Simplified Swarm Optimization-Based Function Module Detection in Protein–Protein Interaction Networks
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Xianghan Zheng | Riqing Chen | Shaozhen Ye | Lingting Wu | Riqing Chen | Xianghan Zheng | Shaozhen Ye | Lingting Wu
[1] Marco Dorigo. Ant colony optimization , 2004, Scholarpedia.
[2] Livia Perfetto,et al. MINT, the molecular interaction database: 2012 update , 2011, Nucleic Acids Res..
[3] M. Ashburner,et al. Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.
[4] Gary D. Bader,et al. An automated method for finding molecular complexes in large protein interaction networks , 2003, BMC Bioinformatics.
[5] Aidong Zhang,et al. MAE-FMD: Multi-agent evolutionary method for functional module detection in protein-protein interaction networks , 2014, BMC Bioinformatics.
[6] Damian Szklarczyk,et al. The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored , 2010, Nucleic Acids Res..
[7] Sune Lehmann,et al. Link communities reveal multiscale complexity in networks , 2009, Nature.
[8] Austin G. Meyer,et al. Systematic humanization of yeast genes reveals conserved functions and genetic modularity , 2015, Science.
[9] David Nelson,et al. Bioinformatic Analysis Using Complex Networks and Clustering Proteins Linked with Alzheimer's Disease , 2016, UKCI.
[10] Ivet Bahar,et al. iGNM 2.0: the Gaussian network model database for biomolecular structural dynamics , 2015, Nucleic Acids Res..
[11] Davide Heller,et al. STRING v10: protein–protein interaction networks, integrated over the tree of life , 2014, Nucleic Acids Res..
[12] Hans-Peter Kriegel,et al. A Density-Based Algorithm for Discovering Clusters in Large Spatial Databases with Noise , 1996, KDD.
[13] M E J Newman,et al. Fast algorithm for detecting community structure in networks. , 2003, Physical review. E, Statistical, nonlinear, and soft matter physics.
[14] Jijun Tang,et al. Identification of Protein–Protein Interactions via a Novel Matrix-Based Sequence Representation Model with Amino Acid Contact Information , 2016, International journal of molecular sciences.
[15] Bin Xu,et al. From Function to Interaction: A New Paradigm for Accurately Predicting Protein Complexes Based on Protein-to-Protein Interaction Networks , 2014, IEEE/ACM Transactions on Computational Biology and Bioinformatics.
[16] Mario Albrecht,et al. FunSimMat: a comprehensive functional similarity database , 2007, Nucleic Acids Res..
[17] Ron Shamir,et al. A clustering algorithm based on graph connectivity , 2000, Inf. Process. Lett..
[18] Livia Perfetto,et al. MINT, the molecular interaction database: 2009 update , 2009, Nucleic Acids Res..
[19] Yuan Zhang,et al. A generative model of identifying informative proteins from dynamic PPI networks , 2014, Science China Life Sciences.
[20] Hong Yan,et al. Fast prediction of protein-protein interaction sites based on Extreme Learning Machines , 2014, Neurocomputing.
[21] James Kennedy,et al. Particle swarm optimization , 2002, Proceedings of ICNN'95 - International Conference on Neural Networks.
[22] Xiu-Juan Lei,et al. The Information Flow Clustering Model and Algorithm Based on the Artificial Bee Colony Mechanism of PPI Network: The Information Flow Clustering Model and Algorithm Based on the Artificial Bee Colony Mechanism of PPI Network , 2012 .
[23] Thomas Stützle,et al. Ant Colony Optimization , 2009, EMO.
[24] Rafael C. Jimenez,et al. The MIntAct project—IntAct as a common curation platform for 11 molecular interaction databases , 2013, Nucleic Acids Res..
[25] Dmitrij Frishman,et al. Negatome 2.0: a database of non-interacting proteins derived by literature mining, manual annotation and protein structure analysis , 2013, Nucleic Acids Res..
[26] J. Dorado,et al. Plasmod-PPI: A web-server predicting complex biopolymer targets in plasmodium with entropy measures of protein–protein interactions , 2010 .
[27] Lei Xiu. The Information Flow Clustering Model and Algorithm Based on the Artificial Bee Colony Mechanism of PPI Network , 2012 .
[28] Tatsuya Akutsu,et al. Prediction of heterotrimeric protein complexes by two-phase learning using neighboring kernels , 2014, BMC Bioinformatics.
[29] Md. Islam,et al. Comparative analysis of differential network modularity in tissue specific normal and cancer protein interaction networks , 2013, Journal of Clinical Bioinformatics.
[30] Roded Sharan,et al. Revealing modularity and organization in the yeast molecular network by integrated analysis of highly heterogeneous genomewide data. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[31] Aidong Zhang,et al. Improved Ant Colony Optimization for Detecting Functional Modules in Protein-Protein Interaction Networks , 2012, ICICA.
[32] D. Karaboga,et al. On the performance of artificial bee colony (ABC) algorithm , 2008, Appl. Soft Comput..
[33] Jiangning Song,et al. Identifying Coevolution Between Amino Acid Residues in Protein Families: Advances in the Improvement and Evaluation of Correlated Mutation Algorithms , 2013 .
[34] J. Dorado,et al. Trypano-PPI: a web server for prediction of unique targets in trypanosome proteome by using electrostatic parameters of protein-protein interactions. , 2010, Journal of proteome research.
[35] Kengo Kinoshita,et al. SAHG, a comprehensive database of predicted structures of all human proteins , 2010, Nucleic Acids Res..
[36] Aidong Zhang,et al. Ant Colony Optimization with Multi-Agent Evolution for Detecting Functional Modules in Protein-Protein Interaction Networks , 2012, ICICA.
[37] angesichts der Corona-Pandemie,et al. UPDATE , 1973, The Lancet.