Osmotic pressure effects identify dehydration upon cytochrome c - cytochrome c oxidase complex formation contributing to a specific electron pathway formation.
暂无分享,去创建一个
S. Yoshikawa | K. Shinzawa-Itoh | T. Uchida | K. Ishimori | K. Yoshizawa | Wataru Sato | Seiji Hitaoka
[1] L. Palese. Oxygen-oxygen distances in protein-bound crystallographic water suggest the presence of protonated clusters. , 2019, Biochimica et biophysica acta. General subjects.
[2] S. Ferguson-Miller,et al. Definition of the Interaction Domain and Electron Transfer Route between Cytochrome c and Cytochrome Oxidase. , 2019, Biochemistry.
[3] S. Yoshikawa,et al. Complex structure of cytochrome c–cytochrome c oxidase reveals a novel protein–protein interaction mode , 2016, The EMBO journal.
[4] S. Yoshikawa,et al. Energetic Mechanism of Cytochrome c-Cytochrome c Oxidase Electron Transfer Complex Formation under Turnover Conditions Revealed by Mutational Effects and Docking Simulation* , 2016, The Journal of Biological Chemistry.
[5] S. Yoshikawa,et al. Reaction mechanism of cytochrome c oxidase. , 2015, Chemical reviews.
[6] Michael T. Wilson,et al. The hydrogen-peroxide-induced radical behaviour in human cytochrome c-phospholipid complexes: implications for the enhanced pro-apoptotic activity of the G41S mutant. , 2013, The Biochemical journal.
[7] H. Chuman,et al. Revisiting the Hansch–Fujita approach and development of a fundamental QSAR , 2013 .
[8] Gerhard König,et al. Absolute hydration free energies of blocked amino acids: implications for protein solvation and stability. , 2013, Biophysical journal.
[9] S. Yoshikawa,et al. NMR basis for interprotein electron transfer gating between cytochrome c and cytochrome c oxidase , 2011, Proceedings of the National Academy of Sciences.
[10] Tingjun Hou,et al. Assessing the Performance of the MM/PBSA and MM/GBSA Methods. 1. The Accuracy of Binding Free Energy Calculations Based on Molecular Dynamics Simulations , 2011, J. Chem. Inf. Model..
[11] Kwang Soo Kim,et al. Prediction of reorganization free energies for biological electron transfer: a comparative study of Ru-modified cytochromes and a 4-helix bundle protein. , 2010, Journal of the American Chemical Society.
[12] T. Uchida,et al. Redox-controlled backbone dynamics of human cytochrome c revealed by 15N NMR relaxation measurements. , 2010, Biochemical and biophysical research communications.
[13] Jan Rezác,et al. Surface residues dynamically organize water bridges to enhance electron transfer between proteins , 2010, Proceedings of the National Academy of Sciences.
[14] Martin Zacharias,et al. Prediction of protein-protein interaction sites using electrostatic desolvation profiles. , 2010, Biophysical journal.
[15] Tsuyoshi Inoue,et al. Structural basis of inter-protein electron transfer for nitrite reduction in denitrification , 2009, Nature.
[16] Huan‐Xiang Zhou,et al. Fundamental aspects of protein-protein association kinetics. , 2009, Chemical reviews.
[17] Takashi Sugimura,et al. Structures and physiological roles of 13 integral lipids of bovine heart cytochrome c oxidase , 2007, The EMBO journal.
[18] Harel Weinstein,et al. Thermodynamic basis for promiscuity and selectivity in protein-protein interactions: PDZ domains, a case study. , 2006, Journal of the American Chemical Society.
[19] K. Ishimori,et al. Dehydration in the folding of reduced cytochrome c revealed by the electron-transfer-triggered folding under high pressure. , 2006, Journal of the American Chemical Society.
[20] D. W. Bolen,et al. Predicting the energetics of osmolyte-induced protein folding/unfolding. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[21] Gideon Schreiber,et al. Separating the contribution of translational and rotational diffusion to protein association. , 2005, Journal of the American Chemical Society.
[22] A. Puustinen,et al. The catalytic cycle of cytochrome c oxidase is not the sum of its two halves. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[23] David S. Wishart,et al. VADAR: a web server for quantitative evaluation of protein structure quality , 2003, Nucleic Acids Res..
[24] Hsien-Chang Chang,et al. Expression and Characterization of Recombinant Human Cytochrome c in E. coli , 2002, Journal of bioenergetics and biomembranes.
[25] I. Baskakov,et al. The osmophobic effect: natural selection of a thermodynamic force in protein folding. , 2001, Journal of molecular biology.
[26] I. Morishima,et al. The Role of Water Molecules in the Association of Cytochrome P450cam with Putidaredoxin , 2001, The Journal of Biological Chemistry.
[27] S. Ferguson-Miller,et al. Definition of the Interaction Domain for Cytochrome con Cytochrome c Oxidase , 1999, The Journal of Biological Chemistry.
[28] V. Bloomfield,et al. Osmotic pressure effects on EcoRV cleavage and binding. , 1999, Journal of biomolecular structure & dynamics.
[29] M. von Walter,et al. The structural and functional role of lysine residues in the binding domain of cytochrome c in the electron transfer to cytochrome c oxidase. , 1999, European journal of biochemistry.
[30] M. Saraste. Oxidative phosphorylation at the fin de siècle. , 1999, Science.
[31] B. Bowler,et al. Electron Transfer through the Hydrogen-Bonded Interface of a β-Turn-Forming Depsipeptide , 1998 .
[32] G. H. Hoa,et al. Thermodynamic volume cycles for electron transfer in the cytochrome c oxidase and for the binding of cytochrome c to cytochrome c oxidase. , 1998, Biophysical journal.
[33] T. Tomizaki,et al. Redox-coupled crystal structural changes in bovine heart cytochrome c oxidase. , 1998, Science.
[34] Y. Fukunishi,et al. Hydrophobic Hydration Analysis on Amino Acid Solutions by the Microwave Dielectric Method , 1997 .
[35] S. Papa,et al. Factors affecting the H+/e- stoichiometry in mitochondrial cytochrome c oxidase: influence of the rate of electron flow and transmembrane delta pH. , 1996, Biochemistry.
[36] M. Saraste,et al. Electron transfer between cytochrome c and the isolated CuA domain: identification of substrate-binding residues in cytochrome c oxidase. , 1995, Biochemistry.
[37] H. Bosshard,et al. Thermodynamics of ferredoxin binding to ferredoxin:NADP+ reductase and the role of water at the complex interface. , 1994, Biochemistry.
[38] G. H. Hoa,et al. Responses of two protein-protein complexes to solvent stress: does water play a role at the interface? , 1993, Biophysical journal.
[39] P. Butko,et al. Measured change in protein solvation with substrate binding and turnover. , 1993, Biochemistry.
[40] H. Bosshard,et al. Oxidation of cytochrome c by cytochrome c oxidase: spectroscopic binding studies and steady-state kinetics support a conformational transition mechanism. , 1989, Biochemistry.
[41] K. Gekko,et al. Compressibility of globular proteins in water at 25.degree.C , 1979 .
[42] Martin Karplus,et al. SOLVATION. A MOLECULAR DYNAMICS STUDY OF A DIPEPTIDE IN WATER. , 1979 .
[43] E. Margoliash,et al. Definition of cytochrome c binding domains by chemical modification. III. Kinetics of reaction of carboxydinitrophenyl cytochromes c with cytochrome c oxidase. , 1978, The Journal of biological chemistry.
[44] C. Chothia,et al. Principles of protein–protein recognition , 1975, Nature.
[45] T. Yonetani,et al. STUDIES ON CYTOCHROME OXIDASE. VI. KINETICS OF THE AEROBIC OXIDATION OF FERROCYTOCHROME C BY CYTOCHROME OXIDASE. , 1965, The Journal of biological chemistry.
[46] K. Minnaert. The kinetics of cytochrome c oxidase. I. The system: cytochrome c-cytochrome oxidase-oxygen. , 1961, Biochimica et biophysica acta.
[47] T. Yonetani,et al. Studies on Cytochrome Oxidase , 2003 .
[48] D. Erie,et al. Interpreting the effects of small uncharged solutes on protein-folding equilibria. , 2001, Annual review of biophysics and biomolecular structure.
[49] I. Luque,et al. Structure-based prediction of binding affinities and molecular design of peptide ligands. , 1998, Methods in enzymology.
[50] Y. Fukunishi,et al. Coupling of protein surface hydrophobicity change to ATP hydrolysis by myosin motor domain. , 1997, Biophysical journal.
[51] P. Privalov,et al. Energetics of protein structure. , 1995, Advances in protein chemistry.
[52] S. N. Timasheff,et al. The control of protein stability and association by weak interactions with water: how do solvents affect these processes? , 1993, Annual review of biophysics and biomolecular structure.
[53] G. Moore,et al. Cytochromes c , 1987, Springer Series in Molecular Biology.
[54] E. Margoliash,et al. Single catalytic site model for the oxidation of ferrocytochrome c by mitochondrial cytochrome c oxidase. , 1984, Proceedings of the National Academy of Sciences of the United States of America.
[55] R. C. Weast. CRC Handbook of Chemistry and Physics , 1973 .