Embedding Data within Knowledge Spaces

The promise of e-Science will only be realized when data is discoverable, accessible, and comprehensible within distributed teams, across disciplines, and over the long-term--without reliance on out-of-band (non-digital) means. We have developed the open-source Tupelo semantic content management framework and are employing it to manage a wide range of e-Science entities (including data, documents, workflows, people, and projects) and a broad range of metadata (including provenance, social networks, geospatial relationships, temporal relations, and domain descriptions). Tupelo couples the use of global identifiers and resource description framework (RDF) statements with an aggregatable content repository model to provide a unified space for securely managing distributed heterogeneous content and relationships.

[1]  Jesse Feiler How to do everything with web 2.0 mashups / Jesse Feiler , 2007 .

[2]  Edward A. Lee,et al.  CONCURRENCY AND COMPUTATION: PRACTICE AND EXPERIENCE Concurrency Computat.: Pract. Exper. 2000; 00:1–7 Prepared using cpeauth.cls [Version: 2002/09/19 v2.02] Taverna: Lessons in creating , 2022 .

[3]  James D. Myers,et al.  Re-integrating the research record , 2003, Comput. Sci. Eng..

[4]  Gregor von Laszewski,et al.  A Collaborative Informatics Infrastructure for Multi-Scale Science , 2004, Proceedings of the Second International Workshop on Challenges of Large Applications in Distributed Environments, 2004. CLADE 2004..

[5]  James A. Hendler,et al.  Web ontology language (OWL) reference version 1 , 2002 .

[6]  Gregor von Laszewski,et al.  A Java commodity grid kit , 2001, Concurr. Comput. Pract. Exp..

[7]  Ian Foster,et al.  The Grid 2 - Blueprint for a New Computing Infrastructure, Second Edition , 1998, The Grid 2, 2nd Edition.

[8]  James D. Myers,et al.  CyberIntegrator: A Highly Interactive Problem Solving Environment to Support Environmental Observatories , 2006 .

[9]  James D. Myers,et al.  Data Stream Technologies for the Semantic Web , 2008 .

[10]  E. James Whitehead,et al.  HTTP Extensions for Distributed Authoring - WEBDAV , 1999, RFC.

[11]  John Kunze,et al.  Towards Electronic Persistence Using ARK Identifiers , 2003 .

[12]  Jim Basney,et al.  Identity Federation and Attribute-based Authorization through the Globus Toolkit, Shibboleth, Grid , 2006 .

[13]  Luc Moreau,et al.  The Open Provenance Model , 2007 .

[14]  Tom Adams,et al.  mulgara semantic store , 2003 .

[15]  Ami Marowka,et al.  The GRID: Blueprint for a New Computing Infrastructure , 2000, Parallel Distributed Comput. Pract..

[16]  Billie F. Spencer,et al.  Cyberinfrastructure in support of earthquake loss assessment: The maeviz cyberenvironment , 2006 .

[17]  Yong Liu,et al.  Event-Driven Collaboration through Publish/Subscribe Messaging Services for Near-Real- Time Environmental Sensor Anomaly Detection and Management , 2006 .

[18]  Michael A. Olson DataBlade extensions for INFORMIX-Universal Server , 1997, Proceedings IEEE COMPCON 97. Digest of Papers.

[19]  Thomas G. Habing,et al.  Technical architecture overview: tools for acquisition, packaging and ingest of web objects into multiple repositories , 2006, Proceedings of the 6th ACM/IEEE-CS Joint Conference on Digital Libraries (JCDL '06).

[20]  James A. Hendler,et al.  E-Science: The Grid and the Semantic Web , 2004, IEEE Intell. Syst..

[21]  Brian F. Lavoie The Open Archival Information System Reference Model: Introductory Guide , 2004 .

[22]  Jonathan W. Essex,et al.  CombeChem: A Case Study in Provenance and Annotation Using the Semantic Web , 2006, IPAW.

[23]  Joe Futrelle,et al.  Digital library technology for locating and accessing scientific data , 1999, DL '99.

[24]  Geoffrey C. Fox,et al.  The Open Grid Computing Environments collaboration: portlets and services for science gateways , 2007, Concurr. Comput. Pract. Exp..

[25]  Tim Kindberg,et al.  The 'tag' URI Scheme , 2005, RFC.

[26]  G. Philip Robertson Long‐term ecological research: re‐inventing network science , 2008 .

[27]  H. Lan,et al.  SWRL : A semantic Web rule language combining OWL and ruleML , 2004 .

[28]  Yong Liu,et al.  Towards A Rich-Context Participatory Cyberenvironment , 2007 .

[29]  Rudolf Bayer,et al.  Towards Truly Extensible Database Systems , 2005, DEXA.