Biallelic mutations in the ubiquitin ligase RFWD3 cause Fanconi anemia

The WD40-containing E3 ubiquitin ligase RFWD3 has been recently linked to the repair of DNA damage by homologous recombination (HR). Here we have shown that an RFWD3 mutation within the WD40 domain is connected to the genetic disease Fanconi anemia (FA). An individual presented with congenital abnormalities characteristic of FA. Cells from the patient carrying the compound heterozygous mutations c.205_206dupCC and c.1916T>A in RFWD3 showed increased sensitivity to DNA interstrand cross-linking agents in terms of increased chromosomal breakage, reduced survival, and cell cycle arrest in G2 phase. The cellular phenotype was mirrored in genetically engineered human and avian cells by inactivation of RFWD3 or introduction of the patient-derived missense mutation, and the phenotype was rescued by expression of wild-type RFWD3 protein. HR was disrupted in RFWD3-mutant cells as a result of impaired relocation of mutant RFWD3 to chromatin and defective physical interaction with replication protein A. Rfwd3 knockout mice appear to have increased embryonic lethality, are subfertile, show ovarian and testicular atrophy, and have a reduced lifespan resembling that of other FA mouse models. Although RFWD3 mutations have thus far been detected in a single child with FA, we propose RFWD3 as an FA gene, FANCW, supported by cellular paradigm systems and an animal model.

[1]  C. Mathew,et al.  Biallelic mutations in PALB2 cause Fanconi anemia subtype FA-N and predispose to childhood cancer , 2007, Nature Genetics.

[2]  Nobuhiro Nakamura,et al.  Ubiquitin System , 2018, International journal of molecular sciences.

[3]  B. Alter Fanconi anemia and the development of leukemia. , 2014, Best practice & research. Clinical haematology.

[4]  S. Elledge,et al.  FANCI phosphorylation functions as a molecular switch to turn on the Fanconi anemia pathway , 2008, Nature Structural &Molecular Biology.

[5]  A. Auerbach Fanconi anemia diagnosis and the diepoxybutane (DEB) test. , 1993, Experimental hematology.

[6]  Franca Fraternali,et al.  Mutation of the RAD51C gene in a Fanconi anemia–like disorder , 2010, Nature Genetics.

[7]  Hans Joenje,et al.  Biallelic Inactivation of BRCA2 in Fanconi Anemia , 2002, Science.

[8]  Benjamin P. C. Chen,et al.  RING Finger and WD Repeat Domain 3 (RFWD3) Associates with Replication Protein A (RPA) and Facilitates RPA-mediated DNA Damage Response* , 2011, The Journal of Biological Chemistry.

[9]  A. Jankowska,et al.  Complementation of hypersensitivity to DNA interstrand crosslinking agents demonstrates that XRCC2 is a Fanconi anaemia gene , 2016, Journal of Medical Genetics.

[10]  F. Alkuraya,et al.  Exome sequencing reveals a novel Fanconi group defined by XRCC2 mutation , 2012, Journal of Medical Genetics.

[11]  D. Schild,et al.  Mutants of the Five Rad51 Paralogs Recombinational Repair in Knockout Chromosome Instability and Defective , 2022 .

[12]  N. Howlett,et al.  A DUB-less step? Tighten up D-loop , 2016, Cell cycle.

[13]  Yang Xu,et al.  Inhibition of Topoisomerase (DNA) I (TOP1): DNA Damage Repair and Anticancer Therapy , 2015, Biomolecules.

[14]  S. Elledge,et al.  RFWD3-Dependent Ubiquitination of RPA Regulates Repair at Stalled Replication Forks. , 2015, Molecular cell.

[15]  E. Bruford,et al.  Update of the human and mouse Fanconi anemia genes , 2015, Human Genomics.

[16]  Xiaochun Yu,et al.  Poly(ADP-Ribose) Mediates the BRCA2-Dependent Early DNA Damage Response. , 2015, Cell reports.

[17]  J. D. de Winter,et al.  Learning from a paradox: recent insights into Fanconi anaemia through studying mouse models , 2013, Disease Models & Mechanisms.

[18]  B. A. Ballif,et al.  ATM and ATR Substrate Analysis Reveals Extensive Protein Networks Responsive to DNA Damage , 2007, Science.

[19]  T. Fukagawa,et al.  Mcm8 and Mcm9 form a complex that functions in homologous recombination repair induced by DNA interstrand crosslinks. , 2012, Molecular cell.

[20]  A. Auerbach,et al.  Fanconi anemia and its diagnosis. , 2009, Mutation research.

[21]  P. Mombaerts,et al.  Exclusive transmission of the embryonic stem cell‐derived genome through the mouse germline , 2016, Genesis.

[22]  Junjie Chen,et al.  E3 Ligase RFWD3 Participates in Replication Checkpoint Control* , 2011, The Journal of Biological Chemistry.

[23]  J. Soulier,et al.  Biallelic inactivation of REV7 is associated with Fanconi anemia. , 2016, The Journal of clinical investigation.

[24]  Rodney Rothstein,et al.  Repair of strand breaks by homologous recombination. , 2013, Cold Spring Harbor perspectives in biology.

[25]  A. D’Andrea,et al.  How the fanconi anemia pathway guards the genome. , 2009, Annual review of genetics.

[26]  Martin Kircher,et al.  Biallelic mutations in BRCA1 cause a new Fanconi anemia subtype. , 2015, Cancer discovery.

[27]  D. Schindler,et al.  Central nervous system abnormalities in Fanconi anaemia: patterns and frequency on magnetic resonance imaging. , 2015, The British journal of radiology.

[28]  A. Smogorzewska,et al.  SnapShot: Fanconi Anemia and Associated Proteins , 2015, Cell.

[29]  D. Kutler,et al.  Natural history and management of Fanconi anemia patients with head and neck cancer: A 10‐year follow‐up , 2016, The Laryngoscope.

[30]  H. Kurumizaka,et al.  FANCD2 binds CtIP and regulates DNA-end resection during DNA interstrand crosslink repair. , 2014, Cell reports.

[31]  S. Yokoyama,et al.  Preferential binding to branched DNA strands and strand-annealing activity of the human Rad51B, Rad51C, Rad51D and Xrcc2 protein complex. , 2004, Nucleic acids research.

[32]  S. Gabriel,et al.  A Dominant Mutation in Human RAD51 Reveals Its Function in DNA Interstrand Crosslink Repair Independent of Homologous Recombination. , 2015, Molecular cell.

[33]  H. Bluethmann,et al.  Targeted disruption of the MHC class II Aa gene in C57BL/6 mice. , 1993, International immunology.

[34]  J. Lamerdin,et al.  Fanconi Anemia FANCG Protein in Mitigating Radiation- and Enzyme-Induced DNA Double-Strand Breaks by Homologous Recombination in Vertebrate Cells , 2003, Molecular and Cellular Biology.

[35]  Minoru Takata,et al.  Functional Interplay between BRCA2/FancD1 and FancC in DNA Repair* , 2006, Journal of Biological Chemistry.

[36]  A. D’Andrea,et al.  Functional Interaction of Monoubiquitinated FANCD2 and BRCA2/FANCD1 in Chromatin , 2004, Molecular and Cellular Biology.

[37]  H. Hoehn,et al.  Comparative evaluation of diepoxybutane sensitivity and cell cycle blockage in the diagnosis of Fanconi anemia. , 1995, Blood.

[38]  Y. Pommier,et al.  Trapping of PARP1 and PARP2 by Clinical PARP Inhibitors. , 2012, Cancer research.

[39]  Molly C. Kottemann,et al.  Fanconi anaemia and the repair of Watson and Crick DNA crosslinks , 2013, Nature.

[40]  N. Mailand,et al.  Regulation of DNA double-strand break repair by ubiquitin and ubiquitin-like modifiers , 2016, Nature Reviews Molecular Cell Biology.

[41]  J. Tukey Comparing individual means in the analysis of variance. , 1949, Biometrics.

[42]  N. Ameziane,et al.  Genotyping of Fanconi Anemia Patients by Whole Exome Sequencing: Advantages and Challenges , 2012, PloS one.

[43]  David A. Scott,et al.  Genome engineering using the CRISPR-Cas9 system , 2013, Nature Protocols.

[44]  A. D’Andrea,et al.  The Fanconi anaemia pathway: new players and new functions , 2016, Nature Reviews Molecular Cell Biology.

[45]  M. Takata,et al.  Defects in homologous recombination repair behind the human diseases: FA and HBOC. , 2016, Endocrine-related cancer.

[46]  A. D’Andrea,et al.  The USP1/UAF1 Complex Promotes Double-Strand Break Repair through Homologous Recombination , 2011, Molecular and Cellular Biology.

[47]  L. Hood,et al.  A novel Fanconi anaemia subtype associated with a dominant-negative mutation in RAD51 , 2015, Nature Communications.

[48]  L. Thompson,et al.  XRCC3 promotes homology-directed repair of DNA damage in mammalian cells. , 1999, Genes & development.

[49]  J. Shah,et al.  High incidence of head and neck squamous cell carcinoma in patients with Fanconi anemia. , 2003, Archives of otolaryngology--head & neck surgery.

[50]  David J Adams,et al.  Disruption of mouse Slx4, a regulator of structure-specific nucleases, phenocopies Fanconi Anemia , 2011, Nature Genetics.

[51]  J. Qin,et al.  RFWD3–Mdm2 ubiquitin ligase complex positively regulates p53 stability in response to DNA damage , 2010, Proceedings of the National Academy of Sciences.

[52]  A. Auerbach,et al.  Regulation of multiple DNA repair pathways by the Fanconi anemia protein SLX4. , 2013, Blood.