Parcellating Cortical Functional Networks in Individuals

The capacity to identify the unique functional architecture of an individual's brain is a crucial step toward personalized medicine and understanding the neural basis of variation in human cognition and behavior. Here we developed a cortical parcellation approach to accurately map functional organization at the individual level using resting-state functional magnetic resonance imaging (fMRI). A population-based functional atlas and a map of inter-individual variability were employed to guide the iterative search for functional networks in individual subjects. Functional networks mapped by this approach were highly reproducible within subjects and effectively captured the variability across subjects, including individual differences in brain lateralization. The algorithm performed well across different subject populations and data types, including task fMRI data. The approach was then validated by invasive cortical stimulation mapping in surgical patients, suggesting potential for use in clinical applications.

[1]  H. Jasper,et al.  Book Reviews: Epilepsy and the Functional Anatomy of the Human Brain , 1954 .

[2]  H. Gastaut,et al.  Epilepsy and the functional anatomy of the human brain , 1954 .

[3]  R. C. Oldfield The assessment and analysis of handedness: the Edinburgh inventory. , 1971, Neuropsychologia.

[4]  D. Swaab,et al.  Sexual differentiation of the human brain. A historical perspective. , 1984, Progress in brain research.

[5]  J. Kaas The organization of neocortex in mammals: implications for theories of brain function. , 1987, Annual review of psychology.

[6]  P. Goldman-Rakic Topography of cognition: parallel distributed networks in primate association cortex. , 1988, Annual review of neuroscience.

[7]  G. Ojemann,et al.  Cortical language localization in left, dominant hemisphere. An electrical stimulation mapping investigation in 117 patients. , 1989, Journal of neurosurgery.

[8]  D. J. Felleman,et al.  Distributed hierarchical processing in the primate cerebral cortex. , 1991, Cerebral cortex.

[9]  B. Biswal,et al.  Functional connectivity in the motor cortex of resting human brain using echo‐planar mri , 1995, Magnetic resonance in medicine.

[10]  Stephen M. Rao,et al.  Human Brain Language Areas Identified by Functional Magnetic Resonance Imaging , 1997, The Journal of Neuroscience.

[11]  L. Garey Brodmann's localisation in the cerebral cortex , 1999 .

[12]  A. Schleicher,et al.  Broca's region revisited: Cytoarchitecture and intersubject variability , 1999, The Journal of comparative neurology.

[13]  A. Dale,et al.  Cortical Surface-Based Analysis II: Inflation, Flattening, and a Surface-Based Coordinate System , 1999, NeuroImage.

[14]  Stephen M. Smith,et al.  Temporal Autocorrelation in Univariate Linear Modeling of FMRI Data , 2001, NeuroImage.

[15]  Michael Brady,et al.  Improved Optimization for the Robust and Accurate Linear Registration and Motion Correction of Brain Images , 2002, NeuroImage.

[16]  M. Corbetta,et al.  Control of goal-directed and stimulus-driven attention in the brain , 2002, Nature Reviews Neuroscience.

[17]  Mark W. Woolrich,et al.  Advances in functional and structural MR image analysis and implementation as FSL , 2004, NeuroImage.

[18]  Maurizio Corbetta,et al.  The human brain is intrinsically organized into dynamic, anticorrelated functional networks. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[19]  D. Bradley,et al.  Structure and function of visual area MT. , 2005, Annual review of neuroscience.

[20]  Jeffrey M. Zacks,et al.  Coherent spontaneous activity accounts for trial-to-trial variability in human evoked brain responses , 2006, Nature Neuroscience.

[21]  K. Amunts,et al.  Towards multimodal atlases of the human brain , 2006, Nature Reviews Neuroscience.

[22]  P. Mahadevan,et al.  An overview , 2007, Journal of Biosciences.

[23]  M. Fox,et al.  Spontaneous fluctuations in brain activity observed with functional magnetic resonance imaging , 2007, Nature Reviews Neuroscience.

[24]  Chun-Chia Kung,et al.  Is Region-of-Interest Overlap Comparison a Reliable Measure of Category Specificity? , 2007, Journal of Cognitive Neuroscience.

[25]  André J. W. van der Kouwe,et al.  Brain morphometry with multiecho MPRAGE , 2008, NeuroImage.

[26]  J. Binder,et al.  A comparison of five fMRI protocols for mapping speech comprehension systems , 2008, Epilepsia.

[27]  Mark W. Woolrich,et al.  Bayesian analysis of neuroimaging data in FSL , 2009, NeuroImage.

[28]  Bruce Fischl,et al.  Accurate and robust brain image alignment using boundary-based registration , 2009, NeuroImage.

[29]  M. Fox,et al.  Clinical Applications of Resting State Functional Connectivity , 2010, Front. Syst. Neurosci..

[30]  Bryan R. Conroy,et al.  Function-based Intersubject Alignment of Human Cortical Anatomy , 2009, Cerebral cortex.

[31]  Michael B. Miller,et al.  How reliable are the results from functional magnetic resonance imaging? , 2010, Annals of the New York Academy of Sciences.

[32]  Costanza Papagno,et al.  Is Preoperative Functional Magnetic Resonance Imaging Reliable for Language Areas Mapping in Brain Tumor Surgery? Review of Language Functional Magnetic Resonance Imaging and Direct Cortical Stimulation Correlation Studies , 2010, Neurosurgery.

[33]  K. Amunts,et al.  Centenary of Brodmann's Map — Conception and Fate , 2022 .

[34]  N. Kanwisher,et al.  New method for fMRI investigations of language: defining ROIs functionally in individual subjects. , 2010, Journal of neurophysiology.

[35]  Marisa O. Hollinshead,et al.  The organization of the human cerebral cortex estimated by intrinsic functional connectivity. , 2011, Journal of neurophysiology.

[36]  Christopher L. Asplund,et al.  The organization of the human cerebellum estimated by intrinsic functional connectivity. , 2011, Journal of neurophysiology.

[37]  Timothy O. Laumann,et al.  Functional Network Organization of the Human Brain , 2011, Neuron.

[38]  Jeffrey R. Binder,et al.  Functional MRI is a valid noninvasive alternative to Wada testing , 2011, Epilepsy & Behavior.

[39]  Rainer Goebel,et al.  Measuring structural–functional correspondence: Spatial variability of specialised brain regions after macro-anatomical alignment , 2012, NeuroImage.

[40]  Steen Moeller,et al.  The Human Connectome Project: A data acquisition perspective , 2012, NeuroImage.

[41]  R Cameron Craddock,et al.  A whole brain fMRI atlas generated via spatially constrained spectral clustering , 2012, Human brain mapping.

[42]  Peter Stiers,et al.  Unravelling the Intrinsic Functional Organization of the Human Lateral Frontal Cortex: A Parcellation Scheme Based on Resting State fMRI , 2012, The Journal of Neuroscience.

[43]  Abraham Z. Snyder,et al.  Human Connectome Project informatics: Quality control, database services, and data visualization , 2013, NeuroImage.

[44]  M. Fox,et al.  Individual Variability in Functional Connectivity Architecture of the Human Brain , 2013, Neuron.

[45]  Abraham Z. Snyder,et al.  Function in the human connectome: Task-fMRI and individual differences in behavior , 2013, NeuroImage.

[46]  R. Buckner,et al.  Cerebellar asymmetry and its relation to cerebral asymmetry estimated by intrinsic functional connectivity. , 2013, Journal of neurophysiology.

[47]  Xenophon Papademetris,et al.  Groupwise whole-brain parcellation from resting-state fMRI data for network node identification , 2013, NeuroImage.

[48]  Essa Yacoub,et al.  The WU-Minn Human Connectome Project: An overview , 2013, NeuroImage.

[49]  Stephen M. Smith,et al.  Spatially constrained hierarchical parcellation of the brain with resting-state fMRI , 2013, NeuroImage.

[50]  Mark Jenkinson,et al.  The minimal preprocessing pipelines for the Human Connectome Project , 2013, NeuroImage.

[51]  Carl D. Hacker,et al.  Resting state network estimation in individual subjects , 2013, NeuroImage.

[52]  Shangkai Gao,et al.  Fast presurgical functional mapping using task-related intracranial high gamma activity. , 2013, Journal of neurosurgery.

[53]  Alvaro Pascual-Leone,et al.  Identification of reproducible individualized targets for treatment of depression with TMS based on intrinsic connectivity , 2013, NeuroImage.

[54]  Mark Jenkinson,et al.  MSM: A new flexible framework for Multimodal Surface Matching , 2014, NeuroImage.

[55]  Jonathan D. Power,et al.  Intrinsic and Task-Evoked Network Architectures of the Human Brain , 2014, Neuron.

[56]  R. Buckner,et al.  Functional Specialization in the Human Brain Estimated By Intrinsic Hemispheric Interaction , 2014, The Journal of Neuroscience.

[57]  B T Thomas Yeo,et al.  Reconfigurable task-dependent functional coupling modes cluster around a core functional architecture , 2014, Philosophical Transactions of the Royal Society B: Biological Sciences.

[58]  Krzysztof J. Gorgolewski,et al.  Making big data open: data sharing in neuroimaging , 2014, Nature Neuroscience.

[59]  Hesheng Liu,et al.  Functional Connectivity Architecture of the Human Brain , 2014, The Neuroscientist : a review journal bringing neurobiology, neurology and psychiatry.

[60]  Timothy O. Laumann,et al.  Parcellating an Individual Subject's Cortical and Subcortical Brain Structures Using Snowball Sampling of Resting-State Correlations , 2013, Cerebral cortex.

[61]  Timothy O. Laumann,et al.  An approach for parcellating human cortical areas using resting-state correlations , 2014, NeuroImage.

[62]  Hongtu Zhu,et al.  Intersubject Variability of and Genetic Effects on the Brain's Functional Connectivity during Infancy , 2014, The Journal of Neuroscience.

[63]  Ravi S. Menon,et al.  Phase based venous suppression in resting-state BOLD GE-fMRI , 2014, NeuroImage.

[64]  R. Buckner,et al.  Resting-state networks link invasive and noninvasive brain stimulation across diverse psychiatric and neurological diseases , 2014, Proceedings of the National Academy of Sciences.

[65]  Y. Jeong,et al.  Influence of ROI selection on resting state functional connectivity: an individualized approach for resting state fMRI analysis , 2015, Front. Neurosci..

[66]  Evan M. Gordon,et al.  Functional System and Areal Organization of a Highly Sampled Individual Human Brain , 2015, Neuron.

[67]  Daniel Rueckert,et al.  Joint Spectral Decomposition for the Parcellation of the Human Cerebral Cortex Using Resting-State fMRI , 2015, IPMI.

[68]  Bruce R. Rosen,et al.  Brain Genomics Superstruct Project initial data release with structural, functional, and behavioral measures , 2015, Scientific Data.

[69]  Timothy O. Laumann,et al.  Generation and Evaluation of a Cortical Area Parcellation from Resting-State Correlations. , 2016, Cerebral cortex.

[70]  Bo Hong,et al.  Combining task-evoked and spontaneous activity to improve pre-operative brain mapping with fMRI , 2016, NeuroImage.