A proteomic view of the host–pathogen interaction: The host perspective

The host–pathogen interaction represents a complex and dynamic biological system. The outcome of this interaction is dependent on the microbial pathogen properties to establish infection and the ability of the host to control infection. Although bacterial pathogens have evolved a variety of strategies to subvert host defense functions, several general mechanisms have been shown to be shared among these pathogens. As a result, host effectors that are critical for pathogen entry, survival and replication inside the host cells have become a new paradigm for antimicrobial targeting. This review focuses on the potential utility of a proteomics approach in defining the host–pathogen interaction from the host's perspective.

[1]  Chanchal Kumar,et al.  Quantitative analysis of kinase-proximal signaling in lipopolysaccharide-induced innate immune response. , 2010, Journal of proteome research.

[2]  Jun Yao,et al.  Subcellular quantitative proteomics reveals multiple pathway cross-talk that coordinates specific signaling and transcriptional regulation for the early host response to LPS. , 2010, Journal of proteome research.

[3]  Carla M. P. Cardoso,et al.  Rab10 Regulates Phagosome Maturation and Its Overexpression Rescues Mycobacterium‐Containing Phagosomes Maturation , 2010, Traffic.

[4]  D. Raoult,et al.  High Throughput Sequencing and Proteomics to Identify Immunogenic Proteins of a New Pathogen: The Dirty Genome Approach , 2009, PloS one.

[5]  L. Foster,et al.  Sequestosome-1/p62 Is the Key Intracellular Target of Innate Defense Regulator Peptide* , 2009, The Journal of Biological Chemistry.

[6]  B. Gibson,et al.  The Mycobacterium bovis Bacille Calmette-Guérin Phagosome Proteome* , 2009, Molecular & Cellular Proteomics.

[7]  W. Nacken,et al.  Neutrophil Extracellular Traps Contain Calprotectin, a Cytosolic Protein Complex Involved in Host Defense against Candida albicans , 2009, PLoS pathogens.

[8]  G. Kéri,et al.  Quantitative Phosphokinome Analysis of the Met Pathway Activated by the Invasin Internalin B from Listeria monocytogenes* , 2009, Molecular & Cellular Proteomics.

[9]  Matthias Mann,et al.  Bioinformatics analysis of mass spectrometry‐based proteomics data sets , 2009, FEBS letters.

[10]  R. Medzhitov,et al.  Targeting of immune signalling networks by bacterial pathogens , 2009, Nature Cell Biology.

[11]  Matthias Mann,et al.  Host cell interactome of tyrosine-phosphorylated bacterial proteins. , 2009, Cell host & microbe.

[12]  George M. Hilliard,et al.  Enterotoxigenic Escherichia coli EtpA mediates adhesion between flagella and host cells , 2008, Nature.

[13]  Xian Chen,et al.  Quantitative proteomic analysis of LPS‐induced differential immune response associated with TLR4 Polymorphisms by multiplex amino acid coded mass tagging , 2008, Proteomics.

[14]  S. Cordwell,et al.  Immunoproteomics To Examine Cystic Fibrosis Host Interactions with Extracellular Pseudomonas aeruginosa Proteins , 2008, Infection and Immunity.

[15]  F. Brombacher,et al.  Host-Directed Drug Targeting of Factors Hijacked by Pathogens , 2008, Science Signaling.

[16]  Amita Jain,et al.  Extensively drug-resistant tuberculosis: current challenges and threats. , 2008, FEMS immunology and medical microbiology.

[17]  Kate E. Jones,et al.  Global trends in emerging infectious diseases , 2008, Nature.

[18]  R. Brunham,et al.  Immunoproteomic Discovery of Novel T Cell Antigens from the Obligate Intracellular Pathogen Chlamydia1 , 2008, The Journal of Immunology.

[19]  Matthew D. Dyer,et al.  The Landscape of Human Proteins Interacting with Viruses and Other Pathogens , 2008, PLoS pathogens.

[20]  Robert E. Kearney,et al.  Quantitative Proteomics Analysis of the Secretory Pathway , 2006, Cell.

[21]  R. Hancock,et al.  Antimicrobial and host-defense peptides as new anti-infective therapeutic strategies , 2006, Nature Biotechnology.

[22]  M. Mann,et al.  Global, In Vivo, and Site-Specific Phosphorylation Dynamics in Signaling Networks , 2006, Cell.

[23]  A. Whetton,et al.  Relative quantification in proteomics: new approaches for biochemistry. , 2006, Trends in biochemical sciences.

[24]  B. Finlay,et al.  Anti-Immunology: Evasion of the Host Immune System by Bacterial and Viral Pathogens , 2006, Cell.

[25]  T. Meyer,et al.  Gene expression and protein profiling of AGS gastric epithelial cells upon infection with Helicobacter pylori , 2005, Proteomics.

[26]  Richard A. Young,et al.  Insights into host responses against pathogens from transcriptional profiling , 2005, Nature Reviews Microbiology.

[27]  Steven P Gygi,et al.  The absolute quantification strategy: a general procedure for the quantification of proteins and post-translational modifications. , 2005, Methods.

[28]  L. Huber,et al.  Zooming in: Fractionation strategies in proteomics , 2004, Proteomics.

[29]  David R Goodlett,et al.  Proteomic Analysis of the Intestinal Epithelial Cell Response to Enteropathogenic Escherichia coli* , 2004, Journal of Biological Chemistry.

[30]  Pascale Cossart,et al.  Bacterial Invasion: The Paradigms of Enteroinvasive Pathogens , 2004, Science.

[31]  Lennart Martens,et al.  Reversible labeling of cysteine‐containing peptides allows their specific chromatographic isolation for non‐gel proteome studies , 2004, Proteomics.

[32]  Alexander W Bell,et al.  Tandem MS analysis of brain clathrin-coated vesicles reveals their critical involvement in synaptic vesicle recycling. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[33]  P. Cossart Bacterial invasion: a new strategy to dominate cytoskeleton plasticity. , 2004, Developmental cell.

[34]  Ruedi Aebersold,et al.  Chemical probes and tandem mass spectrometry: a strategy for the quantitative analysis of proteomes and subproteomes. , 2004, Current opinion in chemical biology.

[35]  Andrew Emili,et al.  Going global: protein expression profiling using shotgun mass spectrometry. , 2003, Current opinion in molecular therapeutics.

[36]  R. Aebersold,et al.  Mass spectrometry-based proteomics , 2003, Nature.

[37]  M. Mann,et al.  Proteomic analysis of post-translational modifications , 2003, Nature Biotechnology.

[38]  Matthias Mann,et al.  Mass spectrometric-based approaches in quantitative proteomics. , 2003, Methods.

[39]  P. Schultz,et al.  Profiling of tyrosine phosphorylation pathways in human cells using mass spectrometry , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[40]  J. Yates,et al.  Shotgun Proteomics and Biomarker Discovery , 2002, Disease markers.

[41]  R. Modlin Mammalian toll-like receptors. , 2002, Annals of allergy, asthma & immunology : official publication of the American College of Allergy, Asthma, & Immunology.

[42]  T. Triche,et al.  Infectomics: genomics and proteomics of microbial infections , 2002, Functional & Integrative Genomics.

[43]  J. Yates,et al.  Direct analysis of protein complexes using mass spectrometry , 1999, Nature Biotechnology.

[44]  F. Cross,et al.  Accurate quantitation of protein expression and site-specific phosphorylation. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[45]  M. Kuhn,et al.  The microtubule depolymerizing drugs nocodazole and colchicine inhibit the uptake of Listeria monocytogenes by P388D1 macrophages. , 1998, FEMS microbiology letters.

[46]  A. McCormack,et al.  Direct Analysis of Protein Mixtures by Tandem Mass Spectrometry , 1997, Journal of protein chemistry.

[47]  E. Ikonen,et al.  Functional rafts in cell membranes , 1997, Nature.

[48]  J. Yates,et al.  Direct analysis and identification of proteins in mixtures by LC/MS/MS and database searching at the low-femtomole level. , 1997, Analytical chemistry.

[49]  P. O’Farrell High resolution two-dimensional electrophoresis of proteins. , 1975, The Journal of biological chemistry.

[50]  Jay D Keasling,et al.  Quantitative proteomic profiling of host-pathogen interactions: the macrophage response to Mycobacterium tuberculosis lipids. , 2009, Journal of proteome research.

[51]  K. Tomer,et al.  Quantitative Proteomics Analysis of Macrophage Rafts Reveals Compartmentalized Activation of the Proteasome and of Proteasome-mediated ERK Activation in Response to Lipopolysaccharide , 2008 .

[52]  T. Veenstra Proteome analysis of posttranslational modifications. , 2003, Advances in protein chemistry.

[53]  B. Thiede,et al.  Protein identification from 2-DE gels by MALDI mass spectrometry. , 1997, Mass spectrometry reviews.