Fast and simple monte carlo algorithm for side chain optimization in proteins: Application to model building by homology
暂无分享,去创建一个
[1] N. Metropolis,et al. Equation of State Calculations by Fast Computing Machines , 1953, Resonance.
[2] G J Williams,et al. The Protein Data Bank: a computer-based archival file for macromolecular structures. , 1977, Journal of molecular biology.
[3] W. Kabsch,et al. Dictionary of protein secondary structure: Pattern recognition of hydrogen‐bonded and geometrical features , 1983, Biopolymers.
[4] C. D. Gelatt,et al. Optimization by Simulated Annealing , 1983, Science.
[5] L M Amzel,et al. Calculating three‐dimensional changes in protein structure due to amino‐acid substitutions: The variable region of immunoglobulins , 1986, Proteins.
[6] T. A. Jones,et al. Using known substructures in protein model building and crystallography. , 1986, The EMBO journal.
[7] J. Moult,et al. An algorithm for determining the conformation of polypeptide segments in proteins by systematic search , 1986, Proteins.
[8] A. Lesk,et al. The relation between the divergence of sequence and structure in proteins. , 1986, The EMBO journal.
[9] William R. Taylor,et al. A structural model for the retroviral proteases , 1987, Nature.
[10] J. Ponder,et al. Tertiary templates for proteins. Use of packing criteria in the enumeration of allowed sequences for different structural classes. , 1987, Journal of molecular biology.
[11] M. Karplus,et al. Prediction of the folding of short polypeptide segments by uniform conformational sampling , 1987, Biopolymers.
[12] C Sander,et al. Polarity as a criterion in protein design. , 1989, Protein engineering.
[13] M Karplus,et al. Construction of side-chains in homology modelling. Application to the C-terminal lobe of rhizopuspepsin. , 1989, Journal of molecular biology.
[14] M. Karplus,et al. Conformational sampling using high‐temperature molecular dynamics , 1990, Biopolymers.
[15] G Vriend,et al. WHAT IF: a molecular modeling and drug design program. , 1990, Journal of molecular graphics.
[16] R M Stroud,et al. Prediction of homologous protein structures based on conformational searches and energetics , 1990, Proteins.
[17] Paul E. Correa,et al. The building of protein structures form α‐carbon coordinates , 1990 .
[18] C. Sander,et al. Database algorithm for generating protein backbone and side-chain co-ordinates from a C alpha trace application to model building and detection of co-ordinate errors. , 1991, Journal of molecular biology.
[19] C. Sander,et al. Database of homology‐derived protein structures and the structural meaning of sequence alignment , 1991, Proteins.
[20] A Valencia,et al. The ras protein family: evolutionary tree and role of conserved amino acids. , 1991, Biochemistry.
[21] R. Lavery,et al. A new approach to the rapid determination of protein side chain conformations. , 1991, Journal of biomolecular structure & dynamics.
[22] Timothy F. Havel,et al. A new method for building protein conformations from sequence alignments with homologues of known structure. , 1991, Journal of molecular biology.