Modulation of Mitochondrial DNA Copy Number to Induce Hepatocytic Differentiation of Human Amniotic Epithelial Cells.

Mitochondrial deoxyribonucleic acid (mtDNA) copy number is tightly regulated during pluripotency and differentiation. There is increased demand of cellular adenosine triphosphate (ATP) during differentiation for energy-intensive cell types such as hepatocytes and neurons to meet the cell's functional requirements. During hepatocyte differentiation, mtDNA copy number should be synchronously increased to generate sufficient ATP through oxidative phosphorylation. Unlike bone marrow mesenchymal cells, mtDNA copy number failed to increase by 28 days of differentiation of human amniotic epithelial cells (hAEC) into hepatocyte-like cells (HLC) despite their expression of some end-stage hepatic markers. This was due to higher levels of DNA methylation at exon 2 of POLGA, the mtDNA-specific replication factor. Treatment with a DNA demethylation agent, 5-azacytidine, resulted in increased mtDNA copy number, reduced DNA methylation at exon 2 of POLGA, and reduced hepatic gene expression. Depletion of mtDNA followed by subsequent differentiation did not increase mtDNA copy number, but reduced DNA methylation at exon 2 of POLGA and increased expression of hepatic and pluripotency genes. We encapsulated hAEC in barium alginate microcapsules and subsequently differentiated them into HLC. Encapsulation resulted in no net increase of mtDNA copy number but a significant reduction in DNA methylation of POLGA. RNAseq analysis showed that differentiated HLC express hepatocyte-specific genes but also increased expression of inflammatory interferon genes. Differentiation in encapsulated cells showed suppression of inflammatory genes as well as increased expression of genes associated with hepatocyte function pathways and networks. This study demonstrates that an increase in classical hepatic gene expression can be achieved in HLC through encapsulation, although they fail to effectively regulate mtDNA copy number.

[1]  J. S. John Mitochondrial DNA copy number and replication in reprogramming and differentiation. , 2016 .

[2]  J. S. St. John Mitochondrial DNA copy number and replication in reprogramming and differentiation. , 2016, Seminars in cell & developmental biology.

[3]  William Lee,et al.  Analysis of the Mitochondrial DNA and Its Replicative Capacity in Induced Pluripotent Stem Cells. , 2016, Methods in molecular biology.

[4]  William Lee,et al.  Analysis of Mitochondrial DNA Copy Number and Its Regulation Through DNA Methylation of POLGA. , 2016, Methods in molecular biology.

[5]  William Lee,et al.  The control of mitochondrial DNA replication during development and tumorigenesis , 2015, Annals of the New York Academy of Sciences.

[6]  Kunihiko Kaneko,et al.  Pluripotency, Differentiation, and Reprogramming: A Gene Expression Dynamics Model with Epigenetic Feedback Regulation , 2015, PLoS Comput. Biol..

[7]  William Lee,et al.  Mitochondrial DNA copy number is regulated by DNA methylation and demethylation of POLGA in stem and cancer cells and their differentiated progeny , 2015, Cell Death and Disease.

[8]  J. Adjaye,et al.  Metabolic restructuring and cell fate conversion , 2015, Cellular and Molecular Life Sciences.

[9]  L. Scorrano,et al.  Mitochondria: from cell death executioners to regulators of cell differentiation. , 2014, Trends in cell biology.

[10]  Mohsen Naghavi,et al.  Liver cirrhosis mortality in 187 countries between 1980 and 2010: a systematic analysis , 2014, BMC Medicine.

[11]  Kristopher L. Nazor,et al.  Epigenetic Regulation of Pluripotency and Differentiation , 2014, Circulation research.

[12]  B. Kalionis,et al.  Hepatocyte-like cells derived from human amniotic epithelial cells can be encapsulated without loss of viability or function in vitro. , 2014, Stem cells and development.

[13]  J. S. St. John The control of mtDNA replication during differentiation and development. , 2014, Biochimica et biophysica acta.

[14]  J. Donoghue,et al.  The regulation of mitochondrial DNA copy number in glioblastoma cells , 2013, Cell Death and Differentiation.

[15]  W. Weimar,et al.  Mesenchymal stem cells induce an inflammatory response after intravenous infusion. , 2013, Stem cells and development.

[16]  P. Murthi,et al.  Immunogenicity and immunomodulatory properties of hepatocyte-like cells derived from human amniotic epithelial cells. , 2013, Current stem cell research & therapy.

[17]  Ian A. Trounce,et al.  Mitochondrial DNA copy number is regulated in a tissue specific manner by DNA methylation of the nuclear-encoded DNA polymerase gamma A , 2012, Nucleic acids research.

[18]  P. Verma,et al.  The Effects of Nuclear Reprogramming on Mitochondrial DNA Replication , 2013, Stem Cell Reviews and Reports.

[19]  C. Gargett,et al.  Changes in Culture Expanded Human Amniotic Epithelial Cells: Implications for Potential Therapeutic Applications , 2011, PloS one.

[20]  Aarati R. Ranade,et al.  Hepatic differentiation of amniotic epithelial cells , 2011, Hepatology.

[21]  M. Deutsch,et al.  Barriers to the successful treatment of liver disease by hepatocyte transplantation. , 2010, Journal of hepatology.

[22]  P. Alves,et al.  Extending hepatocyte functionality for drug-testing applications using high-viscosity alginate-encapsulated three-dimensional cultures in bioreactors. , 2010, Tissue engineering. Part C, Methods.

[23]  D. Wallace,et al.  Energetics, epigenetics, mitochondrial genetics. , 2010, Mitochondrion.

[24]  R. Kelly,et al.  Role of mitochondrial DNA replication during differentiation of reprogrammed stem cells. , 2010, The International journal of developmental biology.

[25]  J. S. John,et al.  The Relationship Between Pluripotency and Mitochondrial DNA Proliferation During Early Embryo Development and Embryonic Stem Cell Differentiation , 2009, Stem Cell Reviews and Reports.

[26]  E. Prochownik c-Myc: linking transformation and genomic instability. , 2008, Current molecular medicine.

[27]  Nancy Cheng,et al.  Mature human hepatocytes from ex vivo differentiation of alginate-encapsulated hepatoblasts. , 2008, Tissue engineering. Part A.

[28]  Melinda Larsen,et al.  Extracellular matrix dynamics in development and regenerative medicine , 2008, Journal of Cell Science.

[29]  A. Zorn,et al.  Liver development , 2008 .

[30]  S. Egginton,et al.  Mitochondrial DNA replication during differentiation of murine embryonic stem cells , 2007, Journal of Cell Science.

[31]  W. Kamps,et al.  Evidence Based Selection of Housekeeping Genes , 2007, PloS one.

[32]  M. Pera,et al.  Stem Cells Derived from Human Fetal Membranes Display Multilineage Differentiation Potential , 2007, Biology of reproduction.

[33]  L. Williams,et al.  Differentiation of Transplanted Microencapsulated Fetal Pancreatic Cells , 2007, Transplantation.

[34]  F. Marongiu,et al.  Isolation of amniotic epithelial stem cells. , 2007, Current protocols in stem cell biology.

[35]  Toshio Miki,et al.  Stem Cell Characteristics of Amniotic Epithelial Cells , 2005, Stem cells.

[36]  R. Schneider-Stock,et al.  5-Aza-cytidine is a potent inhibitor of DNA methyltransferase 3a and induces apoptosis in HCT-116 colon cancer cells via Gadd45- and p53-dependent mechanisms. , 2005, The Journal of pharmacology and experimental therapeutics.

[37]  Daniel J. Rader,et al.  The Farnesoid X Receptor A Molecular Link Between Bile Acid and Lipid and Glucose Metabolism , 2005 .

[38]  D. Skalnik,et al.  Histone deacetylase activity is required for embryonic stem cell differentiation , 2004, Genesis.

[39]  Peter Möller,et al.  ADAM12 induces actin cytoskeleton and extracellular matrix reorganization during early adipocyte differentiation by regulating β1 integrin function , 2003, Journal of Cell Science.

[40]  A. Ghosh,et al.  Factors Involved in the Regulation of Type I Collagen Gene Expression: Implication in Fibrosis , 2002, Experimental biology and medicine.

[41]  D. A. Clayton,et al.  Release of replication termination controls mitochondrial DNA copy number after depletion with 2',3'-dideoxycytidine. , 2002, Nucleic acids research.

[42]  Thomas D. Schmittgen,et al.  Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. , 2001, Methods.

[43]  R. Abraham Cell cycle checkpoint signaling through the ATM and ATR kinases. , 2001, Genes & development.

[44]  S. Bonhoeffer,et al.  Cooperation and Competition in the Evolution of ATP-Producing Pathways , 2001, Science.

[45]  Gregory J. Hannon,et al.  Cell biology: Risky immortalization by telomerase , 2000, Nature.

[46]  Jean Y. J. Wang Cancer: New link in a web of human genes , 2000, Nature.

[47]  O. Cussenot,et al.  htert expression correlates with MYC over‐expression in human prostate cancer , 2000, International journal of cancer.

[48]  S. Strom,et al.  Hepatocyte transplantation for the treatment of human disease. , 1999, Seminars in liver disease.

[49]  H. Olsen,et al.  p59OASL, a 2'-5' oligoadenylate synthetase like protein: a novel human gene related to the 2'-5' oligoadenylate synthetase family. , 1998, Nucleic acids research.

[50]  A. Guillouzo,et al.  Liver cell models in in vitro toxicology. , 1998, Environmental health perspectives.

[51]  D. Clayton Nuclear‐mitochondrial intergenomic communication , 1998, BioFactors.

[52]  D. A. Clayton,et al.  RNA‐DNA hybrid formation at the human mitochondrial heavy‐strand origin ceases at replication start sites: an implication for RNA‐DNA hybrids serving as primers. , 1996, The EMBO journal.

[53]  J. Darnell,et al.  Jak-STAT pathways and transcriptional activation in response to IFNs and other extracellular signaling proteins. , 1994, Science.

[54]  D. Russell,et al.  Characterization of human sterol 27-hydroxylase. A mitochondrial cytochrome P-450 that catalyzes multiple oxidation reaction in bile acid biosynthesis. , 1991, The Journal of biological chemistry.

[55]  J. Massagué The TGF-β family of growth and differentiation factors , 1987, Cell.

[56]  F. Sanger,et al.  Sequence and organization of the human mitochondrial genome , 1981, Nature.