Multi-stage nuclear transcriptomic insights of morphogenesis and biparental role changes in Lentinula edodes

[1]  Y. Zhang,et al.  Lignocellulose degradation pattern and structural change of the sawdust substrate and enzyme secretion by Lentinula edodes during its production , 2023, Wood Science and Technology.

[2]  Rajnish Kumar,et al.  Influence of Heat Treatment and Solid-State Fermentation on the Lignocellulosic Fractions of Substrates Supporting Lentinula edodes (Berk.) Pegler Cultivation: Implications for Commercial Production , 2023, Fermentation.

[3]  D. Görlich,et al.  Crystal structures of FNIP/FGxxFN motif-containing leucine-rich repeat proteins , 2022, Scientific Reports.

[4]  H. Feng,et al.  α-Ketoglutarate-Mediated DNA Demethylation Sustains T-Acute Lymphoblastic Leukemia upon TCA Cycle Targeting , 2022, Cancers.

[5]  M. Falasca,et al.  Sex-divergent expression of cytochrome P450 and SIRTUIN 1-7 proteins in toxicity evaluation of a benzimidazole-derived epigenetic modulator in mice. , 2022, Toxicology and applied pharmacology.

[6]  Yongping Fu,et al.  Chromosomal genome and population genetic analyses to reveal genetic architecture, breeding history and genes related to cadmium accumulation in Lentinula edodes , 2022, BMC genomics.

[7]  Jianping Xu,et al.  Haplotype-Resolved Genome Analyses Reveal Genetically Distinct Nuclei within a Commercial Cultivar of Lentinula edodes , 2022, Journal of fungi.

[8]  H. Takagi,et al.  Molecular mechanism of ethanol fermentation inhibition via protein tyrosine nitration of pyruvate decarboxylase by reactive nitrogen species in yeast , 2022, Scientific Reports.

[9]  Joshua K. Michener,et al.  Microbial assimilation of lignin-derived aromatic compounds and conversion to value-added products. , 2021, Current opinion in microbiology.

[10]  Xiao-ke Li,et al.  MicroRNA-Mediated Gene Regulation of Secondary Metabolism in Plants , 2021, Critical Reviews in Plant Sciences.

[11]  Fuqiang Yu,et al.  Spatial and temporal disequilibrium of nuclear distribution in heterothallic Morchella importuna , 2021, Journal of Agriculture and Food Research.

[12]  D. Hibbett,et al.  Population genomics provides insights into the genetic basis of adaptive evolution in the mushroom-forming fungus Lentinula edodes , 2021, Journal of advanced research.

[13]  Zhenshan Hou,et al.  Biosynthetic Mechanism of Key Volatile Biomarkers of Harvested Lentinula edodes Triggered by Spore Release. , 2021, Journal of agricultural and food chemistry.

[14]  Hongliang Zhu,et al.  Roles of Plant Glycine-Rich RNA-Binding Proteins in Development and Stress Responses , 2021, International journal of molecular sciences.

[15]  V. Urlacher,et al.  Pecularities and applications of aryl-alcohol oxidases from fungi , 2021, Applied Microbiology and Biotechnology.

[16]  Md. Abu Sadat,et al.  Genome-wide identification of F-box proteins in Macrophomina phaseolina and comparison with other fungus , 2021, Journal of Genetic Engineering and Biotechnology.

[17]  Meagan C. Burnet,et al.  Intracellular pathways for lignin catabolism in white-rot fungi , 2021, Proceedings of the National Academy of Sciences.

[18]  V. Gupta,et al.  Sugar transporters from industrial fungi: Key to improving second-generation ethanol production , 2020 .

[19]  Adriana M. Rico-Ramírez,et al.  Syncytia in Fungi , 2020, Cells.

[20]  G. Beckham,et al.  Characterization of alkylguaiacol-degrading cytochromes P450 for the biocatalytic valorization of lignin , 2020, Proceedings of the National Academy of Sciences.

[21]  M. Komatsu,et al.  Modifications to central carbon metabolism in an engineered Streptomyces host to enhance secondary metabolite production. , 2020, Journal of bioscience and bioengineering.

[22]  D. Kliebenstein,et al.  Plant Secondary Metabolites as Defenses, Regulators, and Primary Metabolites: The Blurred Functional Trichotomy1[OPEN] , 2020, Plant Physiology.

[23]  Q. Xiang,et al.  RNA-seq Profiling Showed Divergent Carbohydrate-Active Enzymes (CAZymes) Expression Patterns in Lentinula edodes at Brown Film Formation Stage Under Blue Light Induction , 2020, Frontiers in Microbiology.

[24]  R. D. de Vries,et al.  Engineering of primary carbon metabolism in filamentous fungi. , 2020, Biotechnology advances.

[25]  T. Gabaldón,et al.  Fungal evolution: cellular, genomic and metabolic complexity , 2020, Biological reviews of the Cambridge Philosophical Society.

[26]  B. Shaw,et al.  Current views on endocytosis in filamentous fungi , 2020, Mycology.

[27]  Yu Li,et al.  Effects of mixed agro-residues (corn crop waste) on lignin-degrading enzyme activities, growth, and quality of Lentinula edodes , 2020, RSC advances.

[28]  Andrew J. Bannister,et al.  Two genomes, one cell: Mitochondrial-nuclear coordination via epigenetic pathways , 2020, Molecular metabolism.

[29]  Shuang Zhao,et al.  Characterization of brown film formed by Lentinula edodes. , 2020, Fungal biology.

[30]  Luiz Pereira Ramos,et al.  CAZymes-based ranking of fungi (CBRF): an interactive web database for identifying fungi with extrinsic plant biomass degrading abilities , 2019, Bioresources and Bioprocessing.

[31]  C. Wittmann,et al.  A field of dreams: Lignin valorization into chemicals, materials, fuels, and health-care products. , 2019, Biotechnology advances.

[32]  J. Enghild,et al.  Sex dictates the constitutive expression of hepatic cytochrome P450 isoforms in Göttingen minipigs. , 2019, Toxicology letters.

[33]  Q. Tan,et al.  Mitogenome types of two Lentinula edodes sensu lato populations in China , 2019, Scientific Reports.

[34]  T. Anderson,et al.  Association of age, sex, and pyrethroid resistance status on survival and cytochrome P450 gene expression in Aedes aegypti (L.). , 2019, Pesticide biochemistry and physiology.

[35]  Funda Atila Compositional changes in lignocellulosic content of some agro-wastes during the production cycle of shiitake mushroom , 2019, Scientia Horticulturae.

[36]  C. P. Hong,et al.  Comparative transcriptome analysis identified candidate genes involved in mycelium browning in Lentinula edodes , 2019, BMC Genomics.

[37]  You-Liang Peng,et al.  A glycine-rich protein MoGrp1 functions as a novel splicing factor to regulate fungal virulence and growth in Magnaporthe oryzae , 2019, Phytopathology Research.

[38]  Y. Sakamoto Influences of environmental factors on fruiting body induction, development and maturation in mushroom-forming fungi , 2018, Fungal Biology Reviews.

[39]  Lily E. Adams,et al.  A Three-Ring Circus: Metabolism of the Three Proteogenic Aromatic Amino Acids and Their Role in the Health of Plants and Animals , 2018, Front. Mol. Biosci..

[40]  E. Paplomatas,et al.  The pyruvate decarboxylase 1 (PDC1) gene: negative regulator of disease resistance for Fusarium oxysporum and Verticillium dahliae , 2018, European journal of plant pathology.

[41]  Wenguang Liu,et al.  De novo transcriptomic analysis during Lentinula edodes fruiting body growth. , 2018, Gene.

[42]  Jennifer H. Wisecaver,et al.  Drivers of genetic diversity in secondary metabolic gene clusters within a fungal species , 2017, bioRxiv.

[43]  M. Reinders,et al.  Nucleus-specific expression in the multinuclear mushroom-forming fungus Agaricus bisporus reveals different nuclear regulatory programs , 2017, Proceedings of the National Academy of Sciences.

[44]  H. Wösten,et al.  Cell Biology of Hyphal Growth , 2017, Microbiology spectrum.

[45]  Kentaroh Yoshida,et al.  Lentinula edodes Genome Survey and Postharvest Transcriptome Analysis , 2017, Applied and Environmental Microbiology.

[46]  M. Fraaije,et al.  Characterization and Crystal Structure of a Robust Cyclohexanone Monooxygenase , 2016, Angewandte Chemie.

[47]  Yang Xiao,et al.  Population genomic analysis uncovers environmental stress-driven selection and adaptation of Lentinula edodes population in China , 2016, Scientific Reports.

[48]  Wei Liu,et al.  Genome Sequence of the Edible Cultivated Mushroom Lentinula edodes (Shiitake) Reveals Insights into Lignocellulose Degradation , 2016, PloS one.

[49]  M. Ehlers,et al.  Specialization of biosynthetic membrane trafficking for neuronal form and function , 2016, Current Opinion in Neurobiology.

[50]  N. Ban,et al.  Structure and Function of the Mitochondrial Ribosome. , 2016, Annual review of biochemistry.

[51]  Yingying Wu,et al.  Transporter and its engineering for secondary metabolites , 2016, Applied Microbiology and Biotechnology.

[52]  Kathryn E. Bushley,et al.  Two genomes are better than one: history, genetics, and biotechnological applications of fungal heterokaryons , 2016, Fungal Biology and Biotechnology.

[53]  C. Schmidt-Dannert Biocatalytic portfolio of Basidiomycota. , 2016, Current opinion in chemical biology.

[54]  Shaowen Quan,et al.  Identification and expression analysis of genes related to calyx persistence in Korla fragrant pear , 2016, BMC Genomics.

[55]  U. Kües From two to many: Multiple mating types in Basidiomycetes , 2015 .

[56]  B. Shaw,et al.  Endocytosis and exocytosis in hyphal growth , 2015 .

[57]  Xiang Zhou,et al.  Ribosomal proteins: functions beyond the ribosome. , 2015, Journal of molecular cell biology.

[58]  A. Kanda,et al.  ATP6AP2/(Pro)renin Receptor Contributes to Glucose Metabolism via Stabilizing the Pyruvate Dehydrogenase E1 β Subunit* , 2015, The Journal of Biological Chemistry.

[59]  E. Sánchez-León,et al.  The Spitzenkörper: a choreographer of fungal growth and morphogenesis. , 2014, Current opinion in microbiology.

[60]  T. Kikuma,et al.  Vesicle trafficking, organelle functions, and unconventional secretion in fungal physiology and pathogenicity. , 2014, Current opinion in microbiology.

[61]  K. Syed,et al.  Comparative Analysis of P450 Signature Motifs EXXR and CXG in the Large and Diverse Kingdom of Fungi: Identification of Evolutionarily Conserved Amino Acid Patterns Characteristic of P450 Family , 2014, PloS one.

[62]  Q. Tan,et al.  Cloning of the Lentinula edodes B mating-type locus and identification of the genetic structure controlling B mating. , 2013, Gene.

[63]  C. Helm,et al.  Expression of manganese peroxidase by Lentinula edodes and Lentinula boryana in solid state and submerged system fermentation. , 2013, Anais da Academia Brasileira de Ciencias.

[64]  Xuehong Zhang,et al.  Transcriptome analysis of candidate genes and signaling pathways associated with light-induced brown film formation in Lentinula edodes , 2013, Applied Microbiology and Biotechnology.

[65]  Somasekhar R. Chinnadayyala,et al.  An overview on alcohol oxidases and their potential applications , 2013, Applied Microbiology and Biotechnology.

[66]  A. Pawlik,et al.  Fungal laccase, manganese peroxidase and lignin peroxidase: gene expression and regulation. , 2013, Enzyme and microbial technology.

[67]  J. Camadro,et al.  Inactivation of mitochondrial aspartate aminotransferase contributes to the respiratory deficit of yeast frataxin-deficient cells. , 2012, The Biochemical journal.

[68]  David W. Reid,et al.  Primary Role for Endoplasmic Reticulum-bound Ribosomes in Cellular Translation Identified by Ribosome Profiling* , 2011, The Journal of Biological Chemistry.

[69]  R. Bennett,et al.  Fungal mating pheromones: choreographing the dating game. , 2011, Fungal genetics and biology : FG & B.

[70]  Q. Zeng,et al.  Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus) , 2010, Proceedings of the National Academy of Sciences.

[71]  R. S. St. Leger,et al.  RNA binding proteins mediate the ability of a fungus to adapt to the cold. , 2010, Environmental microbiology.

[72]  C. Corbin,et al.  Organization of Cytochrome P450 Enzymes Involved in Sex Steroid Synthesis , 2009, The Journal of Biological Chemistry.

[73]  M. Rep,et al.  Lessons from Fungal F-Box Proteins , 2009, Eukaryotic Cell.

[74]  Carmen Sánchez,et al.  Lignocellulosic residues: biodegradation and bioconversion by fungi. , 2009, Biotechnology advances.

[75]  K. Touhara Sexual communication via peptide and protein pheromones. , 2008, Current opinion in pharmacology.

[76]  K. P. Ng,et al.  Gene expression studies of the dikaryotic mycelium and primordium of Lentinula edodes by serial analysis of gene expression. , 2008, Mycological research.

[77]  T. James,et al.  Evolutionary Significance of Imbalanced Nuclear Ratios Within Heterokaryons of the Basidiomycete Fungus Heterobasidion parviporum , 2008, Evolution; international journal of organic evolution.

[78]  R. Peralta,et al.  Purification and some properties of Mn peroxidase from Lentinula edodes , 2006 .

[79]  N. A. White,et al.  Introduction to Fungal Physiology , 2005 .

[80]  F. Lin,et al.  [Influence of B mating-type factor on recovery of nuclear types from dikaryons in Lentinula edodes]. , 2005, Yi chuan xue bao = Acta genetica Sinica.

[81]  J. Bennett,et al.  Fungal secondary metabolism — from biochemistry to genomics , 2005, Nature Reviews Microbiology.

[82]  Y. Tsai,et al.  Structural Characterization of Glucooligosaccharide Oxidase from Acremonium strictum , 2005, Applied and Environmental Microbiology.

[83]  E. Lamani,et al.  Insights into the catalytic mechanism of cofactor-independent phosphoglycerate mutase from X-ray crystallography, simulated dynamics and molecular modeling. , 2003, Journal of molecular biology.

[84]  L. Harvey,et al.  Oxidative Stress in Submerged Cultures of Fungi , 2003, Critical reviews in biotechnology.

[85]  Richard A. Wilson,et al.  Relationship between Secondary Metabolism and Fungal Development , 2002, Microbiology and Molecular Biology Reviews.

[86]  E. Kothe Mating-type genes for basidiomycete strain improvement in mushroom farming , 2001, Applied Microbiology and Biotechnology.

[87]  U. Kües,et al.  Fruiting body production in basidiomycetes , 2000, Applied Microbiology and Biotechnology.

[88]  U. Kües Life History and Developmental Processes in the Basidiomycete Coprinus cinereus , 2000, Microbiology and Molecular Biology Reviews.

[89]  C. Woloshuk,et al.  ord1, an oxidoreductase gene responsible for conversion of O-methylsterigmatocystin to aflatoxin in Aspergillus flavus , 1997, Applied and environmental microbiology.

[90]  M. Fukuda,et al.  Inheritance of mitochondrial DNA in sexual crosses and protoplast cell fusions in Lentinula edodes , 1995, Current Genetics.

[91]  Shu-Ting Chang,et al.  Mushrooms: Cultivation, Nutritional Value, Medicinal Effect, and Environmental Impact , 1988 .

[92]  C. Raper B-MATING-TYPE GENES INFLUENCE SURVIVAL OF NUCLEI SEPARATED FROM HETEROKARYONS OF SCHIZOPHYLLUM , 1985 .

[93]  Q. Tan,et al.  ITS1/5.8S/ITS2, a Good Marker for Initial Classification of Shiitake Culinary-Medicinal Lentinus edodes (Agaricomycetes) Strains in China. , 2018, International Journal of Medicinal Mushrooms.

[94]  N. P. Money Fungal Cell Biology and Development , 2016 .

[95]  A. Kilara,et al.  Ultrastructural Studies of Raw and Processed Tissue of the Major Cultivated Mushroom , Agaricus bisporus , 2015 .

[96]  S. Harris,et al.  Fungal morphogenesis. , 2014, Cold Spring Harbor perspectives in medicine.

[97]  M. Perlin,et al.  Essential letters in the fungal alphabet: ABC and MFS transporters and their roles in survival and pathogenicity. , 2014, Advances in genetics.

[98]  A. Hatakka,et al.  Oxidative fungal enzymes for bioremediation. , 2011 .

[99]  J. Mau,et al.  Nutrient compositions of culinary-medicinal mushroom fruiting bodies and mycelia. , 2011, International journal of medicinal mushrooms.

[100]  D. Kelly,et al.  The CYPome (Cytochrome P450 complement) of Aspergillus nidulans. , 2009, Fungal genetics and biology : FG & B.

[101]  Maria Papagianni,et al.  Fungal morphology and metabolite production in submerged mycelial processes. , 2004, Biotechnology advances.

[102]  H. Kwan,et al.  Identification by RNA fingerprinting of genes differentially expressed during the development of the basidiomycete Lentinula edodes , 2000, Molecular and General Genetics MGG.

[103]  A. Braaksma,et al.  Morphometric analysis of ageing mushroom (Agaricus bisporus) during postharvest development , 1997 .

[104]  A. Microbiology,et al.  Fungal Morphogenesis , 1967, Nature.