Cross-Population Joint Analysis of eQTLs: Fine Mapping and Functional Annotation
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Xiaoquan Wen | Francesca Luca | Roger Pique-Regi | X. Wen | R. Pique-Regi | F. Luca | Francesca Luca | Xiaoquan Wen
[1] Christopher D. Brown,et al. Integrative Modeling of eQTLs and Cis-Regulatory Elements Suggests Mechanisms Underlying Cell Type Specificity of eQTLs , 2012, PLoS genetics.
[2] Matthew Stephens,et al. Dissecting the regulatory architecture of gene expression QTLs , 2012, Genome Biology.
[3] A. Morris,et al. Transethnic Meta-Analysis of Genomewide Association Studies , 2011, Genetic epidemiology.
[4] Joseph K. Pickrell,et al. DNaseI sensitivity QTLs are a major determinant of human expression variation , 2011, Nature.
[5] R. Durbin,et al. Using probabilistic estimation of expression residuals (PEER) to obtain increased power and interpretability of gene expression analyses , 2012, Nature Protocols.
[6] 张静,et al. Banana Ovate family protein MaOFP1 and MADS-box protein MuMADS1 antagonistically regulated banana fruit ripening , 2015 .
[7] Latarsha J. Carithers,et al. The Genotype-Tissue Expression (GTEx) Project. , 2015, Biopreservation and biobanking.
[8] Cynthia A. Kalita,et al. Which genetic variants in DNase I sensitive regions are functional? , 2014, bioRxiv.
[9] Deepayan Sarkar,et al. Detecting differential gene expression with a semiparametric hierarchical mixture method. , 2004, Biostatistics.
[10] Arcadi Navarro,et al. High Trans-ethnic Replicability of GWAS Results Implies Common Causal Variants , 2013, PLoS genetics.
[11] N. Cox,et al. Trait-Associated SNPs Are More Likely to Be eQTLs: Annotation to Enhance Discovery from GWAS , 2010, PLoS genetics.
[12] Bronwen L. Aken,et al. GENCODE: The reference human genome annotation for The ENCODE Project , 2012, Genome research.
[13] Daphne Koller,et al. Polarization of the Effects of Autoimmune and Neurodegenerative Risk Alleles in Leukocytes , 2014, Science.
[14] Liming Liang,et al. A cross-platform analysis of 14,177 expression quantitative trait loci derived from lymphoblastoid cell lines , 2013, Genome research.
[15] David C. Nickle,et al. Lung eQTLs to Help Reveal the Molecular Underpinnings of Asthma , 2012, PLoS genetics.
[16] Chun Jimmie Ye,et al. Effectively Identifying eQTLs from Multiple Tissues by Combining Mixed Model and Meta-analytic Approaches , 2013, PLoS genetics.
[17] Matthew Stephens,et al. Interactions between Glucocorticoid Treatment and Cis-Regulatory Polymorphisms Contribute to Cellular Response Phenotypes , 2011, PLoS genetics.
[18] David A. Drubin,et al. Learning a Prior on Regulatory Potential from eQTL Data , 2009, PLoS genetics.
[19] Pedro G. Ferreira,et al. Transcriptome and genome sequencing uncovers functional variation in humans , 2013, Nature.
[20] P. Visscher,et al. Conditional and joint multiple-SNP analysis of GWAS summary statistics identifies additional variants influencing complex traits , 2012, Nature Genetics.
[21] M. Stephens,et al. High-Resolution Mapping of Expression-QTLs Yields Insight into Human Gene Regulation , 2008, PLoS genetics.
[22] Xiaoquan Wen,et al. Bayesian model selection in complex linear systems, as illustrated in genetic association studies , 2013, Biometrics.
[23] Joseph K. Pickrell,et al. Understanding mechanisms underlying human gene expression variation with RNA sequencing , 2010, Nature.
[24] Andrew D. Johnson,et al. A Genome-Wide Association Meta-Analysis of Circulating Sex Hormone–Binding Globulin Reveals Multiple Loci Implicated in Sex Steroid Hormone Regulation , 2012, PLoS genetics.
[25] R. Andrews,et al. Innate Immune Activity Conditions the Effect of Regulatory Variants upon Monocyte Gene Expression , 2014, Science.
[26] Ellen T. Gelfand,et al. The Genotype-Tissue Expression (GTEx) project , 2013, Nature Genetics.
[27] Howard Y. Chang,et al. Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position , 2013, Nature Methods.
[28] M. Stephens,et al. A Statistical Framework for Joint eQTL Analysis in Multiple Tissues , 2012, PLoS genetics.
[29] William Stafford Noble,et al. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project , 2007, Nature.
[30] Matthew Stephens,et al. BAYESIAN METHODS FOR GENETIC ASSOCIATION ANALYSIS WITH HETEROGENEOUS SUBGROUPS: FROM META-ANALYSES TO GENE-ENVIRONMENT INTERACTIONS. , 2011, The annals of applied statistics.
[31] John C. Marioni,et al. Deciphering the genetic architecture of variation in the immune response to Mycobacterium tuberculosis infection , 2012, Proceedings of the National Academy of Sciences.
[32] Kenny Q. Ye,et al. An integrated map of genetic variation from 1,092 human genomes , 2012, Nature.
[33] Jianqing Fan,et al. Sure independence screening for ultrahigh dimensional feature space , 2006, math/0612857.
[34] M. Stephens,et al. Bayesian variable selection regression for genome-wide association studies and other large-scale problems , 2011, 1110.6019.
[35] Jacob F. Degner,et al. Sequence and Chromatin Accessibility Data Accurate Inference of Transcription Factor Binding from Dna Material Supplemental Open Access , 2022 .
[36] E. Dermitzakis,et al. Candidate Causal Regulatory Effects by Integration of Expression QTLs with Complex Trait Genetic Associations , 2010, PLoS genetics.
[37] William Stafford Noble,et al. Integrative annotation of chromatin elements from ENCODE data , 2012, Nucleic acids research.
[38] Scott A. Rifkin,et al. Revealing the architecture of gene regulation: the promise of eQTL studies. , 2008, Trends in genetics : TIG.
[39] P. Deloukas,et al. Common Regulatory Variation Impacts Gene Expression in a Cell Type–Dependent Manner , 2009, Science.
[40] Xiaoquan Wen. Robust Bayesian FDR Control with Bayes Factors , 2013 .