The Geography of Recent Genetic Ancestry across Europe

A genomic survey of recent genealogical relatedness reveals the close ties of kinship and the impact of events across the past 3,000 years of European history.

[1]  R. Fisher,et al.  A fuller theory of “Junctions” in inbreeding , 1954, Heredity.

[2]  G. R. Fraser,et al.  The mathematics of heredity , 1971 .

[3]  A. N. Tikhonov,et al.  Solutions of ill-posed problems , 1977 .

[4]  P. Menozzi,et al.  Synthetic maps of human gene frequencies in Europeans. , 1978, Science.

[5]  G. Grimmett,et al.  Probability and random processes , 2002 .

[6]  J. Kingman On the genealogy of large populations , 1982, Journal of Applied Probability.

[7]  K. P. Donnelly,et al.  The probability that related individuals share some section of genome identical by descent. , 1983, Theoretical population biology.

[8]  M. Stoneking,et al.  Mitochondrial DNA and human evolution , 1987, Nature.

[9]  R. Hudson Gene genealogies and the coalescent process. , 1990 .

[10]  H. Delbrück The barbarian invasions , 1990 .

[11]  M. Slatkin Inbreeding coefficients and coalescence times. , 1991, Genetical research.

[12]  N. Takahata,et al.  Allelic genealogy and human evolution. , 1993, Molecular biology and evolution.

[13]  Norman Davies,et al.  Europe: A History , 1996 .

[14]  R. Griffiths,et al.  An ancestral recombination graph , 1997 .

[15]  Joseph T. Chang Recent common ancestors of all present-day individuals , 1999, Advances in Applied Probability.

[16]  Arthur E. Hoerl,et al.  Ridge Regression: Biased Estimation for Nonorthogonal Problems , 2000, Technometrics.

[17]  W. Jason Owen,et al.  Statistical Data Analysis , 2000, Technometrics.

[18]  J. Weber,et al.  Olfactory receptor-gene clusters, genomic-inversion polymorphisms, and common chromosome rearrangements. , 2001, American journal of human genetics.

[19]  T. A. Smith,et al.  The Early Slavs. Culture and Society in Early Medieval Eastern Europe , 2001 .

[20]  Elizabeth A Thompson,et al.  The effect of population history on the lengths of ancestral chromosome segments. , 2002, Genetics.

[21]  F. Rousset,et al.  Inbreeding and relatedness coefficients: what do they measure? , 2002, Heredity.

[22]  Douglas L. T. Rohde,et al.  Modelling the recent common ancestry of all living humans , 2004, Nature.

[23]  P. Yuri,et al.  Well-posed, Ill-posed, and Intermediate Problems with Applications , 2005 .

[24]  Jack N. Fenner,et al.  Cross-cultural estimation of the human generation interval for use in genetics-based population divergence studies. , 2005, American journal of physical anthropology.

[25]  Ali Esmaili,et al.  Probability and Random Processes , 2005, Technometrics.

[26]  D. Reich,et al.  Population Structure and Eigenanalysis , 2006, PLoS genetics.

[27]  A. Gillett Ethnogenesis: A Contested Model of Early Medieval Europe , 2006 .

[28]  D. Reich,et al.  Principal components analysis corrects for stratification in genome-wide association studies , 2006, Nature Genetics.

[29]  Zhaohui S. Qin,et al.  A second generation human haplotype map of over 3.1 million SNPs , 2007, Nature.

[30]  Manuel A. R. Ferreira,et al.  PLINK: a tool set for whole-genome association and population-based linkage analyses. , 2007, American journal of human genetics.

[31]  J. Wakeley Coalescent Theory: An Introduction , 2008 .

[32]  Charles L. Epstein,et al.  The Bad Truth about Laplace's Transform , 2008, SIAM Rev..

[33]  Christian Gieger,et al.  Correlation between Genetic and Geographic Structure in Europe , 2008, Current Biology.

[34]  Andrew Collins,et al.  The genome-wide patterns of variation expose significant substructure in a founder population. , 2008, American journal of human genetics.

[35]  John Novembre,et al.  The Population Reference Sample, POPRES: a resource for population, disease, and pharmacological genetics research. , 2008, American journal of human genetics.

[36]  Amit R. Indap,et al.  Genes mirror geography within Europe , 2008, Nature.

[37]  M. Stephens,et al.  Interpreting principal component analyses of spatial population genetic variation , 2008, Nature Genetics.

[38]  Alexander Gusev,et al.  Whole population, genome-wide mapping of hidden relatedness. , 2009, Genome research.

[39]  R. Nielsen,et al.  Inference of Historical Changes in Migration Rate From the Lengths of Migrant Tracts , 2009, Genetics.

[40]  John Novembre,et al.  Global distribution of genomic diversity underscores rich complex history of continental human populations. , 2009, Genome research.

[41]  Kurt Hornik,et al.  Escaping RGBland: Selecting colors for statistical graphics , 2009, Comput. Stat. Data Anal..

[42]  Ole A. Andreassen,et al.  The Impact of Divergence Time on the Nature of Population Structure: An Example from Iceland , 2009, PLoS genetics.

[43]  G. McVean A Genealogical Interpretation of Principal Components Analysis , 2009, PLoS genetics.

[44]  G. Kirov,et al.  Population structure and genome-wide patterns of variation in Ireland and Britain , 2010, European Journal of Human Genetics.

[45]  P. Visscher,et al.  Reconciling the analysis of IBD and IBS in complex trait studies , 2010, Nature Reviews Genetics.

[46]  Andrew M. Stuart,et al.  Inverse problems: A Bayesian perspective , 2010, Acta Numerica.

[47]  Anders Albrechtsen,et al.  Natural Selection and the Distribution of Identity-by-Descent in the Human Genome , 2010, Genetics.

[48]  H. Bandelt,et al.  The Archaeogenetics of Europe , 2010, Current Biology.

[49]  H. Ostrer,et al.  The History of African Gene Flow into Southern Europeans, Levantines, and Jews , 2011, PLoS genetics.

[50]  Jinchuan Xing,et al.  Maximum-likelihood estimation of recent shared ancestry (ERSA). , 2011, Genome research.

[51]  R. Durbin,et al.  Inference of human population history from individual whole-genome sequences. , 2011, Nature.

[52]  John Novembre,et al.  Perspectives on human population structure at the cusp of the sequencing era. , 2011, Annual review of genomics and human genetics.

[53]  B. Browning,et al.  A fast, powerful method for detecting identity by descent. , 2011, American journal of human genetics.

[54]  I. Pe’er,et al.  Length distributions of identity by descent reveal fine-scale demographic history. , 2012, American journal of human genetics.

[55]  S. Gravel Population Genetics Models of Local Ancestry , 2012, Genetics.

[56]  Jacob A. Tennessen,et al.  Evolution and Functional Impact of Rare Coding Variation from Deep Sequencing of Human Exomes , 2012, Science.

[57]  Natalie M. Myres,et al.  New insights into the Tyrolean Iceman's origin and phenotype as inferred by whole-genome sequencing , 2012, Nature Communications.

[58]  C. Tyler-Smith,et al.  A British approach to sampling , 2011, European Journal of Human Genetics.

[59]  D. Falush,et al.  Inference of Population Structure using Dense Haplotype Data , 2012, PLoS genetics.

[60]  Claudio J. Verzilli,et al.  An Abundance of Rare Functional Variants in 202 Drug Target Genes Sequenced in 14,002 People , 2012, Science.

[61]  Itsik Pe'er,et al.  Cryptic Distant Relatives Are Common in Both Isolated and Cosmopolitan Genetic Samples , 2012, PloS one.

[62]  M. D. Brown,et al.  Inferring Coancestry in Population Samples in the Presence of Linkage Disequilibrium , 2012, Genetics.

[63]  P. Donnelly,et al.  People of the British Isles: preliminary analysis of genotypes and surnames in a UK-control population , 2011, European Journal of Human Genetics.

[64]  M. Jakobsson,et al.  Origins and Genetic Legacy of Neolithic Farmers and Hunter-Gatherers in Europe , 2012, Science.

[65]  Jake K. Byrnes,et al.  Genomic Ancestry of North Africans Supports Back-to-Africa Migrations , 2012, PLoS genetics.

[66]  Swapan Mallick,et al.  Ancient Admixture in Human History , 2012, Genetics.

[67]  Alexander Gusev,et al.  The architecture of long-range haplotypes shared within and across populations. , 2012, Molecular biology and evolution.

[68]  Vladimir Vacic,et al.  The Variance of Identity-by-Descent Sharing in the Wright–Fisher Model , 2012, Genetics.

[69]  R. Nielsen,et al.  Inferring Demographic History from a Spectrum of Shared Haplotype Lengths , 2013, PLoS genetics.

[70]  R Core Team,et al.  R: A language and environment for statistical computing. , 2014 .