Temporally Constrained Group Sparse Learning for Longitudinal Data Analysis in Alzheimer's Disease

Sparse learning has been widely investigated for analysis of brain images to assist the diagnosis of Alzheimer's disease and its prodromal stage, i.e., mild cognitive impairment. However, most existing sparse learning-based studies only adopt cross-sectional analysis methods, where the sparse model is learned using data from a single time-point. Actually, multiple time-points of data are often available in brain imaging applications, which can be used in some longitudinal analysis methods to better uncover the disease progression patterns. Accordingly, in this paper, we propose a novel temporallyconstrained group sparse learning method aiming for longitudinal analysis with multiple time-points of data. Specifically, we learn a sparse linear regression model by using the imaging data from multiple time-points, where a group regularization term is first employed to group the weights for the same brain region across different time-points together. Furthermore, to reflect the smooth changes between data derived from adjacent time-points, we incorporate two smoothness regularization terms into the objective function, i.e., one fused smoothness term thatrequires that the differences between two successive weight vectors from adjacent time-points should be small, and another output smoothness term thatrequires the differences between outputs of two successive models from adjacent time-points should also be small. We develop an efficient optimization algorithm to solve the proposed objective function. Experimental results on ADNI database demonstrate that, compared with conventional sparse learning-based methods, our proposed method can achieve improved regression performance and also help in discovering disease-related biomarkers.

[1]  W. M. van der Flier,et al.  Longitudinal changes of CSF biomarkers in memory clinic patients , 2007, Neurology.

[2]  Stephen M Smith,et al.  Fast robust automated brain extraction , 2002, Human brain mapping.

[3]  Stephen M. Smith,et al.  Segmentation of brain MR images through a hidden Markov random field model and the expectation-maximization algorithm , 2001, IEEE Transactions on Medical Imaging.

[4]  G. Paxinos,et al.  Atlas of the Human Brain , 2000 .

[5]  A. Convit,et al.  Hippocampal formation glucose metabolism and volume losses in MCI and AD , 2001, Neurobiology of Aging.

[6]  Daoqiang Zhang,et al.  Predicting Future Clinical Changes of MCI Patients Using Longitudinal and Multimodal Biomarkers , 2012, PloS one.

[7]  J. Trojanowski,et al.  Prediction of MCI to AD conversion, via MRI, CSF biomarkers, and pattern classification , 2011, Neurobiology of Aging.

[8]  Dinggang Shen,et al.  journal homepage: www.elsevier.com/locate/ynimg , 2022 .

[9]  Chih-Jen Lin,et al.  LIBSVM: A library for support vector machines , 2011, TIST.

[10]  Kathryn Ziegler-Graham,et al.  Forecasting the global burden of Alzheimer’s disease , 2007, Alzheimer's & Dementia.

[11]  A. Simmons,et al.  Different multivariate techniques for automated classification of MRI data in Alzheimer’s disease and mild cognitive impairment , 2013, Psychiatry Research: Neuroimaging.

[12]  Clifford R. Jack,et al.  Predicting Clinical Scores from Magnetic Resonance Scans in Alzheimer's Disease , 2010, NeuroImage.

[13]  G. Chételat,et al.  Hippocampal subfield volumetry in mild cognitive impairment, Alzheimer's disease and semantic dementia☆ , 2013, NeuroImage: Clinical.

[14]  Marie Chupin,et al.  Automatic classi fi cation of patients with Alzheimer ' s disease from structural MRI : A comparison of ten methods using the ADNI database , 2010 .

[15]  A. Dale,et al.  Alzheimer disease: quantitative structural neuroimaging for detection and prediction of clinical and structural changes in mild cognitive impairment. , 2009, Radiology.

[16]  D. Louis Collins,et al.  Relating one-year cognitive change in mild cognitive impairment to baseline MRI features , 2009, NeuroImage.

[17]  R. Mayeux,et al.  Hippocampal and entorhinal atrophy in mild cognitive impairment , 2007, Neurology.

[18]  Daoqiang Zhang,et al.  Manifold regularized multitask feature learning for multimodality disease classification , 2015, Human brain mapping.

[19]  Daoqiang Zhang,et al.  Multimodal classification of Alzheimer's disease and mild cognitive impairment , 2011, NeuroImage.

[20]  C. Jack,et al.  Hypothetical model of dynamic biomarkers of the Alzheimer's pathological cascade , 2010, The Lancet Neurology.

[21]  Norbert Schuff,et al.  Locally linear embedding (LLE) for MRI based Alzheimer's disease classification , 2013, NeuroImage.

[22]  刘明霞 View-centralized multi-atlas classification for Alzheimer's disease diagnosis , 2015 .

[23]  Andrea Chincarini,et al.  Local MRI analysis approach in the diagnosis of early and prodromal Alzheimer's disease , 2011, NeuroImage.

[24]  Nick C Fox,et al.  Imaging cerebral atrophy: normal ageing to Alzheimer's disease , 2004, The Lancet.

[25]  Dinggang Shen,et al.  Joint estimation of multiple clinical variables of neurological diseases from imaging patterns , 2010, 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

[26]  A. Dale,et al.  CSF Biomarkers in Prediction of Cerebral and Clinical Change in Mild Cognitive Impairment and Alzheimer's Disease , 2010, The Journal of Neuroscience.

[27]  R. Leahy,et al.  Magnetic Resonance Image Tissue Classification Using a Partial Volume Model , 2001, NeuroImage.

[28]  Lei Wang,et al.  Correlations Between Antemortem Hippocampal Volume and Postmortem Neuropathology in AD Subjects , 2004, Alzheimer disease and associated disorders.

[29]  Li Shen,et al.  Cortical surface biomarkers for predicting cognitive outcomes using group l 2,1 norm , 2015, Neurobiology of Aging.

[30]  R. Tibshirani Regression Shrinkage and Selection via the Lasso , 1996 .

[31]  Marc Teboulle,et al.  A Fast Iterative Shrinkage-Thresholding Algorithm for Linear Inverse Problems , 2009, SIAM J. Imaging Sci..

[32]  R. Tibshirani,et al.  Sparsity and smoothness via the fused lasso , 2005 .

[33]  H. Zou,et al.  Regularization and variable selection via the elastic net , 2005 .

[34]  Z. Khachaturian Alzheimer's & Dementia: The Journal of the Alzheimer's Association , 2008, Alzheimer's & Dementia.

[35]  Nick C Fox,et al.  The clinical use of structural MRI in Alzheimer disease , 2010, Nature Reviews Neurology.

[36]  Andrew J. Saykin,et al.  Identifying the Neuroanatomical Basis of Cognitive Impairment in Alzheimer's Disease by Correlation- and Nonlinearity-Aware Sparse Bayesian Learning , 2014, IEEE Transactions on Medical Imaging.

[37]  Alan C. Evans,et al.  A nonparametric method for automatic correction of intensity nonuniformity in MRI data , 1998, IEEE Transactions on Medical Imaging.

[38]  Daoqiang Zhang,et al.  Ensemble sparse classification of Alzheimer's disease , 2012, NeuroImage.

[39]  J. Price,et al.  Mild cognitive impairment represents early-stage Alzheimer disease. , 2001, Archives of neurology.

[40]  Jiayu Zhou,et al.  Modeling disease progression via multi-task learning , 2013, NeuroImage.

[41]  Yuan Qi,et al.  Identifying Neuroimaging and Proteomic Biomarkers for MCI and AD via the Elastic Net , 2011, MBIA.

[42]  Christos Davatzikos,et al.  Baseline and longitudinal patterns of brain atrophy in MCI patients, and their use in prediction of short-term conversion to AD: Results from ADNI , 2009, NeuroImage.

[43]  Simon Duchesne,et al.  Morphological Factor Estimation via High-Dimensional Reduction: Prediction of MCI Conversion to Probable AD , 2011, International journal of Alzheimer's disease.

[44]  R. Petersen,et al.  Cerebrospinal fluid biomarker signature in Alzheimer's disease neuroimaging initiative subjects , 2009, Annals of neurology.

[45]  W. M. van der Flier,et al.  CSF biomarkers and incipient Alzheimer disease in patients with mild cognitive impairment. , 2009, JAMA.

[46]  Jieping Ye,et al.  An efficient algorithm for a class of fused lasso problems , 2010, KDD.

[47]  M. Yuan,et al.  Model selection and estimation in regression with grouped variables , 2006 .

[48]  G. B. Frisoni,et al.  The dynamics of Alzheimer's disease biomarkers in the Alzheimer's Disease Neuroimaging Initiative cohort , 2010, Neurobiology of Aging.

[49]  Paul M. Thompson,et al.  Mapping hippocampal and ventricular change in Alzheimer disease , 2004, NeuroImage.

[50]  Bernard Ng,et al.  Generalized Sparse Regularization with Application to fMRI Brain Decoding , 2011, IPMI.

[51]  Mark Jenkinson,et al.  Structural MRI changes detectable up to ten years before clinical Alzheimer's disease , 2012, Neurobiology of Aging.

[52]  Nick C Fox,et al.  The Alzheimer's disease neuroimaging initiative (ADNI): MRI methods , 2008, Journal of magnetic resonance imaging : JMRI.

[53]  Daoqiang Zhang,et al.  Multi-modal multi-task learning for joint prediction of multiple regression and classification variables in Alzheimer's disease , 2012, NeuroImage.

[54]  Shannon L. Risacher,et al.  Identifying AD-Sensitive and Cognition-Relevant Imaging Biomarkers via Joint Classification and Regression , 2011, MICCAI.

[55]  J. Baron,et al.  Mapping gray matter loss with voxel-based morphometry in mild cognitive impairment , 2002, Neuroreport.

[56]  N. Schuff,et al.  Different regional patterns of cortical thinning in Alzheimer's disease and frontotemporal dementia. , 2006, Brain : a journal of neurology.

[57]  A. Convit,et al.  Atrophy of the medial occipitotemporal, inferior, and middle temporal gyri in non-demented elderly predict decline to Alzheimer’s disease☆ , 2000, Neurobiology of Aging.

[58]  Sung Yong Shin,et al.  Individual subject classification for Alzheimer's disease based on incremental learning using a spatial frequency representation of cortical thickness data , 2012, NeuroImage.

[59]  M. J. Leon,et al.  Longitudinal CSF isoprostane and MRI atrophy in the progression to AD , 2007, Journal of Neurology.

[60]  Nick C. Fox,et al.  Visual ratings of atrophy in MCI: prediction of conversion and relationship with CSF biomarkers , 2013, Neurobiology of Aging.