Emergent Functional Properties of Neuronal Networks with Controlled Topology

The interplay between anatomical connectivity and dynamics in neural networks plays a key role in the functional properties of the brain and in the associated connectivity changes induced by neural diseases. However, a detailed experimental investigation of this interplay at both cellular and population scales in the living brain is limited by accessibility. Alternatively, to investigate the basic operational principles with morphological, electrophysiological and computational methods, the activity emerging from large in vitro networks of primary neurons organized with imposed topologies can be studied. Here, we validated the use of a new bio-printing approach, which effectively maintains the topology of hippocampal cultures in vitro and investigated, by patch-clamp and MEA electrophysiology, the emerging functional properties of these grid-confined networks. In spite of differences in the organization of physical connectivity, our bio-patterned grid networks retained the key properties of synaptic transmission, short-term plasticity and overall network activity with respect to random networks. Interestingly, the imposed grid topology resulted in a reinforcement of functional connections along orthogonal directions, shorter connectivity links and a greatly increased spiking probability in response to focal stimulation. These results clearly demonstrate that reliable functional studies can nowadays be performed on large neuronal networks in the presence of sustained changes in the physical network connectivity.

[1]  Eric Jones,et al.  SciPy: Open Source Scientific Tools for Python , 2001 .

[2]  Sonja Grün,et al.  Analysis of Parallel Spike Trains , 2010 .

[3]  Luca Berdondini,et al.  Experimental Investigation on Spontaneously Active Hippocampal Cultures Recorded by Means of High-Density MEAs: Analysis of the Spatial Resolution Effects , 2010, Front. Neuroeng..

[4]  G. Banker,et al.  Culturing nerve cells , 1998 .

[5]  S. Rombouts,et al.  Loss of ‘Small-World’ Networks in Alzheimer's Disease: Graph Analysis of fMRI Resting-State Functional Connectivity , 2010, PloS one.

[6]  J. Lichtman,et al.  Synapse Elimination and Indelible Memory , 2000, Neuron.

[7]  Katsunori Kitano,et al.  Variability v.s. synchronicity of neuronal activity in local cortical network models with different wiring topologies , 2007, Journal of Computational Neuroscience.

[8]  A. Ferreira,et al.  The synapsins: beyond the regulation of neurotransmitter release , 2002, Cellular and Molecular Life Sciences CMLS.

[9]  Andreas Offenhäusser,et al.  Synaptic plasticity in micropatterned neuronal networks. , 2005, Biomaterials.

[10]  C. Stevens,et al.  Excitatory and inhibitory autaptic currents in isolated hippocampal neurons maintained in cell culture. , 1991, Proceedings of the National Academy of Sciences of the United States of America.

[11]  Sergio Martinoia,et al.  Evaluation of the Performance of Information Theory-Based Methods and Cross-Correlation to Estimate the Functional Connectivity in Cortical Networks , 2009, PloS one.

[12]  Carl W. Cotman,et al.  Microlithographic determination of axonal/dendritic polarity in cultured hippocampal neurons , 1998, Journal of Neuroscience Methods.

[13]  Luca Berdondini,et al.  A microelectrode array (MEA) integrated with clustering structures for investigating in vitro neurodynamics in confined interconnected sub-populations of neurons , 2006 .

[14]  Guifu Ding,et al.  Microfabricated Quill-Type Surface Patterning Tools for the Creation of Biological Micro/Nano Arrays , 2004, Biomedical microdevices.

[15]  Bruce C Wheeler,et al.  A modified microstamping technique enhances polylysine transfer and neuronal cell patterning. , 2003, Biomaterials.

[16]  Jurgen Kurths,et al.  Synchronization in complex networks , 2008, 0805.2976.

[17]  Gabriel A. Silva,et al.  A Framework for Simulating and Estimating the State and Functional Topology of Complex Dynamic Geometric Networks , 2009, Neural Computation.

[18]  Ralph Linsker,et al.  Synchronous neural activity in scale-free network models versus random network models. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[19]  O. Sporns,et al.  Identification and Classification of Hubs in Brain Networks , 2007, PloS one.

[20]  Kevin C. Daly,et al.  Detailed Characterization of Local Field Potential Oscillations and Their Relationship to Spike Timing in the Antennal Lobe of the Moth Manduca sexta , 2011, Front. Neuroeng..

[21]  Michel A. Picardo,et al.  GABAergic Hub Neurons Orchestrate Synchrony in Developing Hippocampal Networks , 2009, Science.

[22]  Richard L. Huganir,et al.  Regulation of morphological postsynaptic silent synapses in developing hippocampal neurons , 1999, Nature Neuroscience.

[23]  Xiang Zhang,et al.  Axon Initiation and Growth Cone Turning on Bound Protein Gradients , 2009, The Journal of Neuroscience.

[24]  Marc-Thorsten Hütt,et al.  Organization of Excitable Dynamics in Hierarchical Biological Networks , 2008, PLoS Comput. Biol..

[25]  Duncan J. Watts,et al.  Collective dynamics of ‘small-world’ networks , 1998, Nature.

[26]  C. Cotman,et al.  A microfluidic culture platform for CNS axonal injury, regeneration and transport , 2005, Nature Methods.

[27]  John F. Wesseling,et al.  Limit on the Role of Activity in Controlling the Release-Ready Supply of Synaptic Vesicles , 2002, The Journal of Neuroscience.

[28]  Yoonkey Nam,et al.  Epoxy-silane linking of biomolecules is simple and effective for patterning neuronal cultures. , 2005, Biosensors & bioelectronics.

[29]  Paolo Massobrio,et al.  A novel algorithm for precise identification of spikes in extracellularly recorded neuronal signals , 2009, Journal of Neuroscience Methods.

[30]  Roberto Cingolani,et al.  Effects of cell culture media on the dynamic formation of protein-nanoparticle complexes and influence on the cellular response. , 2010, ACS nano.

[31]  G J Brewer,et al.  Compliance of hippocampal neurons to patterned substrate networks , 1991, Journal of neuroscience research.

[32]  Sung June Kim,et al.  Low-density neuronal networks cultured using patterned poly-l-lysine on microelectrode arrays , 2007, Journal of Neuroscience Methods.

[33]  Edwin R. Chapman,et al.  Autapses and Networks of Hippocampal Neurons Exhibit Distinct Synaptic Transmission Phenotypes in the Absence of Synaptotagmin I , 2009, The Journal of Neuroscience.

[34]  R. Douglas,et al.  A Quantitative Map of the Circuit of Cat Primary Visual Cortex , 2004, The Journal of Neuroscience.

[35]  T. Livache,et al.  Individual blood-cell capture and 2D organization on microarrays. , 2009, Small.

[36]  Wolfgang Knoll,et al.  Triangular neuronal networks on microelectrode arrays: an approach to improve the properties of low-density networks for extracellular recording , 2009, Biomedical microdevices.

[37]  F. Benfenati,et al.  Lack of Synapsin I Reduces the Readily Releasable Pool of Synaptic Vesicles at Central Inhibitory Synapses , 2007, The Journal of Neuroscience.

[38]  D Kleinfeld,et al.  Controlled outgrowth of dissociated neurons on patterned substrates , 1988, The Journal of neuroscience : the official journal of the Society for Neuroscience.

[39]  O. Sporns,et al.  Complex brain networks: graph theoretical analysis of structural and functional systems , 2009, Nature Reviews Neuroscience.

[40]  Luca Berdondini,et al.  Active pixel sensor array for high spatio-temporal resolution electrophysiological recordings from single cell to large scale neuronal networks. , 2009, Lab on a chip.

[41]  Kevan A. C. Martin,et al.  Topology and dynamics of the canonical circuit of cat V1 , 2009, Neural Networks.

[42]  J M Calvert,et al.  Deep UV photochemistry of chemisorbed monolayers: patterned coplanar molecular assemblies. , 1991, Science.

[43]  J. Ludden,et al.  Principles and Practice , 1998, Community-based Learning and Social Movements.

[44]  C. Rueden,et al.  Metadata matters: access to image data in the real world , 2010, The Journal of cell biology.

[45]  J. White,et al.  Epilepsy in Small-World Networks , 2004, The Journal of Neuroscience.

[46]  Robert R. Sokal,et al.  The Principles and Practice of Statistics in Biological Research. , 1982 .

[47]  L. L. Bologna,et al.  Low-frequency stimulation enhances burst activity in cortical cultures during development , 2010, Neuroscience.

[48]  Eshel Ben-Jacob,et al.  Innate Synchronous Oscillations in Freely-Organized Small Neuronal Circuits , 2010, PloS one.

[49]  Angela Tooker,et al.  Caged neuron MEA: A system for long-term investigation of cultured neural network connectivity , 2008, Journal of Neuroscience Methods.

[50]  Lee E Miller,et al.  Inferring functional connections between neurons , 2008, Current Opinion in Neurobiology.

[51]  E. Neher,et al.  Vesicle pools and short-term synaptic depression: lessons from a large synapse , 2002, Trends in Neurosciences.

[52]  Bruce C. Wheeler,et al.  Designing Neural Networks in Culture , 2010, Proceedings of the IEEE.

[53]  Hiroyuki Fujita,et al.  Constraining the connectivity of neuronal networks cultured on microelectrode arrays with microfluidic techniques: a step towards neuron-based functional chips. , 2006, Biosensors & bioelectronics.

[54]  Menahem Segal,et al.  Neuronal density determines network connectivity and spontaneous activity in cultured hippocampus. , 2010, Journal of neurophysiology.

[55]  G. Buzsáki,et al.  Interneuron Diversity series: Circuit complexity and axon wiring economy of cortical interneurons , 2004, Trends in Neurosciences.

[56]  Alessandro Vato,et al.  Dissociated cortical networks show spontaneously correlated activity patterns during in vitro development , 2006, Brain Research.

[57]  G. Whitesides,et al.  Patterned deposition of cells and proteins onto surfaces by using three-dimensional microfluidic systems. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[58]  Ofer Feinerman,et al.  Reliable neuronal logic devices from patterned hippocampal cultures , 2008 .

[59]  Henry Markram,et al.  Synaptic pathways in neural microcircuits , 2005, Trends in Neurosciences.

[60]  Kenji Yasuda,et al.  Detection of tetanus-induced effects in linearly lined-up micropatterned neuronal networks: application of a multi-electrode array chip combined with agarose microstructures. , 2007, Biochemical and biophysical research communications.

[61]  A Mallart,et al.  An analysis of facilitation of transmitter release at the neuromuscular junction of the frog , 1967, The Journal of physiology.

[62]  E. Carbone,et al.  Brain-Derived Neurotrophic Factor Enhances GABA Release Probability and Nonuniform Distribution of N- and P/Q-Type Channels on Release Sites of Hippocampal Inhibitory Synapses , 2005, The Journal of Neuroscience.

[63]  Christian Rosenmund,et al.  Definition of the Readily Releasable Pool of Vesicles at Hippocampal Synapses , 1996, Neuron.

[64]  Vincent Torre,et al.  Statistical properties of information processing in neuronal networks , 2005, The European journal of neuroscience.