Maize HapMap2 identifies extant variation from a genome in flux

[1]  Xun Xu,et al.  Comparative population genomics of maize domestication and improvement , 2012, Nature Genetics.

[2]  Peter J. Bradbury,et al.  Genome-wide nested association mapping of quantitative resistance to northern leaf blight in maize , 2011, Proceedings of the National Academy of Sciences.

[3]  B. Gaut,et al.  Genome Size and Transposable Element Content as Determined by High-Throughput Sequencing in Maize and Zea luxurians , 2011, Genome biology and evolution.

[4]  Peter J. Bradbury,et al.  Genome-wide association study of quantitative resistance to southern leaf blight in the maize nested association mapping population , 2011, Nature Genetics.

[5]  Peter J. Bradbury,et al.  Genome-wide association study of leaf architecture in the maize nested association mapping population , 2011, Nature Genetics.

[6]  Peter Tiffin,et al.  Pervasive gene content variation and copy number variation in maize and its undomesticated progenitor. , 2010, Genome research.

[7]  Jian Wang,et al.  Genome-wide patterns of genetic variation among elite maize inbred lines , 2010, Nature Genetics.

[8]  Heng Li,et al.  A survey of sequence alignment algorithms for next-generation sequencing , 2010, Briefings Bioinform..

[9]  Asan,et al.  Sequencing of 50 Human Exomes Reveals Adaptation to High Altitude , 2010, Science.

[10]  J. Birchler,et al.  Diversity of Chromosomal Karyotypes in Maize and Its Relatives , 2010, Cytogenetic and Genome Research.

[11]  Mark D. Robinson,et al.  edgeR: a Bioconductor package for differential expression analysis of digital gene expression data , 2009, Bioinform..

[12]  Robert J. Elshire,et al.  A First-Generation Haplotype Map of Maize , 2009, Science.

[13]  Dawn H. Nagel,et al.  The B73 Maize Genome: Complexity, Diversity, and Dynamics , 2009, Science.

[14]  Cristian Chaparro,et al.  Exceptional Diversity, Non-Random Distribution, and Rapid Evolution of Retroelements in the B73 Maize Genome , 2009, PLoS genetics.

[15]  M. McMullen,et al.  Genetic Properties of the Maize Nested Association Mapping Population , 2009, Science.

[16]  Siu-Ming Yiu,et al.  SOAP2: an improved ultrafast tool for short read alignment , 2009, Bioinform..

[17]  Gonçalo R. Abecasis,et al.  The Sequence Alignment/Map format and SAMtools , 2009, Bioinform..

[18]  Huanming Yang,et al.  SNP detection for massively parallel whole-genome resequencing. , 2009, Genome research.

[19]  Mihaela M. Martis,et al.  The Sorghum bicolor genome and the diversification of grasses , 2009, Nature.

[20]  Cole Trapnell,et al.  Ultrafast and memory-efficient alignment of short DNA sequences to the human genome , 2009, Genome Biology.

[21]  Arnaud Le Rouzic,et al.  Long-term evolution of transposable elements , 2007, Proceedings of the National Academy of Sciences.

[22]  Richard M. Clark,et al.  Common Sequence Polymorphisms Shaping Genetic Diversity in Arabidopsis thaliana , 2007, Science.

[23]  Michele Morgante,et al.  Transposable elements and the plant pan-genomes. , 2007, Current opinion in plant biology.

[24]  E. Earle,et al.  Estimation of nuclear DNA content of plants by flow cytometry , 1991, Plant Molecular Biology Reporter.

[25]  S. Jackson,et al.  Doubling genome size without polyploidization: dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice. , 2006, Genome research.

[26]  Carene Rizzon,et al.  Striking Similarities in the Genomic Distribution of Tandemly Arrayed Genes in Arabidopsis and Rice , 2006, PLoS Comput. Biol..

[27]  Steven G. Schroeder,et al.  The Effects of Artificial Selection on the Maize Genome , 2005, Science.

[28]  Michele Morgante,et al.  Evolution of DNA Sequence Nonhomologies among Maize Inbredsw⃞ , 2005, The Plant Cell Online.

[29]  W. G. Hill,et al.  Linkage disequilibrium in finite populations , 1968, Theoretical and Applied Genetics.

[30]  Jean YH Yang,et al.  Bioconductor: open software development for computational biology and bioinformatics , 2004, Genome Biology.

[31]  H. Fu,et al.  Intraspecific violation of genetic colinearity and its implications in maize , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[32]  M. Morgante,et al.  Abundance, distribution, and transcriptional activity of repetitive elements in the maize genome. , 2001, Genome research.

[33]  J. Mullikin,et al.  SSAHA: a fast search method for large DNA databases. , 2001, Genome research.

[34]  Brandon S. Gaut,et al.  Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.) , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[35]  B. Gaut,et al.  Maize as a model for the evolution of plant nuclear genomes. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[36]  B. Gaut.  Sawkins, Maize as a model for evolution of plant nuclear genomes , 2000 .

[37]  L. Poggio,et al.  Genome Size and Environmental Correlations in Maize (Zea mays ssp. mays, Poaceae) , 1998 .

[38]  Phillip SanMiguel,et al.  The paleontology of intergene retrotransposons of maize , 1998, Nature Genetics.

[39]  E. Myers,et al.  Basic local alignment search tool. , 1990, Journal of molecular biology.

[40]  D. Laurie,et al.  Nuclear DNA content in the genera Zea and Sorghum. Intergeneric, interspecific and intraspecific variation , 1985, Heredity.

[41]  E. Anderson.  Cytological Observations on Tripsacum dactyloides , 1944 .