Nuclear compression-mediated DNA damage drives ATR-dependent Lamin expression and mouse ESC differentiation

Embryonic stem cells (ESCs) which are susceptible to DNA damage depend on a robust and highly efficient DNA damage response (DDR) mechanism for their survival. However, the implications of physical force-mediated DNA damage on ESC fate remains unclear. We show that stiffness-dependent spreading of mouse ESCs (mESCs) induces DNA damage through nuclear compression, with DNA damage causing differentiation through early induction of Lamin A/C expression. Interestingly, differentiation is associated with rescue of DNA damage and activation of the DDR factor ATR. While ATR is typically known to play roles in DDR pathway, its role during stiffness-mediated nuclear compression and mESC differentiation is unknown. Nuclear enrichment of activated ATR on stiff substrates and reduction of Lamin A/C expression upon ATR inhibition suggests that mESC differentiation is driven by nuclear compression-mediated DNA damage and involves ATR-dependent modulation of Lamin A/C.

[1]  D. Loew,et al.  DNA damage induces nuclear envelope rupture through ATR-mediated phosphorylation of lamin A/C , 2023, Molecular cell.

[2]  T. Wieland,et al.  Lamin A/C-dependent chromatin architecture safeguards naïve pluripotency to prevent aberrant cardiovascular cell fate and function , 2022, Nature Communications.

[3]  M. Moser,et al.  Mechanism of integrin activation by talin and its cooperation with kindlin , 2022, Nature Communications.

[4]  S. Demaria,et al.  ATM Modulates Nuclear Mechanics by Regulating Lamin A Levels , 2022, bioRxiv.

[5]  S. Sen,et al.  MMP modulated differentiation of mouse embryonic stem cells on engineered cell derived matrices. , 2021, Biomaterials.

[6]  S. Gonzalo,et al.  Lamin A/C recruits ssDNA protective proteins RPA and RAD51 to stalled replication forks to maintain fork stability , 2021, The Journal of biological chemistry.

[7]  C. Toseland,et al.  Regulation of Nuclear Mechanics and the Impact on DNA Damage , 2021, International journal of molecular sciences.

[8]  Jianping Fu,et al.  Mechanical Tension Promotes Formation of Gastrulation-like Nodes and Patterns Mesoderm Specification in Human Embryonic Stem Cells. , 2020, Developmental cell.

[9]  J. Bartek,et al.  ATR is essential for preservation of cell mechanics and nuclear integrity during interstitial migration , 2020, Nature Communications.

[10]  R. Superfine,et al.  Nuclear Deformation Causes DNA Damage by Increasing Replication Stress , 2020, Current Biology.

[11]  P. Janmey,et al.  The Atr-Chek1 pathway inhibits axon regeneration in response to Piezo-dependent mechanosensation , 2020, Nature Communications.

[12]  C. Lim,et al.  Nanoscale Architecture of the Cortical Actin Cytoskeleton in Embryonic Stem Cells. , 2019, Cell reports.

[13]  Lucas R. Smith,et al.  Constricted migration modulates stem cell differentiation , 2019, Molecular biology of the cell.

[14]  R. Greenberg,et al.  Mechanosensing by the lamina protects against nuclear rupture, DNA damage, and cell cycle arrest , 2019, bioRxiv.

[15]  Zhihe Zhao,et al.  The role of lamin A/C in mesenchymal stem cell differentiation , 2019, Journal of Physiology and Biochemistry.

[16]  P. Serup,et al.  Mechanosignalling via integrins directs fate decisions of pancreatic progenitors , 2018, Nature.

[17]  Aijun Wang,et al.  Matrix stiffness modulates the differentiation of neural crest stem cells in vivo , 2018, Journal of cellular physiology.

[18]  H. Qian,et al.  The Stem Cell Niche: Interactions between Stem Cells and Their Environment , 2018, Stem cells international.

[19]  S. Sen,et al.  Initial Priming on Soft Substrates Enhances Subsequent Topography-Induced Neuronal Differentiation in ESCs but Not in MSCs. , 2018, ACS biomaterials science & engineering.

[20]  Lucas R. Smith,et al.  Nuclear rupture at sites of high curvature compromises retention of DNA repair factors , 2018, The Journal of cell biology.

[21]  S. Gonzalo,et al.  Causes and consequences of genomic instability in laminopathies: Replication stress and interferon response , 2018, Nucleus.

[22]  Emma T. Pineda,et al.  Actin and myosin II modulate differentiation of pluripotent stem cells , 2018, PloS one.

[23]  S. Sen,et al.  MMP proteolytic activity regulates cancer invasiveness by modulating integrins , 2017, Scientific Reports.

[24]  Jan Lammerding,et al.  Bursting the Bubble - Nuclear Envelope Rupture as a Path to Genomic Instability? , 2017, Trends in cell biology.

[25]  A. Mantalaris,et al.  Fibronectin stimulates the osteogenic differentiation of murine embryonic stem cells , 2017, Journal of tissue engineering and regenerative medicine.

[26]  L. Galluzzi,et al.  DNA Damage in Stem Cells. , 2017, Molecular cell.

[27]  S. Sen,et al.  Biophysical regulation of mouse embryonic stem cell fate and genomic integrity by feeder derived matrices. , 2017, Biomaterials.

[28]  Sanghee Lim,et al.  Nuclear envelope rupture drives genome instability in cancer , 2016, Molecular biology of the cell.

[29]  Katarina Wolf,et al.  Nuclear envelope rupture: Actin fibers are putting the squeeze on the nucleus , 2016, The Journal of cell biology.

[30]  A. E. Haj,et al.  Pluripotent Stem Cells and Their Dynamic Niche , 2016 .

[31]  Jan Lammerding,et al.  Nuclear envelope rupture and repair during cancer cell migration , 2016, Science.

[32]  Raquel Herrador,et al.  A short G1 phase imposes constitutive replication stress and fork remodelling in mouse embryonic stem cells , 2016, Nature Communications.

[33]  D. Kaufman,et al.  Use of RUNX2 Expression to Identify Osteogenic Progenitor Cells Derived from Human Embryonic Stem Cells , 2015, Stem cell reports.

[34]  N. Mailand,et al.  Lamin A/C-dependent interaction with 53BP1 promotes cellular responses to DNA damage , 2015, Aging cell.

[35]  N. Lévy,et al.  Prelamin A accumulation in endothelial cells induces premature senescence and functional impairment. , 2014, Atherosclerosis.

[36]  G. Shivashankar,et al.  ATR Mediates a Checkpoint at the Nuclear Envelope in Response to Mechanical Stress , 2014, Cell.

[37]  U. Keyser,et al.  Auxetic nuclei in embryonic stem cells exiting pluripotency. , 2014, Nature materials.

[38]  Dennis E. Discher,et al.  Nuclear Lamin-A Scales with Tissue Stiffness and Enhances Matrix-Directed Differentiation , 2013, Science.

[39]  R. Kumaran,et al.  Lamin A/C Haploinsufficiency Modulates the Differentiation Potential of Mouse Embryonic Stem Cells , 2013, PloS one.

[40]  F. Rassool,et al.  DNA double-strand break response in stem cells: mechanisms to maintain genomic integrity. , 2013, Biochimica et biophysica acta.

[41]  S. K. Zaidi,et al.  The abbreviated pluripotent cell cycle , 2013, Journal of cellular physiology.

[42]  A. Martinez-Arias,et al.  Chromatin decondensation and nuclear softening accompany Nanog downregulation in embryonic stem cells. , 2012, Biophysical journal.

[43]  David A. Brafman,et al.  Regulation of endodermal differentiation of human embryonic stem cells through integrin-ECM interactions , 2012, Cell Death and Differentiation.

[44]  David Staudt,et al.  Uncovering the molecular and cellular mechanisms of heart development using the zebrafish. , 2012, Annual review of genetics.

[45]  Han-Na Suh,et al.  Collagen I regulates the self‐renewal of mouse embryonic stem cells through α2β1 integrin‐ and DDR1‐dependent Bmi‐1 , 2011, Journal of cellular physiology.

[46]  A. Perets,et al.  Fibronectin-mediated upregulation of α5β1 integrin and cell adhesion during differentiation of mouse embryonic stem cells , 2011, Cell adhesion & migration.

[47]  T. Paull,et al.  ATM activation in the presence of oxidative stress , 2010, Cell cycle.

[48]  Ning Wang,et al.  Soft Substrates Promote Homogeneous Self-Renewal of Embryonic Stem Cells via Downregulating Cell-Matrix Tractions , 2010, PloS one.

[49]  Donald M. Bell,et al.  Tbx6-dependent Sox2 regulation determines neural vs mesodermal fate in axial stem cells , 2010, Nature.

[50]  M. Lavin,et al.  ATM Activation by Oxidative Stress , 2010, Science.

[51]  A. Engler,et al.  Preparation of Hydrogel Substrates with Tunable Mechanical Properties , 2010, Current protocols in cell biology.

[52]  K. Turksen,et al.  Involucrin–claudin-6 tail deletion mutant (CΔ206) transgenic mice: a model of delayed epidermal permeability barrier formation and repair , 2010, Disease Models & Mechanisms.

[53]  F. Dilworth,et al.  Caspase 3/caspase-activated DNase promote cell differentiation by inducing DNA strand breaks , 2010, Proceedings of the National Academy of Sciences.

[54]  J. Rossant,et al.  Gata3 regulates trophoblast development downstream of Tead4 and in parallel to Cdx2 , 2010, Development.

[55]  Caterina Minelli,et al.  Substrate stiffness affects early differentiation events in embryonic stem cells. , 2009, European cells & materials.

[56]  Abena B. Redwood,et al.  Novel roles for A‐type lamins in telomere biology and the DNA damage response pathway , 2009, The EMBO journal.

[57]  K. Kaestner,et al.  Sox17 regulates organ lineage segregation of ventral foregut progenitor cells. , 2009, Developmental cell.

[58]  Sean J. Morrison,et al.  Stem Cells and Niches: Mechanisms That Promote Stem Cell Maintenance throughout Life , 2008, Cell.

[59]  R. Sherwood,et al.  Genetic targeting of the endoderm with claudin-6CreER , 2008, Developmental dynamics : an official publication of the American Association of Anatomists.

[60]  Yohei Hayashi,et al.  Integrins Regulate Mouse Embryonic Stem Cell Self‐Renewal , 2007, Stem cells.

[61]  Linheng Li,et al.  Stem cells and their niche: an inseparable relationship , 2007, Development.

[62]  Jiong Wu,et al.  Regulation of Apoptosis and Differentiation by p53 in Human Embryonic Stem Cells* , 2007, Journal of Biological Chemistry.

[63]  J. Schneider,et al.  ATM-dependent suppression of stress signaling reduces vascular disease in metabolic syndrome. , 2006, Cell metabolism.

[64]  S. Sen,et al.  Matrix Elasticity Directs Stem Cell Lineage Specification , 2006, Cell.

[65]  S. Murray,et al.  Snail family genes are required for left–right asymmetry determination, but not neural crest formation, in mice , 2006, Proceedings of the National Academy of Sciences.

[66]  A. Dierich,et al.  Apoptosis and differentiation commitment: novel insights revealed by gene profiling studies in mouse embryonic stem cells , 2006, Cell Death and Differentiation.

[67]  F. Saltel,et al.  The mechanisms and dynamics of αvβ3 integrin clustering in living cells , 2005, The Journal of cell biology.

[68]  E. Willems,et al.  Expression of all Wnt genes and their secreted antagonists during mouse blastocyst and postimplantation development , 2005, Developmental dynamics : an official publication of the American Association of Anatomists.

[69]  David J. Chen,et al.  Genomic instability in laminopathy-based premature aging , 2005, Nature Medicine.

[70]  Klaus H. Kaestner,et al.  The initiation of liver development is dependent on Foxa transcription factors , 2005, Nature.

[71]  Ettore Appella,et al.  p53 induces differentiation of mouse embryonic stem cells by suppressing Nanog expression , 2005, Nature Cell Biology.

[72]  Li Zhong,et al.  Murine embryonic stem cell differentiation is promoted by SOCS-3 and inhibited by the zinc finger transcription factor Klf4. , 2005, Blood.

[73]  J. Hescheler,et al.  Embryonic stem cells: a promising tool for cell replacement therapy , 2004, Journal of cellular and molecular medicine.

[74]  C. Rüegg,et al.  Manganese-induced integrin affinity maturation promotes recruitment of αVβ3 integrin to focal adhesions in endothelial cells: evidence for a role of phosphatidylinositol 3-kinase and Src , 2004, Thrombosis and Haemostasis.

[75]  D. Loebel,et al.  Twist is required for patterning the cranial nerves and maintaining the viability of mesodermal cells , 2004, Developmental dynamics : an official publication of the American Association of Anatomists.

[76]  M. Arenas,et al.  Nestin, a neuroectodermal stem cell marker molecule, is expressed in Leydig cells of the human testis and in some specific cell types from human testicular tumours , 2004, Cell and Tissue Research.

[77]  C. Kedinger,et al.  A p38 inhibitor allows to dissociate differentiation and apoptotic processes triggered upon LIF withdrawal in mouse embryonic stem cells , 2004, Cell Death and Differentiation.

[78]  Richard T. Lee,et al.  Lamin A/C deficiency causes defective nuclear mechanics and mechanotransduction. , 2004, The Journal of clinical investigation.

[79]  M. Murakami,et al.  The Homeoprotein Nanog Is Required for Maintenance of Pluripotency in Mouse Epiblast and ES Cells , 2003, Cell.

[80]  J. Nichols,et al.  Functional Expression Cloning of Nanog, a Pluripotency Sustaining Factor in Embryonic Stem Cells , 2003, Cell.

[81]  J. Zhu,et al.  A myogenic differentiation checkpoint activated by genotoxic stress , 2002, Nature Genetics.

[82]  R. Behringer,et al.  Twist function is required for the morphogenesis of the cephalic neural tube and the differentiation of the cranial neural crest cells in the mouse embryo. , 2002, Developmental biology.

[83]  J. Miyazaki,et al.  Quantitative expression of Oct-3/4 defines differentiation, dedifferentiation or self-renewal of ES cells , 2000, Nature Genetics.

[84]  Y. Ip,et al.  The mesoderm determinant Snail collaborates with related zinc‐finger proteins to control Drosophila neurogenesis , 1999, The EMBO journal.

[85]  P. D’Eustachio,et al.  Essential role of STAT3 for embryonic stem cell pluripotency. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[86]  H. Schöler,et al.  Formation of Pluripotent Stem Cells in the Mammalian Embryo Depends on the POU Transcription Factor Oct4 , 1998, Cell.

[87]  Virginia E. Papaioannou,et al.  Three neural tubes in mouse embryos with mutations in the T-box gene Tbx6 , 1998, Nature.

[88]  N. Benvenisty,et al.  Involvement of hepatocyte nuclear factor 3 in endoderm differentiation of embryonic stem cells , 1997, Molecular and cellular biology.

[89]  J. Saffitz,et al.  Targeted mutagenesis of the transcription factor GATA-4 gene in mouse embryonic stem cells disrupts visceral endoderm differentiation in vitro. , 1995, Development.

[90]  B. Thisse,et al.  The twist gene: isolation of a Drosophila zygotic gene necessary for the establishment of dorsoventral pattern. , 1987, Nucleic acids research.

[91]  G. Martin,et al.  Isolation of a pluripotent cell line from early mouse embryos cultured in medium conditioned by teratocarcinoma stem cells. , 1981, Proceedings of the National Academy of Sciences of the United States of America.

[92]  S. Gonzalo DNA damage and lamins. , 2014, Advances in experimental medicine and biology.

[93]  T. Paull,et al.  The ATM protein kinase and cellular redox signaling: beyond the DNA damage response. , 2012, Trends in biochemical sciences.

[94]  R. Lovell-Badge,et al.  Multipotent cell lineages in early mouse development depend on SOX2 function. , 2003, Genes & development.