Speckle reduction process based on digital filtering and wavelet compounding in optical coherence tomography for dermatology

Optical Coherence Tomography (OCT) has shown a great potential as a complementary imaging tool in the diagnosis of skin diseases. Speckle noise is the most prominent artifact present in OCT images and could limit the interpretation and detection capabilities. In this work we propose a new speckle reduction process and compare it with various denoising filters with high edge-preserving potential, using several sets of dermatological OCT B-scans. To validate the performance we used a custom-designed spectral domain OCT and two different data set groups. The first group consisted in five datasets of a single B-scan captured N times (with N<20), the second were five 3D volumes of 25 Bscans. As quality metrics we used signal to noise (SNR), contrast to noise (CNR) and equivalent number of looks (ENL) ratios. Our results show that a process based on a combination of a 2D enhanced sigma digital filter and a wavelet compounding method achieves the best results in terms of the improvement of the quality metrics. In the first group of individual B-scans we achieved improvements in SNR, CNR and ENL of 16.87 dB, 2.19 and 328 respectively; for the 3D volume datasets the improvements were 15.65 dB, 3.44 and 1148. Our results suggest that the proposed enhancement process may significantly reduce speckle, increasing SNR, CNR and ENL and reducing the number of extra acquisitions of the same frame.

[1]  Gonzalo Pajares Martinsanz,et al.  A wavelet-based image fusion tutorial , 2004 .

[2]  Radu Ciprian Bilcu,et al.  A modified sigma filter for noise reduction in images , 2005 .

[3]  Andrew M Rollins,et al.  Speckle reduction in optical coherence tomography using angular compounding by B-scan Doppler-shift encoding. , 2009, Journal of biomedical optics.

[4]  J. Fujimoto,et al.  Optical Coherence Tomography , 1991 .

[5]  A. Fercher,et al.  Speckle reduction in optical coherence tomography by frequency compounding. , 2003, Journal of biomedical optics.

[6]  J. Fujimoto,et al.  Speckle reduction in optical coherence tomography images by use of a spatially adaptive wavelet filter. , 2004, Optics letters.

[7]  Carmen A Puliafito,et al.  Automated detection of retinal layer structures on optical coherence tomography images. , 2005, Optics express.

[8]  Zhaoxia Yu,et al.  Speckle attenuation in optical coherence tomography by curvelet shrinkage. , 2009, Optics letters.

[9]  Maciej Wojtkowski,et al.  Efficient Reduction of Speckle Noise in Optical Coherence Tomography References and Links , 2022 .

[10]  Fang Qiu,et al.  Speckle Noise Reduction in SAR Imagery Using a Local Adaptive Median Filter , 2004 .

[11]  M. Larsen,et al.  Enhanced optical coherence tomography imaging by multiple scan averaging , 2005, British Journal of Ophthalmology.

[12]  Jong-Sen Lee,et al.  Digital image smoothing and the sigma filter , 1983, Comput. Vis. Graph. Image Process..

[13]  Zhihua Ding,et al.  Phase-resolved functional optical coherence tomography: simultaneous imaging of in situ tissue structure, blood flow velocity, standard deviation, birefringence, and Stokes vectors in human skin. , 2002, Optics letters.

[14]  Donald T. Miller,et al.  Optical coherence tomography speckle reduction by a partially spatially coherent source. , 2005, Journal of biomedical optics.

[15]  Bruce J. Tromberg,et al.  Three-dimensional speckle suppression in optical coherence tomography based on the curvelet transform , 2010, Optics express.

[16]  Ji Yi,et al.  Structured interference optical coherence tomography. , 2012, Optics letters.

[17]  Daniel L Marks,et al.  Speckle reduction by I-divergence regularization in optical coherence tomography. , 2005, Journal of the Optical Society of America. A, Optics, image science, and vision.

[18]  Joachim Hornegger,et al.  Wavelet denoising of multiframe optical coherence tomography data , 2012, Biomedical optics express.

[19]  M. Binder,et al.  Three‐dimensional multiphoton/optical coherence tomography for diagnostic applications in dermatology , 2013, Journal of biophotonics.

[20]  B. Bouma,et al.  Speckle reduction in optical coherence tomography by "path length encoded" angular compounding. , 2003, Journal of biomedical optics.

[21]  Michael Pircher,et al.  Measurement and imaging of water concentration in human cornea with differential absorption optical coherence tomography. , 2003, Optics express.

[22]  Aydogan Ozcan,et al.  Speckle reduction in optical coherence tomography images using digital filtering. , 2007, Journal of the Optical Society of America. A, Optics, image science, and vision.

[23]  Thierry Blu,et al.  A New SURE Approach to Image Denoising: Interscale Orthonormal Wavelet Thresholding , 2007, IEEE Transactions on Image Processing.

[24]  Mark E. Brezinski,et al.  Evaluation of the adaptive speckle suppression filter for coronary optical coherence tomography imaging , 2000, IEEE Transactions on Medical Imaging.

[25]  Wolfgang Drexler,et al.  3D optical coherence tomography for clinical diagnosis of nonmelanoma skin cancers , 2011 .

[26]  B. Vakoc,et al.  Angle-resolved optical coherence tomography with sequential angular selectivity for speckle reduction. , 2007, Optics express.

[27]  Kostadinka Bizheva,et al.  Speckle noise reduction algorithm for optical coherence tomography based on interval type II fuzzy set. , 2007, Optics express.

[28]  M. Gustafsson Surpassing the lateral resolution limit by a factor of two using structured illumination microscopy , 2000, Journal of microscopy.

[29]  Karolin Baecker,et al.  Two Dimensional Signal And Image Processing , 2016 .

[30]  Thomas Martini Jørgensen,et al.  Enhancing the signal-to-noise ratio in ophthalmic optical coherence tomography by image registration--method and clinical examples. , 2007, Journal of biomedical optics.

[31]  Martin Vetterli,et al.  Adaptive wavelet thresholding for image denoising and compression , 2000, IEEE Trans. Image Process..