cis-diol dehydrogenases encoded by the TOL pWW0 plasmid xylL gene and the Acinetobacter calcoaceticus chromosomal benD gene are members of the short-chain alcohol dehydrogenase superfamily.

In the aerobic degradation of benzoate by bacteria, benzoate is first dihydroxylated by a ring-hydroxylating dioxygenase to form a cis-diol (1,2-dihydroxycyclohexa-3,4-diene carboxylate) which is subsequently transformed to a catechol by an NAD(+)-dependent cis-diol dehydrogenase. The structural gene for this dehydrogenase, encoded on TOL plasmid pWW0 of Pseudomonas putida (xylL) and that encoded on the chromosome of Acinetobacter calcoaceticus (benD), were sequenced. They encode polypeptides of about 28 kDa in size. These proteins are similar to each other, exhibiting 58% sequence identity. They are also similar to other proteins of at least 20 different functions, which are members of the short-chain alcohol dehydrogenase family. The alignment of these proteins suggest two amino acids, lysine and tyrosine, as catalytically important residues.

[1]  M. Takagi,et al.  Nucleotide sequencing and characterization of the genes encoding benzene oxidation enzymes of Pseudomonas putida , 1987, Journal of bacteriology.

[2]  A. Sinskey,et al.  Poly-beta-hydroxybutyrate biosynthesis in Alcaligenes eutrophus H16. Characterization of the genes encoding beta-ketothiolase and acetoacetyl-CoA reductase. , 1989, The Journal of biological chemistry.

[3]  H. Gassen,et al.  Identification and isolation of glucose dehydrogenase genes of Bacillus megaterium M1286 and their expression in Escherichia coli. , 1988, European journal of biochemistry.

[4]  S. Taylor,et al.  Ribitol dehydrogenase of Klebsiella aerogenes. Sequence and properties of wild-type and mutant strains. , 1985, The Biochemical journal.

[5]  R. Vihko,et al.  Complete amino acid sequence of human placental 17β‐hydroxysteroid dehydrogenase deduced from cDNA , 1988, FEBS letters.

[6]  P. White,et al.  Cloning and expression of rat cDNA encoding corticosteroid 11 beta-dehydrogenase. , 1989, The Journal of biological chemistry.

[7]  D. Gibson,et al.  Identification of cis-diols as intermediates in the oxidation of aromatic acids by a strain of Pseudomonas putida that contains a TOL plasmid , 1986, Journal of bacteriology.

[8]  P. Hylemon,et al.  Multiple copies of a bile acid-inducible gene in Eubacterium sp. strain VPI 12708 , 1990, Journal of bacteriology.

[9]  G. Ringold,et al.  A growth factor-repressible gene associated with protein kinase C- mediated inhibition of adipocyte differentiation , 1988, The Journal of cell biology.

[10]  D. Gibson,et al.  Toluene degradation by Pseudomonas putida F1. Nucleotide sequence of the todC1C2BADE genes and their expression in Escherichia coli. , 1989, The Journal of biological chemistry.

[11]  J. Hunt,et al.  Rates of DNA change and phylogeny from the DNA sequences of the alcohol dehydrogenase gene for five closely related species of Hawaiian Drosophila. , 1991, Molecular biology and evolution.

[12]  S. Hallam,et al.  Nucleotide sequence, transcription and deduced function of a gene involved in polyketide antibiotic synthesis in Streptomyces coelicolor. , 1988, Gene.

[13]  J. Aitchison,et al.  cDNA cloning and primary structure determination of the peroxisomal trifunctional enzyme hydratase-dehydrogenase-epimerase from the yeast Candida tropicalis pK233. , 1988, Gene.

[14]  E. Neidle,et al.  Cloning and expression in Escherichia coli of Acinetobacter calcoaceticus genes for benzoate degradation , 1987, Journal of bacteriology.

[15]  M. Ashburner,et al.  Conservation and change in the DNA sequences coding for alcohol dehydrogenase in sibling species of Drosophila , 1984, Nature.

[16]  Z. Chen,et al.  Site-directed mutagenesis of glycine-14 and two "critical" cysteinyl residues in Drosophila alcohol dehydrogenase. , 1990, Biochemistry.

[17]  H. Tai,et al.  Site-directed mutagenesis of the conserved tyrosine 151 of human placental NAD(+)-dependent 15-hydroxyprostaglandin dehydrogenase yields a catalytically inactive enzyme. , 1991, Biochemical and biophysical research communications.

[18]  C. Yanisch-Perron,et al.  Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. , 1985, Gene.

[19]  F. Sweet,et al.  Bifunctional enzyme activity at the same active site: study of 3 alpha and 20 beta activity by affinity alkylation of 3 alpha, 20 beta-hydroxysteroid dehydrogenase with 17-(bromoacetoxy)steroids. , 1980, Biochemistry.

[20]  M. Bibb,et al.  Structure and deduced function of the granaticin‐producing polyketide synthase gene cluster of Streptomyces violaceoruber Tü22. , 1989, The EMBO journal.

[21]  J. Liu,et al.  Nucleotide sequence of a cluster of Escherichia coli enterobactin biosynthesis genes: identification of entA and purification of its product 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase , 1989, Journal of bacteriology.

[22]  H. Jörnvall,et al.  Alcohol and polyol dehydrogenases are both divided into two protein types, and structural properties cross-relate the different enzyme activities within each type. , 1981, Proceedings of the National Academy of Sciences of the United States of America.

[23]  M. Baker,et al.  A common ancestor for Candida tropicalis and dehydrogenases that synthesize antibiotics and steroids , 1990, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[24]  J. Shine,et al.  The 3'-terminal sequence of Escherichia coli 16S ribosomal RNA: complementarity to nonsense triplets and ribosome binding sites. , 1974, Proceedings of the National Academy of Sciences of the United States of America.

[25]  K. Furukawa,et al.  Nucleotide sequence of the 2,3-dihydroxybiphenyl dioxygenase gene of Pseudomonas pseudoalcaligenes , 1987, Journal of bacteriology.

[26]  M Krook,et al.  Characteristics of short-chain alcohol dehydrogenases and related enzymes. , 1991, European journal of biochemistry.

[27]  B. Horváth,et al.  Organization, structure and symbiotic function of rhizobium meliloti nodulation genes determining host specificity for alfalfa , 1986, Cell.

[28]  B. Axcell,et al.  The metabolism of benzene by bacteria. Purification and some properties of the enzyme cis-1,2-dihydroxycyclohexa-3,5-diene (nicotinamide adenine dinucleotide) oxidoreductase (cis-benzene glycol dehydrogenase). , 1973, The Biochemical journal.

[29]  D. Lipman,et al.  Rapid and sensitive protein similarity searches. , 1985, Science.

[30]  P. Terpstra,et al.  Prediction of the Occurrence of the ADP-binding βαβ-fold in Proteins, Using an Amino Acid Sequence Fingerprint , 1986 .

[31]  L. Sawyer,et al.  Secondary-structure prediction from the sequence of Drosophila melanogaster (fruitfly) alcohol dehydrogenase. , 1980, The Biochemical journal.

[32]  D. Higgins,et al.  See Blockindiscussions, Blockinstats, Blockinand Blockinauthor Blockinprofiles Blockinfor Blockinthis Blockinpublication Clustal: Blockina Blockinpackage Blockinfor Blockinperforming Multiple Blockinsequence Blockinalignment Blockinon Blockina Minicomputer Article Blockin Blockinin Blockin , 2022 .

[33]  F. Debellé,et al.  Nucleotide sequence of Rhizobium meliloti RCR2011 genes involved in host specificity of nodulation. , 1986, Nucleic acids research.

[34]  B. Wermuth,et al.  Human carbonyl reductase. Nucleotide sequence analysis of a cDNA and amino acid sequence of the encoded protein. , 1988, The Journal of biological chemistry.

[35]  P. Karplus,et al.  Atomic structure of ferredoxin-NADP+ reductase: prototype for a structurally novel flavoenzyme family. , 1991, Science.

[36]  H. Hennecke,et al.  The symbiotic nitrogen fixation regulatory operon (fixRnifA) of Bradyrhizobium japonicum is expressed aerobically and is subject to a novel, nifA-independent type of activation. , 1987, Nucleic acids research.

[37]  J. Garnier,et al.  Analysis of the accuracy and implications of simple methods for predicting the secondary structure of globular proteins. , 1978, Journal of molecular biology.

[38]  J. Rogers The role of introns in evolution , 1990, FEBS letters.

[39]  Y. Koyama,et al.  Cloning, sequencing, and expression of the N-acyl-D-mannosamine dehydrogenase gene from Flavobacterium sp. strain 141-8 in Escherichia coli , 1991, Applied and environmental microbiology.

[40]  D. Thatcher The complete amino acid sequence of three alcohol dehydrogenase alleloenzymes (AdhN-11, AdhS and AdhUF) from the fruitfly Drosophila melanogaster. , 1980, The Biochemical journal.

[41]  K. Chater,et al.  Genetics of bacterial diversity , 1989 .

[42]  A. Bairoch,et al.  Nucleotide sequences of the Acinetobacter calcoaceticus benABC genes for benzoate 1,2-dioxygenase reveal evolutionary relationships among multicomponent oxygenases , 1991, Journal of bacteriology.

[43]  H. Jörnvall,et al.  Prokaryotic 20β‐hydroxysteroid dehydrogenase is an enzyme of the ‘short‐chain, non‐metalloenzyme’ alcohol dehydrogenase type , 1990, FEBS letters.

[44]  K. Jany,et al.  Complete amino acid sequence of glucose dehydrogenase from Bacillus megaterium , 1984, FEBS letters.

[45]  D. Gibson,et al.  Purification and Propeties of (+)-cis-Naphthalene Dihydrodiol Dehydrogenase of Pseudomonas putida , 1974, Journal of bacteriology.

[46]  H. Jörnvall,et al.  Pseudomonas 3β‐hydroxysteroid dehydrogenase , 1991 .

[47]  P. Hylemon,et al.  Nucleotide sequence and regulation of a gene involved in bile acid 7-dehydroxylation by Eubacterium sp. strain VPI 12708 , 1988, Journal of bacteriology.

[48]  H. Jörnvall,et al.  Purification and structural characterization of placental NAD(+)-linked 15-hydroxyprostaglandin dehydrogenase. The primary structure reveals the enzyme to belong to the short-chain alcohol dehydrogenase family. , 1990, Biochemistry.

[49]  M. Saier,et al.  Glucitol-specific enzymes of the phosphotransferase system in Escherichia coli. Nucleotide sequence of the gut operon. , 1987, The Journal of biological chemistry.

[50]  A. Bairoch,et al.  Potential DNA slippage structures acquired during evolutionary divergence of Acinetobacter calcoaceticus chromosomal benABC and Pseudomonas putida TOL pWW0 plasmid xylXYZ, genes encoding benzoate dioxygenases , 1991, Journal of bacteriology.