseng,et al.  Regulation of electroosmotic flow and electrophoretic mobility of proteins for concentration without desalting. , 2001, Journal of chromatography. A.

[90]  E. Yeung,et al.  Separation of hemoglobin variants in single human erythrocytes by capillary electrophoresis with laser-induced native fluorescence detection. , 1995, Journal of chromatography. A.

[91]  R. Meagher,et al.  Multiplexed, high-throughput genotyping by single-base extension and end-labeled free-solution electrophoresis. , 2002, Analytical chemistry.

[92]  M. Morris,et al.  Separation of nucleic acids by capillary electrophoresis in cellulose solutions with mono- and bis-intercalating dyes. , 1994, Analytical chemistry.

[93]  R A Mathies,et al.  Single-molecule fluorescence detection: autocorrelation criterion and experimental realization with phycoerythrin. , 1989, Proceedings of the National Academy of Sciences of the United States of America.