Computational tools for the study of allergens
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V Brusic | N Petrovsky | S M Gendel | M Millot | O Gigonzac | S J Stelman | N. Petrovsky | V. Brusic | S. Gendel | S. J. Stelman | M. Millot | O. Gigonzac
[1] W. Thomas,et al. Structural biology of allergens , 2005, Current allergy and asthma reports.
[2] V Brusic,et al. Allergen databases , 2003, Allergy.
[3] Vladimir Brusic,et al. Prediction of promiscuous peptides that bind HLA class I molecules , 2002, Immunology and cell biology.
[4] Limsoon Wong,et al. FIMM, a database of functional molecular immunology: update 2002 , 2002, Nucleic Acids Res..
[5] E Mjolsness,et al. Machine learning for science: state of the art and future prospects. , 2001, Science.
[6] K. Chua,et al. Acid-induced polymerization of the group 5 mite allergen from Dermatophagoides pteronyssinus. , 2001, Biochemical and biophysical research communications.
[7] M. Gore,et al. Monoclonal antibody raised against envelope glycoprotein peptide neutralizes Japanese encephalitis virus , 2001, Archives of Virology.
[8] F. Shakib,et al. The molecular basis of allergenicity: comparative analysis of the three dimensional structures of diverse allergens reveals a common structural motif , 2001, Molecular pathology : MP.
[9] D. Beezhold,et al. Mutational analysis of the IgE epitopes in the latex allergen Hev b 5. , 2001, The Journal of allergy and clinical immunology.
[10] D. Benjamin,et al. The molecular basis of antigenic cross-reactivity between the group 2 mite allergens. , 2001, The Journal of allergy and clinical immunology.
[11] R. Van Ree,et al. Cross‐reactivity of IgE antibodies to allergens , 2001, Allergy.
[12] R Apweiler,et al. Clustering and analysis of protein families. , 2001, Current opinion in structural biology.
[13] K. David,et al. What establishes a protein as an allergen? , 2001, Journal of chromatography. B, Biomedical sciences and applications.
[14] S. Scheurer,et al. Cross-reactivity within the profilin panallergen family investigated by comparison of recombinant profilins from pear (Pyr c 4), cherry (Pru av 4) and celery (Api g 4) with birch pollen profilin Bet v 2. , 2001, Journal of chromatography. B, Biomedical sciences and applications.
[15] T. Moriyama,et al. Identification of Cyclophilin as an IgE-Binding Protein from Carrots , 2001, International Archives of Allergy and Immunology.
[16] Kenji Matsumoto,et al. Human Mast Cell Transcriptome Project , 2001, International Archives of Allergy and Immunology.
[17] E. Koonin,et al. Adaptations of the helix‐grip fold for ligand binding and catalysis in the START domain superfamily , 2001, Proteins.
[18] S. Taylor,et al. Will genetically modified foods be allergenic? , 2001, The Journal of allergy and clinical immunology.
[19] F. Spertini,et al. Api m 6: a new bee venom allergen. , 2001, The Journal of allergy and clinical immunology.
[20] T. Midoro-Horiuti,et al. Identification of mutations in the genes for the pollen allergens of eastern red cedar (Juniperus virginiana) , 2001, Clinical and experimental allergy : journal of the British Society for Allergy and Clinical Immunology.
[21] H. Dodo,et al. Isolation and molecular characterization of the first genomic clone of a major peanut allergen, Ara h 2. , 2001, The Journal of allergy and clinical immunology.
[22] D. Benjamin,et al. Hydrogen Exchange Nuclear Magnetic Resonance Spectroscopy Mapping of Antibody Epitopes on the House Dust Mite Allergen Der p 2* , 2001, The Journal of Biological Chemistry.
[23] P. Neudecker,et al. Solution Structure of the Major Cherry Allergen Pru av 1 , 2001 .
[24] A. Pomés,et al. Identification of a Novel Cat Allergen – Cystatin , 2001, International Archives of Allergy and Immunology.
[25] R. Van Ree,et al. Lipid Transfer Protein: A Pan-Allergen in Plant-Derived Foods That Is Highly Resistant to Pepsin Digestion , 2001, International Archives of Allergy and Immunology.
[26] J. Malmström,et al. Proteomics -- the protein expression technology to study connective tissue biology. , 2001, Journal of pharmaceutical and biomedical analysis.
[27] S. Wiltshire,et al. Linkage and allelic association of chromosome 5 cytokine cluster genetic markers with atopy and asthma associated traits. , 2001, Genomics.
[28] R. Valenta,et al. Recombinant allergen molecules: tools to study effector cell activation , 2001, Immunological reviews.
[29] X. Baur,et al. B‐cell epitopes of the allergen Chi t 1.01: peptide mapping of epitopes recognized by rabbit, murine, and human antibodies , 2001, Allergy.
[30] K. Schulten,et al. Steered molecular dynamics investigations of protein function. , 2001, Journal of molecular graphics & modelling.
[31] K. Min,et al. HLA‐DRB1*07 may have a susceptibility and DRB1*04 a protective effect upon the development of a sensitization to house dust mite Dermatophagoides pteronyssinus , 2001, Clinical and experimental allergy : journal of the British Society for Allergy and Clinical Immunology.
[32] J. Bodmer,et al. IMGT/HLA Database - a sequence database for the human major histocompatibility complex , 2000, Nucleic Acids Res..
[33] Julia G. Bodmer,et al. IMGT/HLA Database--a sequence database for the human major histocompatibility complex. , 2001, Nucleic acids research.
[34] T. Beaty,et al. Profiling of differential gene expression in activated, allergen-specific human Th2 cells , 2001, Genes and Immunity.
[35] P. Kollman,et al. Biomolecular simulations: recent developments in force fields, simulations of enzyme catalysis, protein-ligand, protein-protein, and protein-nucleic acid noncovalent interactions. , 2001, Annual review of biophysics and biomolecular structure.
[37] G. Myers,et al. Optimally separating sequences. , 2001, Genome informatics. International Conference on Genome Informatics.
[38] A Yoshimori,et al. Automatic epitope recognition in proteins oriented to the system for macromolecular interaction assessment MIAX. , 2001, Genome informatics. International Conference on Genome Informatics.
[39] C. H. Wu,et al. Sequence analysis of the first complete cDNA clone encoding an American cockroach Per a 1 allergen. , 2000, Biochimica et biophysica acta.
[40] J. Yiannias,et al. Contact Allergen Avoidance Program: a topical skin care product database. , 2000, American journal of contact dermatitis : official journal of the American Contact Dermatitis Society.
[41] S O'Malley,et al. Detection of multiple allergen-specific IgEs on microarrays by immunoassay with rolling circle amplification. , 2000, Clinical chemistry.
[42] H. Sewell,et al. Prediction of the interacting surfaces in a trimolecular complex formed between the major dust mite allergen Der p 1, a mouse monoclonal anti-Der p 1 antibody, and its anti-idiotype , 2000, Molecular pathology : MP.
[43] T. P. King,et al. Structure and Biology of Stinging Insect Venom Allergens , 2000, International Archives of Allergy and Immunology.
[44] M. Fernández-Rivas,et al. Lipid‐transfer proteins as potential plant panallergens: cross‐reactivity among proteins of Artemisia pollen, Castanea nut and Rosaceae fruits, with different IgE‐binding capacities , 2000, Clinical and experimental allergy : journal of the British Society for Allergy and Clinical Immunology.
[45] G. Peltz,et al. Identification of complement factor 5 as a susceptibility locus for experimental allergic asthma , 2000, Nature Immunology.
[46] G J Barton,et al. Application of multiple sequence alignment profiles to improve protein secondary structure prediction , 2000, Proteins.
[47] M. Gajhede,et al. Dominant Epitopes and Allergic Cross-Reactivity: Complex Formation Between a Fab Fragment of a Monoclonal Murine IgG Antibody and the Major Allergen from Birch Pollen Bet v 11 , 2000, The Journal of Immunology.
[48] T Sasazuki,et al. Magnitude of structural changes of the T-cell receptor binding regions determine the strength of T-cell antagonism: molecular dynamics simulations of HLA-DR4 (DRB1*0405) complexed with analogue peptide. , 2000, Protein engineering.
[49] R. Van Ree,et al. Lipid Transfer Protein: A Pan-Allergen in Plant-Derived Foods That Is Highly Resistant to Pepsin Digestion , 2000, International Archives of Allergy and Immunology.
[50] E. Huarte,et al. Specific and general HLA-DR binding motifs: comparison of algorithms. , 2000, Human immunology.
[51] Y. Takebe,et al. Inhibition of immunoglobulin E response to Japanese cedar pollen allergen (Cry j 1) in mice by DNA immunization: different outcomes dependent on the plasmid DNA inoculation method , 2000, Immunology.
[52] E. Herman,et al. Mutational analysis of the IgE-binding epitopes of P34/Gly m Bd 30K. , 2000, The Journal of allergy and clinical immunology.
[53] V. Brusic,et al. Melan-A/MART-151–73 represents an immunogenic HLA-DR4-restricted epitope recognized by melanoma-reactive CD4+ T cells , 2000 .
[54] Limsoon Wong,et al. FIMM, a database of functional molecular immunology , 2000, Nucleic Acids Res..
[55] Rolf Apweiler,et al. The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000 , 2000, Nucleic Acids Res..
[56] T. N. Bhat,et al. The Protein Data Bank , 2000, Nucleic Acids Res..
[57] H. Rammensee,et al. SYFPEITHI: database for MHC ligands and peptide motifs , 1999, Immunogenetics.
[58] W. Thomas,et al. Molecular Characterization of the Group 4 House Dust Mite Allergen from Dermatophagoides pteronyssinus and Its Amylase Homologue from Euroglyphus maynei , 1999, International Archives of Allergy and Immunology.
[59] A. Sidoli,et al. Cutting edge: identification of novel T cell epitopes in Lol p5a by computational prediction. , 1999, Journal of immunology.
[60] A S Kolaskar,et al. Prediction of three-dimensional structure and mapping of conformational epitopes of envelope glycoprotein of Japanese encephalitis virus. , 1999, Virology.
[61] L. Caraballo,et al. Structural and Ligand Binding Analysis of Recombinant Blo t 13 Allergen from Blomia tropicalis Mite, a Fatty Acid Binding Protein , 1999, International Archives of Allergy and Immunology.
[62] M. Pirisi,et al. Immunoreactivity to Putative B-Cell Epitopes of Hepatitis G Virus Polyprotein in Viremic and Nonviremic Subjects , 1999, Clinical Diagnostic Laboratory Immunology.
[63] U. Şahin,et al. Generation of tissue-specific and promiscuous HLA ligand databases using DNA microarrays and virtual HLA class II matrices , 1999, Nature Biotechnology.
[64] Yssel,et al. Identification of a highly promiscuous and an HLA allele‐specific T‐cell epitope in the birch major allergen Bet v 1: HLA restriction, epitope mapping and TCR sequence comparisons , 1999, Clinical and experimental allergy : journal of the British Society for Allergy and Clinical Immunology.
[65] K. Barnes,et al. Positional Candidate Gene Approach and Functional Genomics Strategy in Atopy Gene Discovery , 1999, International Archives of Allergy and Immunology.
[66] S Vieths,et al. Cross-reactivity and epitope analysis of Pru a 1, the major cherry allergen. , 1999, Molecular immunology.
[67] R. Djukanović,et al. Application of functional genomics to study of inflammatory airways disease , 1999, Thorax.
[68] J. Wal,et al. Allergy to bovine beta-lactoglobulin: specificity of human IgE to tryptic peptides. , 1999, Clinical and experimental allergy : journal of the British Society for Allergy and Clinical Immunology.
[69] T. Matsuda,et al. Structural characterization of the 16-kDa allergen, RA17, in rice seeds. Prediction of the secondary structure and identification of intramolecular disulfide bridges. , 1999, Bioscience, biotechnology, and biochemistry.
[70] C. Nelson,et al. Structural principles of MHC class II antigen presentation. , 1999, Reviews in immunogenetics.
[71] V. Brusic,et al. Knowledge discovery and data mining in biological databases , 1999, The Knowledge Engineering Review.
[72] M. Santiago,et al. Identification of the Schistosoma japonicum 22.6–kDa Antigen as a Major Target of the Human IgE Response: Similarity of IgE–Binding Epitopes to Allergen Peptides , 1998, International Archives of Allergy and Immunology.
[73] V. Brusic,et al. Neural network-based prediction of candidate T-cell epitopes , 1998, Nature Biotechnology.
[74] W. Puijk,et al. Identification of epitopes within beta lactoglobulin recognised by polyclonal antibodies using phage display and PEPSCAN. , 1998, Journal of immunological methods.
[75] Baur,et al. Analysis of T‐cell reactive regions and HLA‐DR4 binding motifs on the latex allergen Hev b 1 (rubber elongation factor) , 1998, Clinical and experimental allergy : journal of the British Society for Allergy and Clinical Immunology.
[76] Kenneth H. Fasman,et al. Chapter 3 - An introduction to biological sequence analysis , 1998 .
[77] S M Gendel,et al. The use of amino acid sequence alignments to assess potential allergenicity of proteins used in genetically modified foods. , 1998, Advances in food and nutrition research.
[78] Vladimir Brusic,et al. MHCPEP, a database of MHC-binding peptides: update 1996 , 1997, Nucleic Acids Res..
[79] Vladimir Brusic,et al. Prediction of MHC class II-binding peptides using an evolutionary algorithm and artificial neural network , 1998, Bioinform..
[80] S. Romagnani,et al. The Th1/Th2 paradigm. , 1997, Immunology today.
[81] K. Papadopoulos,et al. MHC class I antigen processing pathways. , 1997, Human immunology.
[82] Vladimir Brusic,et al. MHCPEP, a database of MHC-binding peptides: update 1996 , 1997, Nucleic Acids Res..
[83] Rolf Apweiler,et al. The SWISS-PROT protein sequence data bank and its supplement TrEMBL , 1997, Nucleic Acids Res..
[84] J. Lamb,et al. T-cell responses to allergens: epitope-specificity and clinical relevance. , 1996, Immunology today.
[85] P. Travers,et al. Distinct conformations of a peptide bound to HLA-DR1 or DRB5*0101 suggested by molecular modelling. , 1996, International immunology.
[86] S. Taylor,et al. Assessment of the allergenic potential of foods derived from genetically engineered crop plants. , 1996, Critical reviews in food science and nutrition.
[87] A. Lupas. Prediction and analysis of coiled-coil structures. , 1996, Methods in enzymology.
[88] B. Berger,et al. Predicting coiled coils by use of pairwise residue correlations. , 1995, Proceedings of the National Academy of Sciences of the United States of America.
[89] U. Hobohm,et al. A sequence property approach to searching protein databases. , 1995, Journal of molecular biology.
[90] K. Hoffmann‐Sommergruber,et al. Isoforms of Bet v 1, the Major Birch Pollen Allergen, Analyzed by Liquid Chromatography, Mass Spectrometry, and cDNA Cloning (*) , 1995, The Journal of Biological Chemistry.
[91] Z. Nagy,et al. Precise prediction of major histocompatibility complex class II-peptide interaction based on peptide side chain scanning , 1994, The Journal of experimental medicine.
[92] J. Thompson,et al. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. , 1994, Nucleic acids research.
[93] M. V. Van Regenmortel,et al. Predicting antigenic determinants in proteins: looking for unidimensional solutions to a three-dimensional problem? , 1994, Peptide research.
[94] John P. Overington,et al. Comparative modelling of major house dust mite allergen Der p I: structure validation using an extended environmental amino acid propensity table. , 1994, Protein engineering.
[95] H. Zwick,et al. Prediction of sensitization to flour allergens , 1994, Allergy.
[96] M. Kanehisa,et al. A knowledge base for predicting protein localization sites in eukaryotic cells , 1992, Genomics.
[97] Smith Rf,et al. Pattern-induced multi-sequence alignment (PIMA) algorithm employing secondary structure-dependent gap penalties for use in comparative protein modelling. , 1992 .
[98] R. F. Smith,et al. Pattern-induced multi-sequence alignment (PIMA) algorithm employing secondary structure-dependent gap penalties for use in comparative protein modelling. , 1992, Protein engineering.
[99] P. Tongaonkar,et al. A semi‐empirical method for prediction of antigenic determinants on protein antigens , 1990, FEBS letters.
[100] E. Myers,et al. Basic local alignment search tool. , 1990, Journal of molecular biology.
[101] D. Lipman,et al. Improved tools for biological sequence comparison. , 1988, Proceedings of the National Academy of Sciences of the United States of America.
[102] R. Hodges,et al. New hydrophilicity scale derived from high-performance liquid chromatography peptide retention data: correlation of predicted surface residues with antigenicity and X-ray-derived accessible sites. , 1986, Biochemistry.
[103] Ruurd van der Zee,et al. Prediction of sequential antigenic regions in proteins , 1985, FEBS letters.
[104] M S Waterman,et al. Identification of common molecular subsequences. , 1981, Journal of molecular biology.