Prediction of Protein Functions with Gene Ontology and Interspecies Protein Homology Data
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Vladimir Pavlovic | Bud Mishra | Antonina Mitrofanova | V. Pavlovic | B. Mishra | Antonina Mitrofanova
[1] Donald Geman,et al. Stochastic Relaxation, Gibbs Distributions, and the Bayesian Restoration of Images , 1984, IEEE Transactions on Pattern Analysis and Machine Intelligence.
[2] Simon Kasif,et al. Probabilistic Protein Function Prediction from Heterogeneous Genome-Wide Data , 2007, PloS one.
[3] M. Tyers,et al. The GRID: The General Repository for Interaction Datasets , 2003, Genome Biology.
[4] Vladimir Pavlovic,et al. Integrative Protein Function Transfer Using Factor Graphs and Heterogeneous Data Sources , 2008, 2008 IEEE International Conference on Bioinformatics and Biomedicine.
[5] Geoffrey J. Barton,et al. GOtcha: a new method for prediction of protein function assessed by the annotation of seven genomes , 2004, BMC Bioinformatics.
[6] Ting Chen,et al. Mapping gene ontology to proteins based on protein-protein interaction data , 2004, Bioinform..
[7] Stanley Letovsky,et al. Predicting protein function from protein/protein interaction data: a probabilistic approach , 2003, ISMB.
[8] Michael I. Jordan. Graphical Models , 1998 .
[9] Daisuke Kihara,et al. Enhanced automated function prediction using distantly related sequences and contextual association by PFP , 2006, Protein science : a publication of the Protein Society.
[10] Rolf Apweiler,et al. The Proteome Analysis database: a tool for the in silico analysis of whole proteomes , 2003, Nucleic Acids Res..
[11] S. Kasif,et al. Whole-genome annotation by using evidence integration in functional-linkage networks. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[12] Vladimir Pavlovic,et al. Protein classification using probabilistic chain graphs and the Gene Ontology structure , 2006, Bioinform..
[13] Roland Eils,et al. Applying Support Vector Machines for Gene ontology based gene function prediction , 2004, BMC Bioinformatics.
[14] Roded Sharan,et al. Improved network-based identification of protein orthologs , 2008, ECCB.
[15] Ting Chen,et al. An integrated probabilistic model for functional prediction of proteins , 2003, RECOMB '03.
[16] J. Whisstock,et al. Prediction of protein function from protein sequence and structure , 2003, Quarterly Reviews of Biophysics.
[17] B. Schwikowski,et al. A network of protein–protein interactions in yeast , 2000, Nature Biotechnology.
[18] Edmund M. Clarke,et al. Model Checking , 1999, Handbook of Automated Reasoning.
[19] Michael I. Jordan,et al. Protein Molecular Function Prediction by Bayesian Phylogenomics , 2005, PLoS Comput. Biol..
[20] Andreas Martin Lisewski,et al. Graph sharpening plus graph integration: a synergy that improves protein functional classification , 2007, Bioinform..
[21] Bernhard Schölkopf,et al. Fast protein classification with multiple networks , 2005, ECCB/JBI.
[22] B. Rost,et al. Comparing function and structure between entire proteomes , 2001, Protein science : a publication of the Protein Society.
[23] Janez Demsar,et al. Statistical Comparisons of Classifiers over Multiple Data Sets , 2006, J. Mach. Learn. Res..
[24] Simon Kasif,et al. Systems Biology via Redescription and Ontologies (III): Protein Classification Using Malaria Parasite's Temporal Transcriptomic Profiles , 2008, 2008 IEEE International Conference on Bioinformatics and Biomedicine.