Crystal structure of an ORFan protein (TM1622) from Thermotoga maritima at 1.75 Å resolution reveals a fold similar to the Ran‐binding protein Mog1p

Qingping Xu, S. Sri Krishna, Daniel McMullan, Robert Schwarzenbacher, Mitchell D. Miller, Polat Abdubek, Sanjay Agarwalla, Eileen Ambing, Tamara Astakhova, Herbert L. Axelrod, Jaume M. Canaves, Dennis Carlton, Hsiu-Ju Chiu, Thomas Clayton, Michael DiDonato, Lian Duan, Marc-André Elsliger, Julie Feuerhelm, Slawomir K. Grzechnik, Joanna Hale, Eric Hampton, Gye Won Han, Justin Haugen, Lukasz Jaroszewski, Kevin K. Jin, Heath E. Klock, Mark W. Knuth, Eric Koesema, Andreas Kreusch, Peter Kuhn, Andrew T. Morse, Edward Nigoghossian, Linda Okach, Silvya Oommachen, Jessica Paulsen, Kevin Quijano, Ron Reyes, Christopher L. Rife, Glen Spraggon, Raymond C. Stevens, Henry van den Bedem, Aprilfawn White, Guenter Wolf, Keith O. Hodgson, John Wooley, Ashley M. Deacon, Adam Godzik, Scott A. Lesley, and Ian A. Wilson* Joint Center for Structural Genomics Burnham Institute for Medical Research, La Jolla, California Center for Research in Biological Systems, University of California, San Diego, La Jolla, California Genomics Institute of the Novartis Research Foundation, San Diego, California Stanford Synchrotron Radiation Laboratory, Stanford University, Menlo Park, California The Scripps Research Institute, La Jolla, California

[1]  Adam Godzik,et al.  Multiple flexible structure alignment using partial order graphs , 2005, Bioinform..

[2]  Richard J Morris,et al.  Towards complete validated models in the next generation of ARP/wARP. , 2004, Acta crystallographica. Section D, Biological crystallography.

[3]  Kevin Cowtan,et al.  research papers Acta Crystallographica Section D Biological , 2005 .

[4]  Zukang Feng,et al.  Automated and accurate deposition of structures solved by X-ray diffraction to the Protein Data Bank. , 2004, Acta crystallographica. Section D, Biological crystallography.

[5]  Adam Godzik,et al.  FATCAT: a web server for flexible structure comparison and structure similarity searching , 2004, Nucleic Acids Res..

[6]  David C. Richardson,et al.  MOLPROBITY: structure validation and all-atom contact analysis for nucleic acids and their complexes , 2004, Nucleic Acids Res..

[7]  F. Sato,et al.  Crystal structure of the PsbP protein of photosystem II from Nicotiana tabacum , 2004, EMBO reports.

[8]  Tim J. P. Hubbard,et al.  SCOP database in 2004: refinements integrate structure and sequence family data , 2004, Nucleic Acids Res..

[9]  G Bricogne,et al.  Generation, representation and flow of phase information in structure determination: recent developments in and around SHARP 2.0. , 2003, Acta crystallographica. Section D, Biological crystallography.

[10]  George M Sheldrick,et al.  Substructure solution with SHELXD. , 2002, Acta crystallographica. Section D, Biological crystallography.

[11]  Adam Godzik,et al.  Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[12]  Earl W. Cornell,et al.  An approach to rapid protein crystallization using nanodroplets , 2002 .

[13]  A. Corbett,et al.  Interaction between Ran and Mog1 Is Required for Efficient Nuclear Protein Import* , 2001, The Journal of Biological Chemistry.

[14]  M. Stewart,et al.  1.9 A resolution crystal structure of the Saccharomyces cerevisiae Ran-binding protein Mog1p. , 2000, Journal of molecular biology.

[15]  D Fischer,et al.  Predicting structures for genome proteins. , 1999, Current opinion in structural biology.

[16]  D E McRee,et al.  XtalView/Xfit--A versatile program for manipulating atomic coordinates and electron density. , 1999, Journal of structural biology.

[17]  Thomas C. Terwilliger,et al.  Automated MAD and MIR structure solution , 1999, Acta crystallographica. Section D, Biological crystallography.

[18]  S J Wodak,et al.  SFCHECK: a unified set of procedures for evaluating the quality of macromolecular structure-factor data and their agreement with the atomic model. , 1999, Acta crystallographica. Section D, Biological crystallography.

[19]  David S. Moss,et al.  Error Estimates of Protein Structure Coordinates and Deviations from Standard Geometry by Full-Matrix Refinement of γB- and βB2-Crystallin , 1998 .

[20]  D S Moss,et al.  Error estimates of protein structure coordinates and deviations from standard geometry by full-matrix refinement of gammaB- and betaB2-crystallin. , 1998, Acta crystallographica. Section D, Biological crystallography.

[21]  Thomas L. Madden,et al.  Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. , 1997, Nucleic acids research.

[22]  C. Sander,et al.  Dali: a network tool for protein structure comparison. , 1995, Trends in biochemical sciences.

[23]  Collaborative Computational,et al.  The CCP4 suite: programs for protein crystallography. , 1994, Acta crystallographica. Section D, Biological crystallography.

[24]  Wolfgang Kabsch,et al.  Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants , 1993 .

[25]  G Vriend,et al.  WHAT IF: a molecular modeling and drug design program. , 1990, Journal of molecular graphics.

[26]  B. Matthews Solvent content of protein crystals. , 1968, Journal of molecular biology.