Automated Bird Counting with Deep Learning for Regional Bird Distribution Mapping

Simple Summary To detect changes in migrating bird populations that are usually gradual, regular counts of the flocks should be carried out. This is vital for giving more precise management decisions and taking preventive actions when necessary. Traditional counting methods are widely used. However, these methods can be expensive, time-consuming, and highly dependent on the mental and physical status of the observer and environmental factors. Taking these uncertainties into account, we aimed at taking the advantage of the advances in the artificial intelligence (AI) field for a more standardized counting action. The study has been practically initiated 10 years ago by beginning to take photos on a yearly basis in predefined regions of Turkey. After a large collection of bird photos had been gathered, we predicted the bird counts in photo locations from images by making strong use of AI. Finally, we used these counts to produce several bird distribution maps for further analysis. Our results showed the potential of learning computers in support of real-world bird monitoring applications. Abstract A challenging problem in the field of avian ecology is deriving information on bird population movement trends. This necessitates the regular counting of birds which is usually not an easily-achievable task. A promising attempt towards solving the bird counting problem in a more consistent and fast way is to predict the number of birds in different regions from their photos. For this purpose, we exploit the ability of computers to learn from past data through deep learning which has been a leading sub-field of AI for image understanding. Our data source is a collection of on-ground photos taken during our long run of birding activity. We employ several state-of-the-art generic object-detection algorithms to learn to detect birds, each being a member of one of the 38 identified species, in natural scenes. The experiments revealed that computer-aided counting outperformed the manual counting with respect to both accuracy and time. As a real-world application of image-based bird counting, we prepared the spatial bird order distribution and species diversity maps of Turkey by utilizing the geographic information system (GIS) technology. Our results suggested that deep learning can assist humans in bird monitoring activities and increase citizen scientists’ participation in large-scale bird surveys.

[1]  W. Bouten,et al.  Effect of wind, thermal convection, and variation in flight strategies on the daily rhythm and flight paths of migrating raptors at Georgia's Black Sea coast , 2014 .

[2]  Farhad Pourpanah,et al.  Recent advances in deep learning , 2020, International Journal of Machine Learning and Cybernetics.

[3]  M. Virani,et al.  State of the world's raptors: Distributions, threats, and conservation recommendations , 2018, Biological Conservation.

[4]  R. Vishnuvardhan,et al.  Automatic detection of flying bird species using computer vision techniques , 2019, Journal of Physics: Conference Series.

[5]  W. Link,et al.  Observer differences in the North American Breeding Bird Survey , 1994 .

[6]  Jianguo Liu,et al.  The Role of Citizen Science in Conservation under the Telecoupling Framework , 2019, Sustainability.

[7]  R. Primack,et al.  The effects of climate change on tropical birds , 2012 .

[8]  G. Lucia,et al.  Species-Specific Behaviour of Raptors Migrating Across the Turkish Straits in Relation to Weather and Geography , 2017, Ardeola.

[9]  G. Grenzdörffer UAS-based automatic bird count of a common gull colony , 2013 .

[10]  Kohske Takahashi,et al.  Welcome to the Tidyverse , 2019, J. Open Source Softw..

[11]  Ç. Şekercioğlu,et al.  Global raptor research and conservation priorities: Tropical raptors fall prey to knowledge gaps , 2019, Diversity and Distributions.

[12]  Mark K Hinders,et al.  Automatic counting of birds in a bird deterrence field trial , 2019, Ecology and evolution.

[13]  L. Krüger,et al.  Unmanned aerial vehicle (UAV) survey of the Antarctic shag (Leucocarbo bransfieldensis) breeding colony at Harmony Point, Nelson Island, South Shetland Islands , 2020, Polar Biology.

[14]  Patrick Mäder,et al.  Machine learning for image based species identification , 2018, Methods in Ecology and Evolution.

[15]  James D. Nichols,et al.  Monitoring of biological diversity in space and time , 2001 .

[16]  W. Turner Citywide biological monitoring as a tool for ecology and conservation in urban landscapes: the case of the Tucson Bird Count , 2003 .

[17]  Ç. Şekercioğlu Increasing awareness of avian ecological function. , 2006, Trends in ecology & evolution.

[18]  W. Butler,et al.  GIS for mapping waterfowl density and distribution from aerial surveys , 1995 .

[19]  Batumi Raptor Count: autumn raptor migration count data from the Batumi bottleneck, Republic of Georgia , 2019, ZooKeys.

[20]  Lian Pin Koh,et al.  Drones count wildlife more accurately and precisely than humans , 2017, bioRxiv.

[21]  Sang-Yeon Kim,et al.  Application of Deep-Learning Methods to Bird Detection Using Unmanned Aerial Vehicle Imagery , 2019, Sensors.

[22]  Dmitry E. Kislov,et al.  Automatic Windthrow Detection Using Very-High-Resolution Satellite Imagery and Deep Learning , 2020, Remote. Sens..

[23]  Eric Hervet,et al.  Applications for deep learning in ecology , 2019, Methods in Ecology and Evolution.

[24]  David M Marsh,et al.  Current Trends in Plant and Animal Population Monitoring , 2008, Conservation biology : the journal of the Society for Conservation Biology.

[25]  A. Magurran,et al.  Fifteen forms of biodiversity trend in the Anthropocene. , 2015, Trends in ecology & evolution.

[26]  L. S. Sanches Fernandes,et al.  Preservation of wild bird species in northern Portugal - Effects of anthropogenic pressures in wild bird populations (2008-2017). , 2019, The Science of the total environment.

[27]  Richard D. Gregory,et al.  Bird census and survey techniques , 2004 .

[28]  A. Sinclair,et al.  THE MIGRATION OF RAPTORS AND STORKS THROUGH THE NEAR EAST IN AUTUMN , 2008 .

[29]  Dominique Chabot,et al.  Computer‐automated bird detection and counts in high‐resolution aerial images: a review , 2016 .

[30]  K. Böhning‐Gaese,et al.  Long‐term declines of European insectivorous bird populations and potential causes , 2019, Conservation biology : the journal of the Society for Conservation Biology.

[31]  Peter T. Fretwell,et al.  Using super-high resolution satellite imagery to census threatened albatrosses , 2017 .

[32]  Aaron M Ellison,et al.  Observer bias and the detection of low-density populations. , 2009, Ecological applications : a publication of the Ecological Society of America.

[33]  Ç. Şekercioğlu,et al.  Why birds matter: from economic ornithology to ecosystem services , 2015, Journal of Ornithology.

[34]  Paul R. Ehrlich,et al.  Ecosystem consequences of bird declines , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[35]  J. Nichols,et al.  Monitoring for conservation. , 2006, Trends in ecology & evolution.

[36]  A. Merenlender,et al.  Faunal indicator taxa selection for monitoring ecosystem health , 2000 .

[37]  J. Ogden,et al.  The White Ibis and Wood Stork as indicators for restoration of the everglades ecosystem , 2009 .

[38]  Joseph M. Northrup,et al.  Impacts of the Northwest Forest Plan on forest composition and bird populations , 2019, Proceedings of the National Academy of Sciences.

[39]  Mark D. Anderson,et al.  Using object-based analysis of image data to count birds: mapping of Lesser Flamingos at Kamfers Dam, Northern Cape, South Africa , 2011 .

[40]  Geoffrey E. Hinton,et al.  Deep Learning , 2015, Nature.

[41]  The spring migration of raptors in Southern Israel and Sinai , 1980 .

[42]  K. Bildstein,et al.  WITHIN- AND AMONG-YEAR EFFECTS OF COLD FRONTS ON MIGRATING RAPTORS AT HAWK MOUNTAIN, PENNSYLVANIA, 1934-1991 , 1996 .

[43]  M. Zakaria,et al.  Comparison of Species Composition in Three Forest Types: Towards Using Bird as Indicator of Forest Ecosystem Health , 2005 .

[44]  T. Snäll,et al.  Evaluating citizen-based presence data for bird monitoring , 2011 .

[45]  Ben. G. Weinstein A computer vision for animal ecology. , 2018, The Journal of animal ecology.

[46]  Margaret Kosmala,et al.  Automatically identifying, counting, and describing wild animals in camera-trap images with deep learning , 2017, Proceedings of the National Academy of Sciences.

[47]  A GIS-based model of Serengeti grassland bird species , 2007 .

[48]  Graham Rush,et al.  Can drones count gulls? Minimal disturbance and semiautomated image processing with an unmanned aerial vehicle for colony‐nesting seabirds , 2018, Ecology and evolution.

[49]  W. Link,et al.  ESTIMATING POPULATION CHANGE FROM COUNT DATA: APPLICATION TO THE NORTH AMERICAN BREEDING BIRD SURVEY , 1998 .