Current approaches to macromolecular crystallization.

Given our current expertise, and the certain future developments in genetically altering organisms to produce proteins of modified structure and function, the concept of protein engineering is nearing reality. Similarly, our ability to describe and utilize protein structure and to define interactions with ligands has made possible the rational design of new drugs and pharmacological agents. Even in the absence of any intention toward applied use or value, the correlation of regulation, mechanism, and function of proteins with their detailed molecular structure has now become a primary concern of modern biochemistry and molecular biology. At the present time, there are numerous physical-chemical approaches that yield information regarding macromolecular structure. Some of these methods, such as NMR and molecular dynamics, are becoming increasingly valuable in defining detailed protein structure, particularly for lower-molecularmass proteins. There is, however, only one general technique that yields a detailed and precise description, in useful mathematical terms, of a macromolecule’s structure, a description that can serve as a basis for drug design, and an intelligent guide for protein engineering. The method is X-ray diffraction analysis of single crystals of proteins, nucleic acids, and their complexes with one another and with conventional small molecules. Some inspirational examples of representative crystals are shown in Fig. 1 - 3. In the past 20 years, the practice of X-ray crystallography has made enormous strides. Nearly all of the critical and timeconsuming components of the technique have been improved, accelerated, and refined. X-ray crystallography today is not simply an awesome method used by physical chemists to reveal the vast beauty of macromolecular architecture; it is a practical, reliable, and relatively rapid means to obtain straightforward answers to perplexing questions. X-ray diffraction data that once required years to obtain, can now be collected in a matter of weeks, even days in some cases. Computers of extraordinary speed and capacity are now common tools as are computer graphics systems of a versatility and cleverness that would have been unimaginable only a few years ago. Software, too, exists that is sophisticated yet friendly, flexible yet reliable, and readily available to anyone in need of it. The question, then, is where does the problem lie? What prevents the full utilization and exploitation of this enormously powerful approach. The answer, of course, is that for application of the method to a particular macromolecule, the protein or nucleic acid

[1]  W. Ray,et al.  A simple procedure for removing contaminating aldehydes and peroxides from aqueous solutions of polyethylene glycols and of nonionic detergents that are based on the polyoxyethylene linkage. , 1985, Analytical biochemistry.

[2]  A. McPherson,et al.  Crystallization of proteins from polyethylene glycol. , 1976, The Journal of biological chemistry.

[3]  N. Madsen,et al.  Improvement of limit of diffraction and useful X-ray lifetime of crystals of glycogen debranching enzyme , 1986 .

[4]  A. Rich,et al.  X-ray crystallographic analysis of swine pancreas -amylase. , 1972, Biochimica et biophysica acta.

[5]  E. Meehan,et al.  Control of nucleation and growth in protein crystal growth , 1988 .

[6]  D. Harker,et al.  Crystalline forms of bovine pancreatic ribonuclease. Some new modifications , 1962 .

[7]  M. Kunitz CRYSTALLINE INORGANIC PYROPHOSPHATASE ISOLATED FROM BAKER'S YEAST , 1952, The Journal of general physiology.

[8]  J. Glusker,et al.  Crystal Structure Analysis: A Primer , 1972 .

[9]  J. Séquaris,et al.  Principles of Protein , 1980 .

[10]  G. Eichele,et al.  Diffraction methods for biological macromolecules. Seed enlargement and repeated seeding. , 1985, Methods in enzymology.

[11]  B. Lorber,et al.  The role of purification in the crystallization of proteins and nucleic acids , 1986 .

[12]  A. McPherson Interactions of Biological Macromolecules Visualized by X-ray Crystallography , 1987 .

[13]  J. Astier,et al.  Crystallization mechanisms in solution , 1988 .

[14]  Charles W. Carter,et al.  Statistical design of experiments for protein crystal growth and the use of a precrystallization assay , 1988 .

[15]  D. Harker,et al.  Crystalline forms of bovine pancreatic ribonuclease: techniques of preparation, unit cells, and space groups , 1956 .

[16]  H. Miers,et al.  The spontaneous crystallisation of binary mixtures.— Experiments on Salol and Betol , 1907 .

[17]  A. P. Kasatkin,et al.  Growing Crystals from Solution , 1970 .

[18]  G. Feher,et al.  On the crystallization of proteins. , 1978, Journal of molecular biology.

[19]  G. Gilliland A biological macromolecule crystallization database: A basis for a crystallization strategy , 1988 .

[20]  Jan Hermans,et al.  Excluded‐volume theory of polymer–protein interactions based on polymer chain statistics , 1982 .

[21]  D. W. Green,et al.  Twofold symmetry of the β-lactoglobulin molecule in crystals , 1959 .

[22]  Georg E. Schulz,et al.  Principles of Protein Structure , 1979 .

[23]  J. Richardson,et al.  The anatomy and taxonomy of protein structure. , 1981, Advances in protein chemistry.

[24]  A Hampel,et al.  Single Crystals of Transfer RNA from Formylmethionine and Phenylalanine Transfer RNA's , 1968, Science.

[25]  V. H. Yost,et al.  Preliminary investigations of protein crystal growth using the Space Shuttle , 1986 .

[26]  A. W. Hanson,et al.  The three-dimensional structure of ribonuclease-S. Interpretation of an electron density map at a nominal resolution of 2 A. , 1970, The Journal of biological chemistry.

[27]  P. Weber,et al.  An investigation of protein crystallization parameters using successive automated grid searches (SAGS) , 1988 .

[28]  A. McPherson,et al.  The growth and preliminary investigation of protein and nucleic acid crystals for X-ray diffraction analysis. , 2006, Methods of biochemical analysis.

[29]  F. Jurnak Induction of elongation factor Tu-GDP crystal polymorphism by polyethylene glycol contaminants. , 1985, Journal of molecular biology.

[30]  H. Miers,et al.  XLVII.—The refractive indices of crystallising solutions, with especial reference to the passage from the metastable to the labile condition , 1906 .

[31]  Emil L. Smith,et al.  Cucurbit seed globulins. 1. Amino acid composition and preliminary tests of nutritive value. , 1941 .

[32]  J. Risler,et al.  Crystallisation of trypsin‐modified methionyl‐tRNA synthetase from Escherichia coli , 1971, FEBS letters.

[33]  A. Rich,et al.  Preliminary study of B. subtilis alpha-amylase crystals by electron microscopy and optical diffraction. , 1973, Journal of ultrastructure research.

[34]  R. Oppermann Proteins, amino acids and peptides , 1943 .

[35]  T. Bücher,et al.  Crystallized enzymes from the myogen of rabbit skeletal muscle. , 1960, Advances in protein chemistry.

[36]  F. Jurnak,et al.  Biochemical and structural studies of the tetragonal crystalline modification of the Escherichia coli elongation factor Tu. , 1980, The Journal of biological chemistry.

[37]  H. Eklund,et al.  Micro diffusion cells for the growth of single protein crystals by means of equilibrium dialysis. , 1968, Archives of biochemistry and biophysics.

[38]  B. Weber,et al.  A modified microdiffusion procedure for the growth of single protein crystals by concentration-gradient equilibrium dialysis. , 1970, Archives of biochemistry and biophysics.

[39]  J. Lee,et al.  Preferential solvent interactions between proteins and polyethylene glycols. , 1981, The Journal of biological chemistry.

[40]  M. V. King A LOW-RESOLUTION STRUCTURAL MODEL FOR CUBIC GLUCAGON BASED ON PACKING OF CYLINDERS. , 1965, Journal of molecular biology.

[41]  EDWIN C. Webb The Enzymes , 1961, Nature.

[42]  B. Matthews Solvent content of protein crystals. , 1968, Journal of molecular biology.

[43]  Alexander McPherson,et al.  [5]Crystallization of macromolecules: General principles , 1985 .

[44]  T. Arakawa,et al.  Mechanism of protein precipitation and stabilization by co-solvents , 1988 .

[45]  F. Jurnak,et al.  Characterization of precrystallization aggregation of canavalin by dynamic light scattering. , 1990, Biophysical journal.

[46]  J. Gillis,et al.  Crystal Structure Analysis , 1960 .

[47]  Y. Hatefi,et al.  Solubilization of particulate proteins and nonelectrolytes by chaotropic agents. , 1969, Proceedings of the National Academy of Sciences of the United States of America.

[48]  K. Bailey Some methods for the preparation of large protein crystals , 1942 .

[49]  G. Eichele,et al.  Repeated seeding technique for growing large single crystals of proteins. , 1981, Journal of molecular biology.

[50]  F R Salemme,et al.  A free interface diffusion technique for the crystallization of proteins for x-ray crystallography. , 1972, Archives of biochemistry and biophysics.

[51]  Bence-Jones proteins and light chains of immunoglobulins. V. X-ray crystallographic investigation of the amino-terminal half of a kappa Bence-Jones protein. , 1970, The Journal of biological chemistry.

[52]  A. McPherson,et al.  Preliminary diffraction data for crystals of ribonucleases A and B and their complexes with deoxy(pA)4 and deoxy(pA)6. , 1982, The Journal of biological chemistry.

[53]  Marc L. Pusey,et al.  Growth kinetics of tetragonal lysozyme crystals , 1986 .

[54]  J. L. Smith,et al.  Improving the quality of protein crystals through purification by isoelectric focusing. , 1982, The Journal of biological chemistry.

[55]  P. Shlichta,et al.  Heterogeneous and Epitaxial Nucleation of Protein Crystals on Mineral Surfaces , 1988, Science.

[56]  E. Baker,et al.  X-ray diffraction data on some crystalline varieties of insulin. , 1970, Journal of molecular biology.

[57]  F. Rosenberger,et al.  Inorganic and protein crystal growth - similarities and differences , 1986 .

[58]  A. McPherson,et al.  Preliminary structure analysis of canavalin from jack bean. , 1975, Archives of biochemistry and biophysics.

[59]  C. Bracker,et al.  Polyethylene glycol: Catalytic effect on the crystallization of phosphoglucomutase at high salt concentration☆ , 1986 .

[60]  K. Bailey A Crystalline Albumin Component of Skeletal Muscle , 1940, Nature.

[61]  Marc L. Pusey,et al.  Preliminary investigations into solutal flow about growing tetragonal lysozyme crystals , 1988 .

[62]  M. Zeppezauer [24] Formation of large crystals , 1971 .

[63]  R. Simmons,et al.  Crystal forms of -lactoglobulin , 1965 .

[64]  S. Granick FERRITIN I. PHYSICAL AND CHEMICAL PROPERTIES OF HORSE SPLEEN FERRITIN , 1942 .

[65]  A. McPherson,et al.  An experiment regarding crystallization of soluble proteins in the presence of beta-octyl glucoside. , 1986, The Journal of biological chemistry.

[66]  Alexander McPherson,et al.  Science in Pictures: Macromolecular Crystals , 1989 .

[67]  R. Feigelson The relevance of small molecule crystal growth theories and techniques to the growth of biological macromolecules , 1988 .