Semi-empirical topological index: a tool for QSPR/QSAR studies

The semi-empirical topological index (IET), developed to predict the chromatographic retention of a series of organic compounds, is extended to predict other properties and biological activities of aliphatic alcohols. This topological index takes into account the contribution of each individual atom type to the property considered and is able to encode information about structural features of the molecules. The efficiency of this index is verified by high quality Structure - Property and structure - Activity Relationships (QSPR/QSAR) models obtained for several representative physicochemical properties, biological activities and toxicities of aliphatic alcohols. Most of the properties investigated are well modeled (r > 0.98) employing the IET. Cross-validation using the more general leave-one-out method demonstrates that these models are highly statistically reliable. The proposed IET index promises to be a useful descriptor in the QSPR/QSAR studies.

[1]  Chenzhong Cao,et al.  Molecular Polarizability. 1. Relationship to Water Solubility of Alkanes and Alcohols , 1998, J. Chem. Inf. Comput. Sci..

[2]  Relationship between kováts retention indices and molecular connectivity indices of tetralones, coumarins and structurally related compounds , 1993 .

[3]  Biye Ren,et al.  Novel Atom-type AI Indices for QSPR Studies of Alcohols , 2002, Comput. Chem..

[4]  Lemont B. Kier,et al.  The electrotopological state: structure information at the atomic level for molecular graphs , 1991, J. Chem. Inf. Comput. Sci..

[5]  Ekaterina Gordeeva,et al.  Traditional topological indexes vs electronic, geometrical, and combined molecular descriptors in QSAR/QSPR research , 1993, J. Chem. Inf. Comput. Sci..

[6]  H. Kubinyi QSAR: Hansch Analysis and Related Approaches: Kubinyi/QSAR , 1993 .

[7]  P. Jurs,et al.  Quantitative structure-retention relationship studies of odor-active aliphatic compounds with oxygen-containing functional groups. , 1990, Analytical chemistry.

[8]  Han van de Waterbeemd,et al.  Chemometric Methods in Molecular Design: van de Waterbeemd/Chemometric , 1995 .

[9]  Biye Ren,et al.  Application of novel atom-type AI topological indices in the structure-property correlations , 2002 .

[10]  R. Yunes,et al.  Semi-empirical topological method for the prediction of the chromatographic retention of cis- and trans-alkene isomers and alkanes. , 1999, Journal of chromatography. A.

[11]  M. Randic,et al.  The connectivity index 25 years after. , 2001, Journal of molecular graphics & modelling.

[12]  R. Yunes,et al.  Correlation of activity of 2-(X-benzyloxy)-4,6-dimethoxyacetophenones with topological indices and with the Hansch equation. , 1999, Farmaco.

[14]  Ernesto Estrada,et al.  Generalization of topological indices , 2001 .

[15]  R. Yunes,et al.  Quantitative structure—Retention relationships (QSRR), using the optimum semi-empirical topological index, for methyl-branched alkanes produced by insects , 2002 .

[16]  R. Yunes,et al.  Quantitative structure–property relationship study of chromatographic retention indices and normal boiling points for oxo compounds using the semi-empirical topological method , 2002 .

[17]  Biye Ren,et al.  Novel Atomic-Level-Based AI Topological Descriptors: Application to QSPR/QSAR Modeling , 2002, J. Chem. Inf. Comput. Sci..

[18]  R. Yunes,et al.  Use of a semi-empirical topological method to predict the chromatographic retention of branched alkenes , 2002 .

[19]  R. Yunes,et al.  Quantitative structure-odor relationships of aliphatic esters using topological indices. , 2000, Journal of agricultural and food chemistry.

[20]  Zlatko Mihalić,et al.  A graph-theoretical approach to structure-property relationships , 1992 .

[21]  A. Katritzky,et al.  QSPR correlation and predictions of GC retention indexes for methyl-branched hydrocarbons produced by insects. , 2000, Analytical chemistry.

[22]  Milan Randić,et al.  Comparative Regression Analysis. Regressions Based on a Single Descriptor , 1993 .

[23]  R. Yunes,et al.  Prediction of the chromatographic retention of saturated alcohols on stationary phases of different polarity applying the novel semi-empirical topological index , 2003 .

[24]  Jorge Gálvez,et al.  Charge Indexes. New Topological Descriptors , 1994, J. Chem. Inf. Comput. Sci..

[25]  G. Romanelli An improved QSAR study of toxicity of saturated alcohols , 2000 .

[26]  Han van de Waterbeemd,et al.  Chemometric methods in molecular design , 1995 .

[27]  R. Yunes,et al.  Using topological indices in the prediction of gas chromatographic retention indices of linear alkylbenzene isomers , 1996 .

[28]  M. Karelson,et al.  Quantum-Chemical Descriptors in QSAR/QSPR Studies. , 1996, Chemical reviews.

[29]  Lemont B. Kier,et al.  An Electrotopological-State Index for Atoms in Molecules , 1990, Pharmaceutical Research.

[30]  Emilio Benfenati,et al.  Interpretation of Quantitative Structure-Property and -Activity Relationships , 2001, J. Chem. Inf. Comput. Sci..

[31]  Comparative QSAR study with electronic and steric parameters for cAMP derivatives with large substituents in positions 2, 6 and 8 , 1995 .

[32]  Semi-empirical topological method for prediction of the chromatographic retention of esters , 2002 .

[33]  H. Kubinyi QSAR : Hansch analysis and related approaches , 1993 .

[34]  R. Yunes,et al.  Correlation between gas chromatographic retention indices of linear alkylbenzene isomers and molecular connectivity indices , 1993 .

[35]  E Uriarte,et al.  Recent advances on the role of topological indices in drug discovery research. , 2001, Current medicinal chemistry.

[36]  M. Karelson,et al.  Structurally diverse quantitative structure--property relationship correlations of technologically relevant physical properties , 2000, Journal of chemical information and computer sciences.

[37]  Peter C. Jurs,et al.  Prediction of boiling points of alcohols from molecular structure , 1990 .